Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g17450 Fragaria vesca HOM05D015974 ORTHO05D008148 3.5e-109 398.3 201 100.0
FAN19G1675 Fragaria x ananassa HOM05D015974 ORTHO05D008148 7.9e-109 397.1 201 99.5
FAN28G2668 Fragaria x ananassa HOM05D015974 ORTHO05D008148 6.2e-45 184.9 95 98.9
FAN23G1252 Fragaria x ananassa HOM05D015974 ORTHO05D008148 2.3e-44 183.0 95 97.9
RcHm_v2.0_Chr5g0053551 Rosa chinensis HOM05D015974 ORTHO05D008148 7.3e-38 161.4 95 86.3
FAN23G0980 Fragaria x ananassa HOM05D015974 ORTHO05D008148 2.1e-32 143.3 110 74.5
RcHm_v2.0_Chr5g0053611 Rosa chinensis HOM05D015974 ORTHO05D008148 3.6e-21 105.9 58 91.4
FvH4_5g27530 Fragaria vesca HOM05D015974 ORTHO05D046478 2.0e-19 100.1 55 85.5
FAN18G3197 Fragaria x ananassa HOM05D015974 ORTHO05D046478 4.4e-19 99.0 55 83.6
MD15G1295400 Malus domestica HOM05D007513 ORTHO05D008148 3.3e-14 82.8 93 51.6
MD02G1183800 Malus domestica HOM05D007513 ORTHO05D008148 2.4e-12 76.6 90 53.3
TWI73G0368 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 4.0e-12 75.9 93 47.3
Duzib264G1124 Durio zibethinus HOM05D007513 ORTHO05D008148 1.2e-11 74.3 93 48.4
Ciclev10023109m.g Citrus clementina HOM05D007513 ORTHO05D008148 2.0e-11 73.6 95 45.3
Prupe.6G222400 Prunus persica HOM05D007513 ORTHO05D008148 2.6e-11 73.2 67 56.7
Potri.009G004400 Populus trichocarpa HOM05D007513 ORTHO05D008148 3.4e-11 72.8 84 52.4
Thecc.01G071100 Theobroma cacao HOM05D007513 ORTHO05D008148 3.4e-11 72.8 95 47.4
TWI09G0373 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 5.8e-11 72.0 85 49.4
Dinv26918 Davidia involucrata HOM05D007513 ORTHO05D008148 7.6e-11 71.6 93 47.3
CSS0045444 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.7e-10 70.5 90 44.4
CsaV3_3G041080 Cucumis sativus L. HOM05D007513 ORTHO05D008148 2.2e-10 70.1 95 46.3
CSS0003656 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 2.9e-10 69.7 90 44.4
Dinv04064 Davidia involucrata HOM05D007513 ORTHO05D008148 2.9e-10 69.7 93 46.2
Hma1.2p1_0730F.1_g209790 Hydrangea macrophylla HOM05D007513 ORTHO05D008148 2.9e-10 69.7 92 44.6
Eucgr.A01208 Eucalyptus grandis HOM05D007513 ORTHO05D008148 6.4e-10 68.6 93 46.2
Atru.chr3.153 Acer truncatum HOM05D007513 ORTHO05D008148 8.4e-10 68.2 93 40.9
ClCG10G015420 Citrullus lanatus HOM05D007513 ORTHO05D008148 8.4e-10 68.2 60 58.3
CANSAT01G0833 Cannabis sativa HOM05D007513 ORTHO05D008148 1.4e-09 67.4 82 45.1
Atru.chr3.182 Acer truncatum HOM05D007513 ORTHO05D008148 1.9e-09 67.0 93 40.9
Manes.13G112700 Manihot esculenta HOM05D007513 ORTHO05D008148 1.9e-09 67.0 106 44.3
SGA_v2.0_scaffold486G52374 Striga asiatica HOM05D007513 ORTHO05D008148 3.2e-09 66.2 94 40.4
CiPaw.02G003300 Carya illinoinensis HOM05D007513 ORTHO05D008148 4.2e-09 65.9 93 41.9
CSS0005454 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 5.4e-09 65.5 93 44.1
CSS0011696 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 5.4e-09 65.5 93 44.1
Carub.0004s0224 Capsella rubella HOM05D007513 ORTHO05D008148 5.4e-09 65.5 87 44.8
DCAR_017173 Daucus carota HOM05D007513 ORTHO05D008148 7.1e-09 65.1 57 56.1
HanXRQChr08g0219071 Helianthus annuus HOM05D007513 ORTHO05D008148 7.1e-09 65.1 93 41.9
Thhalv10027185m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 9.3e-09 64.7 98 39.8
HanXRQChr08g0219141 Helianthus annuus HOM05D007513 ORTHO05D008148 9.3e-09 64.7 93 41.9
PGR102G1378 Punica granatum HOM05D007513 ORTHO05D008148 9.3e-09 64.7 59 55.9
COL.COLO4_11560 Corchorus olitorius HOM05D007513 ORTHO05D008148 1.2e-08 64.3 95 40.0
Lsat_1_v5_gn_8_19701 Lactuca sativa HOM05D007513 ORTHO05D008148 1.2e-08 64.3 99 43.4
