Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g15481 Fragaria vesca HOM05D008495 ORTHO05D035435 8.8e-66 253.4 126 100.0
FvH4_1g15500 Fragaria vesca HOM05D000529 ORTHO05D000472 1.3e-29 133.3 173 49.7
RcHm_v2.0_Chr2g0104761 Rosa chinensis HOM05D000529 ORTHO05D000472 2.6e-25 119.0 149 50.3
FAN26G1217 Fragaria x ananassa HOM05D008495 ORTHO05D035435 4.8e-19 98.2 54 90.7
MD06G1115200 Malus domestica HOM05D000081 ORTHO05D000036 1.9e-15 86.3 100 50.0
Prupe.5G127900 Prunus persica HOM05D000529 ORTHO05D012517 2.1e-14 82.8 85 51.8
MD06G1115400 Malus domestica HOM05D000529 ORTHO05D025806 3.0e-13 79.0 102 47.1
FAN26G1753 Fragaria x ananassa HOM05D000046 ORTHO05D020739 1.5e-12 76.6 84 52.4
RcHm_v2.0_Chr2g0104621 Rosa chinensis HOM05D000046 ORTHO05D020635 3.3e-12 75.5 80 50.0
FAN28G0950 Fragaria x ananassa HOM05D000046 ORTHO05D020635 4.3e-12 75.1 89 49.4
FAN26G3207 Fragaria x ananassa HOM05D000529 ORTHO05D000472 9.6e-12 73.9 85 48.2
RcHm_v2.0_Chr2g0102961 Rosa chinensis HOM05D000046 ORTHO05D020739 1.3e-11 73.6 82 54.9
FAN23G0627 Fragaria x ananassa HOM05D000046 ORTHO05D020739 3.6e-11 72.0 84 50.0
FAN02G0225 Fragaria x ananassa HOM05D008495 ORTHO05D010311 5.3e-10 68.2 78 52.6
FvH4_5g03530 Fragaria vesca HOM05D008495 ORTHO05D020679 6.9e-10 67.8 93 46.2
FAN18G0985 Fragaria x ananassa HOM05D008495 ORTHO05D022638 6.9e-10 67.8 93 46.2
FAN04G0406 Fragaria x ananassa HOM05D008495 ORTHO05D022638 9.0e-10 67.4 82 48.8
FvH4_5g03550 Fragaria vesca HOM05D008495 ORTHO05D022638 1.2e-09 67.0 82 47.6
FAN18G0704 Fragaria x ananassa HOM05D008495 ORTHO05D022638 1.2e-09 67.0 82 47.6
RcHm_v2.0_Chr2g0104831 Rosa chinensis HOM05D000083 ORTHO05D002708 2.0e-09 66.2 83 47.0
FAN28G1072 Fragaria x ananassa HOM05D008495 ORTHO05D020679 3.4e-09 65.5 85 44.7
FAN13G3081 Fragaria x ananassa HOM05D008495 ORTHO05D022638 4.5e-09 65.1 82 47.6
FvH4_1g15170 Fragaria vesca HOM05D000529 ORTHO05D000472 5.8e-09 64.7 182 32.4
FAN23G2222 Fragaria x ananassa HOM05D000529 ORTHO05D000472 9.9e-09 63.9 181 32.6
FAN26G2562 Fragaria x ananassa HOM05D000046 ORTHO05D207025 1.3e-08 63.5 82 41.5
FAN28G1384 Fragaria x ananassa HOM05D008495 ORTHO05D020739 1.3e-08 63.5 71 50.7
RcHm_v2.0_Chr2g0104431 Rosa chinensis HOM05D000529 ORTHO05D000472 1.3e-08 63.5 180 31.7
FAN08G1127 Fragaria x ananassa HOM05D008495 ORTHO05D022578 1.7e-08 63.2 82 45.1
FAN19G1579 Fragaria x ananassa HOM05D008495 ORTHO05D020679 2.2e-08 62.8 85 43.5
RcHm_v2.0_Chr3g0480541 Rosa chinensis HOM05D000529 ORTHO05D000472 2.2e-08 62.8 178 31.5
arahy.Tifrunner.gnm1.ann1.3N9TDM Arachis hypogaea HOM05D000033 ORTHO05D019823 2.9e-08 62.4 92 34.8
arahy.Tifrunner.gnm1.ann1.RP061L Arachis hypogaea HOM05D000033 ORTHO05D038917 2.9e-08 62.4 92 34.8
FAN23G2720 Fragaria x ananassa HOM05D000046 ORTHO05D020635 2.9e-08 62.4 68 48.5
Prupe.7G138400 Prunus persica HOM05D000046 ORTHO05D025806 2.9e-08 62.4 81 44.4
RcHm_v2.0_Chr3g0480561 Rosa chinensis HOM05D000529 ORTHO05D000472 2.9e-08 62.4 181 32.0
FAN18G4342 Fragaria x ananassa HOM05D008495 ORTHO05D029605 3.8e-08 62.0 79 43.0
FAN26G2892 Fragaria x ananassa HOM05D000529 ORTHO05D000472 4.9e-08 61.6 158 31.0
MD02G1022000 Malus domestica HOM05D008495 ORTHO05D025806 6.4e-08 61.2 78 48.7
FvH4_1g15040 Fragaria vesca HOM05D008495 ORTHO05D020679 8.4e-08 60.8 85 42.4
FAN08G2107 Fragaria x ananassa HOM05D008495 ORTHO05D022578 8.4e-08 60.8 79 41.8
FAN13G1363 Fragaria x ananassa HOM05D008495 ORTHO05D029605 8.4e-08 60.8 79 41.8
FAN13G2265 Fragaria x ananassa HOM05D008495 ORTHO05D029605 8.4e-08 60.8 79 41.8
