Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 2716.8 1407 100.0
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2609.7 1407 95.8
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2554.6 1326 99.5
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2553.1 1383 94.9
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 2373.2 1416 87.6
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 2206.0 1328 87.1
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1751.1 1340 69.9
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1709.5 1342 68.3
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1698.3 1338 67.2
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1362.8 1353 57.2
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1338.6 1347 56.5
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1336.6 1364 55.6
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1312.7 1353 54.0
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1303.9 1333 54.9
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1291.2 1356 54.1
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1267.7 1326 54.4
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1264.6 1324 53.8
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 1258.8 1327 54.0
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1239.2 1374 52.2
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1235.7 1354 52.3
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1230.7 1348 52.2
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1226.8 1345 51.7
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1200.7 1364 51.6
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1184.9 1358 51.4
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1180.2 1358 51.2
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1177.9 1355 51.3
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1177.2 1335 51.5
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1174.1 1354 50.6
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1147.1 1329 50.7
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1129.4 1345 50.3
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 0.0e+00 1125.2 1354 48.4
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1097.4 1252 51.0
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 1080.9 1303 48.8
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 1079.7 1292 49.8
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1078.2 1344 48.0
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 1077.8 1491 44.7
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 3.4e-307 1058.9 1310 47.9
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 1.3e-306 1057.0 1350 45.9
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 9.2e-305 1050.8 1310 47.2
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 2.1e-301 1039.6 1371 46.3
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 3.6e-301 1038.9 1306 47.5
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 3.1e-300 1035.8 1320 47.2
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 6.8e-300 1034.6 1352 46.1
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 4.9e-298 1028.5 1364 48.8
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 1.1e-297 1027.3 1317 46.5
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 1.2e-296 1023.8 1355 46.1
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 7.8e-296 1021.1 1337 46.9
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 6.6e-295 1018.1 1331 46.4
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 4.3e-294 1015.4 1312 46.4
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 6.4e-290 1001.5 1215 47.2
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 2.4e-289 999.6 1331 45.4
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 1.0e-287 994.2 1331 45.4
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 2.3e-287 993.0 1338 45.6
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 3.3e-286 989.2 1283 45.8
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 7.3e-286 988.0 1317 45.3
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 1.6e-285 986.9 1335 45.0
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 4.8e-285 985.3 1192 49.5
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 2.0e-283 979.9 1228 46.3
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 1.7e-282 976.9 1314 45.4
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 1.9e-281 973.4 1309 45.3
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 2.5e-278 963.0 1338 44.3
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 2.1e-277 959.9 1340 43.7
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 1.8e-276 956.8 1324 44.9
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 2.0e-275 953.4 1325 43.5
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 6.7e-271 938.3 1271 44.5
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 1.4e-268 930.6 1374 43.0
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 6.5e-266 921.8 1334 42.7
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 2.1e-264 916.8 1336 43.9
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 2.2e-258 896.7 1342 42.0
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 5.5e-257 892.1 1327 42.9
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 7.4e-254 881.7 1308 42.0
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 3.1e-244 849.7 1348 41.7
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 7.4e-238 828.6 1332 40.1
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 9.1e-236 821.6 1316 40.6
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 2.3e-231 807.0 1344 40.7
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 8.8e-231 805.1 1345 41.2
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 2.2e-221 773.9 1353 39.3
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 4.3e-209 733.0 1338 38.9
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.8e-204 717.6 1310 36.7
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 7.5e-198 695.7 705 54.8
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 2.2e-197 694.1 690 55.7
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 7.0e-196 689.1 1086 41.3
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 6.4e-189 666.0 1308 36.1
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 7.8e-187 659.1 1337 34.6
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.5e-177 627.5 1229 36.1
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 4.7e-176 623.2 700 52.9
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 1.8e-175 621.3 1296 35.4
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 1.5e-174 618.2 1300 34.5
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 3.4e-174 617.1 1183 34.9
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 1.4e-172 611.7 1250 34.9
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 9.9e-166 589.0 1232 34.3
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 3.8e-165 587.0 699 49.2
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 2.4e-164 584.3 1303 34.8
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 1.5e-158 565.1 940 37.2
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 1.8e-151 541.6 652 48.2
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 2.5e-145 521.2 629 47.4
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 6.5e-141 506.5 574 51.2
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 6.3e-136 490.0 726 42.8
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.6e-134 484.6 776 40.3
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 3.6e-131 474.2 798 42.1
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 5.5e-124 450.3 736 41.6
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 6.8e-106 390.2 685 42.2
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 7.5e-105 386.7 711 33.2
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 1.7e-96 359.0 369 52.0
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 3.8e-93 347.8 793 33.2
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 9.5e-92 343.2 691 37.2
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 5.2e-90 337.4 717 36.5
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 5.9e-86 323.9 919 30.6
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 2.4e-71 275.4 780 28.3
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.6e-70 272.7 347 43.5
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.3e-69 269.6 627 32.2
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 3.9e-45 188.3 287 39.7
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 3.4e-41 175.3 292 38.0
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 1.0e-37 163.7 598 30.6
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 2.8e-35 155.6 629 29.9
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 9.0e-26 124.0 252 30.2
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 2.9e-24 119.0 569 31.3
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 6.5e-24 117.9 221 35.7
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 2.5e-23 115.9 115 53.0
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 6.1e-22 111.3 377 24.7
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.0e-16 94.0 310 35.2
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.0e-16 94.0 310 35.2
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 1.3e-16 93.6 211 33.2
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 1.4e-15 90.1 142 33.8
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 3.2e-15 89.0 507 25.8
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 1.6e-14 86.7 569 28.3
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 2.7e-14 85.9 264 30.7
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 4.7e-14 85.1 547 28.9
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 1.5e-12 80.1 573 26.2
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 2.6e-12 79.3 321 25.9
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 4.4e-12 78.6 573 26.2
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 8.2e-11 74.3 373 22.0
Sabra05G0109200 Salix brachista HOM05D006144 ORTHO05D006357 1.1e-10 73.9 189 38.1
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 1.4e-10 73.6 490 27.6
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 1.4e-10 73.6 490 27.6
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 4.1e-10 72.0 570 25.1
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 6.9e-10 71.2 181 32.0
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 2.6e-09 69.3 137 31.4
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 8.5e-08 64.3 93 40.9
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 1.9e-07 63.2 92 42.4


User provided reference genes

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