Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 4.1e-198 694.5 345 100.0
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.6e-197 692.6 345 99.7
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.4e-193 679.5 345 97.4
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 3.2e-190 668.3 349 95.4
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 2.3e-188 662.1 345 95.4
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 2.8e-162 575.5 345 82.3
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 1.2e-160 570.1 345 78.0
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 1.5e-160 569.7 345 80.6
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 2.0e-160 569.3 345 78.6
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 4.2e-158 561.6 344 77.6
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 8.7e-156 553.9 345 76.2
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 8.1e-154 547.4 375 70.9
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 2.6e-152 542.3 348 77.0
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 1.3e-151 540.0 343 75.2
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.3e-151 540.0 346 74.9
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 3.8e-151 538.5 345 74.8
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 4.9e-151 538.1 346 74.9
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 1.9e-150 536.2 345 74.5
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 2.4e-150 535.8 349 75.1
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 5.4e-150 534.6 345 74.2
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 7.1e-150 534.3 348 75.6
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 2.7e-149 532.3 346 75.7
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 1.3e-148 530.0 346 75.4
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 2.3e-148 529.3 354 71.8
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 3.0e-148 528.9 354 72.3
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 3.9e-148 528.5 343 74.6
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 5.1e-148 528.1 349 73.4
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 1.9e-147 526.2 349 74.5
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 5.6e-147 524.6 345 73.0
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 7.4e-147 524.2 349 73.9
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 1.3e-146 523.5 374 70.1
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 4.8e-146 521.5 345 73.3
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 7.6e-144 514.2 330 74.2
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 1.7e-143 513.1 345 72.5
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.7e-143 513.1 347 73.2
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 4.9e-143 511.5 343 71.4
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 6.4e-143 511.1 346 71.1
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 1.9e-142 509.6 349 72.5
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 2.4e-142 509.2 345 72.2
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 2.4e-142 509.2 351 71.8
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 2.4e-142 509.2 345 70.4
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 2.4e-142 509.2 344 70.3
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 3.2e-142 508.8 306 78.8
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 5.5e-142 508.1 346 71.4
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 5.5e-142 508.1 345 70.1
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 1.2e-141 506.9 346 70.2
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 6.0e-141 504.6 349 70.8
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 3.9e-140 501.9 349 70.8
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 5.1e-140 501.5 286 85.0
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 1.1e-139 500.4 345 70.1
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 2.5e-139 499.2 347 70.3
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 2.1e-138 496.1 338 71.3
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 2.1e-138 496.1 361 65.4
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 2.1e-138 496.1 345 71.3
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.1e-137 493.8 340 71.8
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 1.4e-137 493.4 343 70.6
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 1.4e-137 493.4 340 72.9
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 3.1e-137 492.3 340 71.8
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 9.0e-137 490.7 346 70.8
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 9.0e-137 490.7 346 67.9
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 1.5e-136 490.0 349 68.8
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 4.5e-136 488.4 347 70.0
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 4.5e-136 488.4 347 70.0
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.3e-135 486.9 316 73.4
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 1.7e-135 486.5 346 70.2
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 1.7e-135 486.5 346 70.2
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 1.7e-135 486.5 304 77.0
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 6.5e-135 484.6 347 68.6
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.4e-134 483.4 343 70.6
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.9e-134 483.0 306 75.5
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 2.1e-133 479.6 380 63.2
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 7.9e-133 477.6 348 68.1
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.8e-132 476.5 347 69.2
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.6e-130 469.9 344 68.3
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.6e-130 469.9 305 74.1
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 6.9e-129 464.5 299 75.9
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 6.9e-129 464.5 343 65.6
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 1.2e-128 463.8 346 66.2
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 1.0e-127 460.7 351 66.4
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 3.2e-126 455.7 330 69.1
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 7.2e-126 454.5 327 67.6
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 3.0e-124 449.1 330 68.2
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 3.9e-124 448.7 336 65.8
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 8.7e-124 447.6 350 64.3
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 8.7e-124 447.6 333 66.7
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 8.7e-124 447.6 309 69.3
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 1.5e-123 446.8 310 70.3
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 1.9e-123 446.4 341 66.0
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 2.5e-123 446.0 342 62.6
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 4.3e-123 445.3 331 68.0
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 4.3e-123 445.3 342 64.6
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 5.7e-123 444.9 332 67.5
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 9.7e-123 444.1 330 67.0
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 5.3e-121 438.3 361 60.4
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 6.9e-121 438.0 279 74.9
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 5.9e-120 434.9 285 74.0
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.3e-119 433.7 286 72.4
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 3.8e-119 432.2 334 61.4
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 6.5e-119 431.4 306 69.0
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 3.2e-118 429.1 343 63.0
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 7.2e-118 427.9 279 73.8
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 1.2e-117 427.2 341 62.2
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 3.6e-117 425.6 349 62.2
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 4.6e-117 425.2 311 63.7
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 1.0e-116 424.1 283 73.5
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 1.4e-116 423.7 314 65.6
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 5.1e-116 421.8 342 62.6
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 5.1e-116 421.8 315 65.4
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 2.0e-115 419.9 314 65.3
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 2.0e-115 419.9 314 65.3
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 3.3e-115 419.1 314 65.0
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 5.7e-115 418.3 342 61.7
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 1.1e-113 414.1 314 64.3
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 9.1e-113 411.0 311 62.4
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 2.5e-110 402.9 323 60.1
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.6e-109 400.2 341 62.2
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 7.9e-109 397.9 261 71.6
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 3.0e-108 396.0 333 62.8
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 8.2e-106 387.9 344 59.6
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 5.3e-105 385.2 308 64.6
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 1.6e-104 383.6 356 56.7
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 7.7e-104 381.3 360 58.1
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.7e-103 380.2 282 63.1
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 8.5e-103 377.9 360 57.5
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 2.7e-101 372.9 362 55.0
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.4e-100 370.5 251 72.5
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 4.4e-99 365.5 303 57.1
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 4.8e-98 362.1 311 55.0
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 9.1e-97 357.8 325 56.6
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 8.5e-95 351.3 346 55.2
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.9e-94 350.1 303 56.1
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.5e-91 340.5 309 53.7
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.4e-89 334.0 164 99.4
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 1.7e-87 327.0 340 49.7
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 3.0e-84 316.2 229 69.0
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 2.0e-83 313.5 235 62.6
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 1.7e-82 310.5 335 46.6
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 9.2e-81 304.7 233 64.8
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 1.0e-79 301.2 318 55.7
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 3.8e-79 299.3 281 53.7
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.8e-73 280.4 203 67.5
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.6e-59 233.4 165 66.1
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.6e-59 233.4 165 66.1
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 8.3e-58 228.4 140 79.3
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 6.6e-47 192.2 112 79.5
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 9.0e-44 181.8 333 33.9
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.3e-42 177.9 112 77.7
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.3e-42 177.9 194 51.0
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 1.0e-39 168.3 308 34.7
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 1.9e-33 147.5 330 31.5
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 6.0e-32 142.5 129 55.8
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 7.9e-32 142.1 163 49.1
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 5.6e-30 136.0 361 33.2
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 3.0e-23 113.6 87 65.5
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 1.5e-22 111.3 169 38.5
FAN23G0103 Fragaria x ananassa HOM05D004652 ORTHO05D198901 9.6e-22 108.6 117 55.6
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 1.4e-17 94.7 286 28.0
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 2.1e-16 90.9 105 44.8


User provided reference genes

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