Sed0010624 Sechium edule HOM05D007513 ORTHO05D008148 1.2e-08 64.3 57 59.6
Glyma.06G321800 Glycine max HOM05D007513 ORTHO05D008148 1.6e-08 63.9 59 52.5
Actinidia03699 Actinidia chinensis HOM05D007513 ORTHO05D008148 2.1e-08 63.5 93 41.9
unitig_0.g544 Utricularia gibba HOM05D007513 ORTHO05D008148 2.7e-08 63.2 57 54.4
Medtr4g088715 Medicago truncatula HOM05D007513 ORTHO05D008148 3.5e-08 62.8 62 51.6
Nitab4.5_0000714g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 3.5e-08 62.8 93 37.6
Nitab4.5_0001417g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 3.5e-08 62.8 57 54.4
Psat6g076840 Pisum sativum HOM05D007513 ORTHO05D008148 3.5e-08 62.8 64 50.0
Ca_18552_v3 Cicer arietinum L. HOM05D007513 ORTHO05D008148 4.6e-08 62.4 56 51.8
Psat6g024240 Pisum sativum HOM05D007513 ORTHO05D008148 7.9e-08 61.6 59 47.5
ECA233G3995 Erigeron canadensis HOM05D007513 ORTHO05D008148 1.0e-07 61.2 95 42.1
AUR62016920 Chenopodium quinoa HOM05D007513 ORTHO05D008148 2.3e-07 60.1 64 50.0
Phvul.005G004100 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 3.9e-07 59.3 59 47.5
TPR.G24448 Trifolium pratense HOM05D007513 ORTHO05D008148 3.9e-07 59.3 88 40.9
vmacro14398 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 3.9e-07 59.3 91 40.7
arahy.Tifrunner.gnm1.ann1.LDCV9W Arachis hypogaea HOM05D007513 ORTHO05D008148 5.1e-07 58.9 91 38.5
Solyc03g044080.4 Solanum lycopersicum HOM05D007513 ORTHO05D008148 5.1e-07 58.9 58 51.7
vmacro07203 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 5.1e-07 58.9 59 50.8
arahy.Tifrunner.gnm1.ann1.P2RW0X Arachis hypogaea HOM05D007513 ORTHO05D008148 8.7e-07 58.2 56 50.0
arahy.Tifrunner.gnm1.ann1.QIRY5C Arachis hypogaea HOM05D007513 ORTHO05D008148 8.7e-07 58.2 56 50.0
Cc04_g16170 Coffea canephora HOM05D007513 ORTHO05D008148 8.7e-07 58.2 92 37.0
Gohir.D03G027900 Gossypium hirsutum HOM05D007513 ORTHO05D008148 1.1e-06 57.8 93 40.9
Lsat_1_v5_gn_8_17020 Lactuca sativa HOM05D007513 ORTHO05D008148 1.1e-06 57.8 94 41.5
BcaNung02934 Brassica carinata HOM05D014277 ORTHO05D008148 1.5e-06 57.4 57 52.6
A08p22690 Brassica napus HOM05D007513 ORTHO05D008148 1.5e-06 57.4 96 42.7
C03p79260 Brassica napus HOM05D007513 ORTHO05D008148 1.5e-06 57.4 96 42.7
Rhsim11G0028000 Rhododendron simsii HOM05D007513 ORTHO05D008148 1.5e-06 57.4 92 40.2
Sc16g0003000 Simmondsia chinensis HOM05D007513 ORTHO05D008148 1.5e-06 57.4 94 41.5
BolC3t20170H Brassica oleracea HOM05D007513 ORTHO05D008148 2.5e-06 56.6 92 41.3
arahy.Tifrunner.gnm1.ann1.8F1CK2 Arachis hypogaea HOM05D007513 ORTHO05D008148 3.3e-06 56.2 91 38.5
BcaB03g12338 Brassica carinata HOM05D007513 ORTHO05D008148 3.3e-06 56.2 92 39.1
BcaC01g00397 Brassica carinata HOM05D007513 ORTHO05D008148 3.3e-06 56.2 92 41.3
MELO3C030975.2 Cucumis melo HOM05D007513 ORTHO05D008148 3.3e-06 56.2 50 58.0
VMungo1080G1633 Vigna mungo HOM05D007513 ORTHO05D008148 3.3e-06 56.2 59 47.5
C07p62480 Brassica napus HOM05D014277 ORTHO05D008148 4.3e-06 55.8 57 50.9
BraA08t34236Z Brassica rapa HOM05D007513 ORTHO05D008148 4.3e-06 55.8 92 41.3
SalBow6G0964 Salvia bowleyana HOM05D007513 ORTHO05D008148 4.3e-06 55.8 93 38.7
DCAR_013160 Daucus carota HOM05D007513 ORTHO05D008148 5.6e-06 55.5 57 52.6
Glyma.04G112900 Glycine max HOM05D007513 ORTHO05D008148 5.6e-06 55.5 54 50.0
Peaxi162Scf00118g02024 Petunia axillaris HOM05D007513 ORTHO05D008148 5.6e-06 55.5 53 52.8
CDE07G2080 Ceratophyllum demersum HOM05D007513 ORTHO05D008148 7.4e-06 55.1 57 47.4
BcaNung02064 Brassica carinata HOM05D014277 ORTHO05D008148 9.6e-06 54.7 57 49.1


User provided reference genes

Program Settings