Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 1.6e-241 839.0 417 100.0
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 4.6e-236 820.8 417 98.3
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.0e-235 819.7 417 98.1
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.3e-234 814.7 420 96.7
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 1.8e-216 755.7 419 90.5
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 1.7e-190 669.5 413 82.3
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 1.6e-172 609.8 411 75.9
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 2.3e-171 605.9 420 74.0
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 1.5e-170 603.2 411 76.2
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 3.4e-170 602.1 412 77.2
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 5.7e-170 601.3 382 78.5
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 3.7e-169 598.6 415 75.4
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 4.8e-169 598.2 418 73.7
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 6.3e-169 597.8 411 72.7
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 1.4e-168 596.7 419 73.3
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 4.1e-168 595.1 374 78.6
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 7.0e-168 594.3 375 78.1
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 2.0e-167 592.8 375 78.1
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 4.5e-167 591.7 382 75.7
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 1.3e-166 590.1 411 73.0
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 8.5e-166 587.4 387 76.7
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 8.5e-166 587.4 404 74.5
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 3.2e-165 585.5 422 71.6
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 9.5e-165 583.9 405 73.3
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 1.2e-164 583.6 409 73.8
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 6.1e-164 581.3 384 74.2
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 1.0e-163 580.5 418 72.5
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 2.3e-163 579.3 407 72.2
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 4.0e-163 578.6 417 71.0
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 2.0e-162 576.2 411 70.3
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 2.6e-162 575.9 417 70.5
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 9.8e-162 573.9 411 70.1
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 2.8e-161 572.4 419 70.2
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 4.9e-161 571.6 372 74.2
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 4.9e-161 571.6 381 73.5
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 8.3e-161 570.9 375 74.4
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 5.4e-160 568.2 410 71.0
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 7.0e-160 567.8 415 70.6
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 1.6e-159 566.6 400 72.5
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 7.7e-159 564.3 370 75.1
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 1.0e-158 563.9 398 69.8
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 1.3e-158 563.5 400 71.0
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 1.3e-158 563.5 399 72.2
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 3.8e-158 562.0 373 74.8
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 3.8e-158 562.0 368 75.5
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 5.0e-158 561.6 388 71.1
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 6.6e-158 561.2 407 70.8
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 8.6e-158 560.8 411 69.1
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 1.1e-157 560.5 403 71.0
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 1.1e-157 560.5 403 71.0
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 1.1e-157 560.5 416 70.0
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 1.5e-157 560.1 398 70.1
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 1.9e-157 559.7 375 72.8
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 9.5e-157 557.4 383 71.5
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 1.2e-156 557.0 374 74.1
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 2.1e-156 556.2 421 67.7
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 2.1e-156 556.2 374 74.3
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 2.1e-156 556.2 381 73.5
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 4.7e-156 555.1 404 70.3
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 4.7e-156 555.1 415 68.0
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 1.8e-155 553.1 462 63.2
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 3.0e-155 552.4 393 71.0
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 3.0e-155 552.4 398 70.1
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 4.0e-155 552.0 375 74.1
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 6.8e-155 551.2 398 70.4
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 8.9e-155 550.8 362 75.1
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 2.6e-154 549.3 401 70.6
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 3.4e-154 548.9 400 69.8
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 9.8e-154 547.4 409 68.7
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.7e-153 546.6 377 71.6
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 2.2e-153 546.2 399 70.4
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 2.9e-153 545.8 367 72.2
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 3.7e-153 545.4 428 66.6
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 8.3e-153 544.3 381 69.8
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 1.1e-152 543.9 371 73.0
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.4e-152 542.7 374 70.6
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 2.4e-152 542.7 423 65.7
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 4.1e-152 542.0 366 74.0
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 2.7e-151 539.3 409 66.7
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 1.7e-150 536.6 388 71.4
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.3e-149 531.9 418 66.3
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.3e-149 531.9 418 66.3
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.3e-149 531.9 406 67.0
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 3.6e-148 528.9 349 74.5
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 2.3e-147 526.2 381 68.8
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 6.8e-147 524.6 399 66.2
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 8.9e-147 524.2 378 71.7
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 2.0e-146 523.1 371 72.2
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 2.6e-146 522.7 396 67.2
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 2.6e-146 522.7 378 71.4
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 3.3e-141 505.8 374 68.4
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 5.6e-141 505.0 373 70.2
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 6.8e-139 498.0 372 65.3
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 3.2e-136 489.2 381 65.4
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 1.4e-131 473.8 433 60.0
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 1.8e-131 473.4 368 64.7
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 9.9e-130 467.6 363 64.5
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 1.3e-126 457.2 385 61.8
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 3.0e-126 456.1 399 61.7
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 1.4e-123 447.2 386 60.4
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 5.2e-123 445.3 367 64.0
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 2.7e-119 433.0 385 58.2
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 9.6e-117 424.5 378 57.7
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 3.1e-115 419.5 376 59.3
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 2.0e-114 416.8 371 58.8
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 1.0e-110 404.4 390 54.6
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 1.3e-110 404.1 376 58.8
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 6.2e-108 395.2 399 52.4
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 8.1e-108 394.8 384 52.6
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 1.6e-103 380.6 284 69.4
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.3e-101 372.9 183 98.4
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.3e-101 372.9 183 98.4
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 2.4e-99 366.7 316 63.0
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 1.0e-97 361.3 277 65.0
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 1.6e-95 354.0 385 51.9
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.6e-92 344.0 223 71.7
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 1.7e-89 334.0 319 56.1
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 1.9e-80 303.9 390 44.6
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 1.8e-62 244.2 379 41.2
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 4.5e-58 229.6 170 64.7
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 9.1e-51 205.3 420 36.2
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 1.1e-48 198.4 117 79.5
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.0e-38 165.2 131 63.4
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 1.0e-38 165.2 398 33.7
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 8.9e-38 162.2 149 63.1
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.2e-35 153.7 143 59.4
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 1.4e-30 138.3 83 78.3
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 1.2e-29 135.2 394 32.0
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 4.1e-11 73.6 113 41.6
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 5.4e-11 73.2 73 50.7
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 5.4e-11 73.2 73 50.7
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 6.0e-10 69.7 319 26.0
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 9.6e-08 62.4 87 43.7
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 5.2e-06 56.6 411 22.1


User provided reference genes

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