MD02G1021700 Malus domestica HOM05D000041 ORTHO05D001532 1.1e-07 60.5 71 54.9
FvH4_1g15120 Fragaria vesca HOM05D000529 ORTHO05D000472 1.4e-07 60.1 88 35.2
FvH4_1g15270 Fragaria vesca HOM05D000046 ORTHO05D010311 1.4e-07 60.1 82 43.9
FvH4_1g15350 Fragaria vesca HOM05D008495 ORTHO05D010311 1.9e-07 59.7 82 41.5
arahy.Tifrunner.gnm1.ann1.AANK3P Arachis hypogaea HOM05D000033 ORTHO05D083727 2.4e-07 59.3 78 42.3
FAN19G2244 Fragaria x ananassa HOM05D000046 ORTHO05D020635 2.4e-07 59.3 58 50.0
FvH4_1g15430 Fragaria vesca HOM05D000046 ORTHO05D020635 3.2e-07 58.9 58 50.0
FAN04G2910 Fragaria x ananassa HOM05D008495 ORTHO05D022578 3.2e-07 58.9 79 40.5
arahy.Tifrunner.gnm1.ann1.KL9X3Y Arachis hypogaea HOM05D003581 ORTHO05D004332 5.5e-07 58.2 77 41.6
FvH4_5g03510 Fragaria vesca HOM05D008495 ORTHO05D029605 5.5e-07 58.2 79 41.8
FAN23G1609 Fragaria x ananassa HOM05D008495 ORTHO05D020739 5.5e-07 58.2 76 50.0
FAN26G2300 Fragaria x ananassa HOM05D000046 ORTHO05D020635 5.5e-07 58.2 58 50.0
MD02G1165900 Malus domestica HOM05D000529 ORTHO05D010311 5.5e-07 58.2 91 36.3
FAN28G0376 Fragaria x ananassa HOM05D000529 ORTHO05D000472 7.1e-07 57.8 179 31.8
FAN28G1580 Fragaria x ananassa HOM05D000529 ORTHO05D000472 7.1e-07 57.8 179 31.8
RcHm_v2.0_Chr2g0104151 Rosa chinensis HOM05D000529 ORTHO05D000472 7.1e-07 57.8 87 35.6
MD02G1165300 Malus domestica HOM05D000529 ORTHO05D000472 9.3e-07 57.4 84 39.3
RcHm_v2.0_Chr2g0104561 Rosa chinensis HOM05D000046 ORTHO05D025806 9.3e-07 57.4 80 43.8
arahy.Tifrunner.gnm1.ann1.50YJF0 Arachis hypogaea HOM05D000033 ORTHO05D085538 1.2e-06 57.0 78 41.0
RcHm_v2.0_Chr1g0373981 Rosa chinensis HOM05D000614 ORTHO05D000463 1.2e-06 57.0 81 40.7
Cfa021022 Carpinus fangiana HOM05D000529 ORTHO05D010311 1.6e-06 56.6 95 33.7
arahy.Tifrunner.gnm1.ann1.W15MA1 Arachis hypogaea HOM05D000139 ORTHO05D000103 2.7e-06 55.8 91 36.3
FAN04G1506 Fragaria x ananassa HOM05D008495 ORTHO05D022578 2.7e-06 55.8 79 40.5
MD15G1278700 Malus domestica HOM05D000046 ORTHO05D025806 2.7e-06 55.8 71 52.1
RcHm_v2.0_Chr1g0326431 Rosa chinensis HOM05D000529 ORTHO05D000472 2.7e-06 55.8 80 36.2
RcHm_v2.0_Chr2g0104631 Rosa chinensis HOM05D008495 ORTHO05D020635 2.7e-06 55.8 57 47.4
FAN06G0595 Fragaria x ananassa HOM05D000166 ORTHO05D001532 3.5e-06 55.5 69 44.9
RcHm_v2.0_Chr2g0104391 Rosa chinensis HOM05D000529 ORTHO05D000472 3.5e-06 55.5 152 31.6
FvH4_7g14830 Fragaria vesca HOM05D000166 ORTHO05D001532 4.6e-06 55.1 71 45.1
FAN06G0627 Fragaria x ananassa HOM05D000166 ORTHO05D001532 4.6e-06 55.1 71 43.7
FAN13G2367 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.6e-06 55.1 81 37.0
FAN28G2711 Fragaria x ananassa HOM05D008495 ORTHO05D035435 4.6e-06 55.1 75 48.0
Prupe.7G140400 Prunus persica HOM05D000529 ORTHO05D020679 4.6e-06 55.1 80 43.8
FAN18G1596 Fragaria x ananassa HOM05D000248 ORTHO05D017958 6.0e-06 54.7 91 39.6
FAN18G3298 Fragaria x ananassa HOM05D000248 ORTHO05D012517 6.0e-06 54.7 91 39.6
MD02G1164800 Malus domestica HOM05D000529 ORTHO05D000472 6.0e-06 54.7 84 38.1
RcHm_v2.0_Chr2g0104171 Rosa chinensis HOM05D000529 ORTHO05D000472 6.0e-06 54.7 88 33.0
arahy.Tifrunner.gnm1.ann1.XFEU61 Arachis hypogaea HOM05D000139 ORTHO05D000103 7.9e-06 54.3 91 35.2
MD02G1164300 Malus domestica HOM05D000529 ORTHO05D000472 7.9e-06 54.3 77 41.6
RcHm_v2.0_Chr2g0104571 Rosa chinensis HOM05D000046 ORTHO05D000195 7.9e-06 54.3 51 47.1


User provided reference genes

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