Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g15300 Fragaria vesca HOM05D008495 ORTHO05D022578 5.0e-186 654.4 366 100.0
FAN19G1335 Fragaria x ananassa HOM05D008495 ORTHO05D022578 9.2e-156 553.9 366 87.7
Prupe.7G138400 Prunus persica HOM05D000046 ORTHO05D025806 2.4e-31 140.6 363 33.6
MD06G1115200 Malus domestica HOM05D000081 ORTHO05D000036 1.0e-29 135.2 378 34.9
RcHm_v2.0_Chr2g0104561 Rosa chinensis HOM05D000046 ORTHO05D025806 6.6e-29 132.5 361 33.8
MD15G1278700 Malus domestica HOM05D000046 ORTHO05D025806 1.1e-26 125.2 355 33.8
MD02G1022000 Malus domestica HOM05D008495 ORTHO05D025806 2.0e-25 120.9 353 31.7
Prupe.5G127900 Prunus persica HOM05D000529 ORTHO05D012517 2.0e-25 120.9 378 33.3
MD06G1115400 Malus domestica HOM05D000529 ORTHO05D025806 9.9e-25 118.6 378 32.5
FAN18G4342 Fragaria x ananassa HOM05D008495 ORTHO05D029605 8.6e-21 105.5 347 32.3
FvH4_5g03510 Fragaria vesca HOM05D008495 ORTHO05D029605 1.1e-20 105.1 362 32.0
FAN13G2265 Fragaria x ananassa HOM05D008495 ORTHO05D029605 1.5e-20 104.8 363 32.8
FAN04G0406 Fragaria x ananassa HOM05D008495 ORTHO05D022638 4.3e-20 103.2 339 29.5
FAN13G1363 Fragaria x ananassa HOM05D008495 ORTHO05D029605 4.3e-20 103.2 363 32.8
FAN08G2107 Fragaria x ananassa HOM05D008495 ORTHO05D022578 5.6e-20 102.8 367 32.2
FAN13G3081 Fragaria x ananassa HOM05D008495 ORTHO05D022638 5.6e-20 102.8 339 29.5
FAN26G0958 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.6e-19 101.3 363 29.2
FAN18G0704 Fragaria x ananassa HOM05D008495 ORTHO05D022638 2.1e-19 100.9 341 29.0
FAN13G2049 Fragaria x ananassa HOM05D000306 ORTHO05D025348 3.6e-19 100.1 368 29.9
FAN04G2910 Fragaria x ananassa HOM05D008495 ORTHO05D022578 4.7e-19 99.8 316 32.6
FAN18G0985 Fragaria x ananassa HOM05D008495 ORTHO05D022638 1.1e-18 98.6 334 28.1
FvH4_5g03550 Fragaria vesca HOM05D008495 ORTHO05D022638 1.8e-18 97.8 341 28.4
FvH4_5g11250 Fragaria vesca HOM05D000306 ORTHO05D025348 2.4e-18 97.4 368 28.8
FvH4_1g15330 Fragaria vesca HOM05D000529 ORTHO05D000472 5.2e-18 96.3 365 27.9
FAN04G1506 Fragaria x ananassa HOM05D008495 ORTHO05D022578 1.2e-17 95.1 316 32.0
RcHm_v2.0_Chr7g0186691 Rosa chinensis HOM05D000529 ORTHO05D012517 2.6e-17 94.0 374 27.3
FAN18G3041 Fragaria x ananassa HOM05D000083 ORTHO05D025348 7.6e-17 92.4 365 26.8
FAN18G0367 Fragaria x ananassa HOM05D000083 ORTHO05D025348 9.9e-17 92.0 365 26.6
FvH4_5g11090 Fragaria vesca HOM05D001011 ORTHO05D035356 3.8e-16 90.1 369 27.6
FvH4_5g11160 Fragaria vesca HOM05D008495 ORTHO05D035356 3.8e-16 90.1 369 27.6
FAN26G0747 Fragaria x ananassa HOM05D001563 ORTHO05D000761 3.8e-16 90.1 369 29.8
RcHm_v2.0_Chr2g0102961 Rosa chinensis HOM05D000046 ORTHO05D020739 3.8e-16 90.1 144 43.1
FAN08G1127 Fragaria x ananassa HOM05D008495 ORTHO05D022578 4.9e-16 89.7 237 30.8
RcHm_v2.0_Chr7g0186631 Rosa chinensis HOM05D008495 ORTHO05D017958 6.4e-16 89.4 356 27.2
FvH4_1g15500 Fragaria vesca HOM05D000529 ORTHO05D000472 1.1e-15 88.6 136 41.2
FAN19G2660 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.4e-15 88.2 339 28.6
RcHm_v2.0_Chr2g0143661 Rosa chinensis HOM05D003771 ORTHO05D010311 4.2e-15 86.7 145 39.3
FAN13G1190 Fragaria x ananassa HOM05D008495 ORTHO05D012517 5.4e-15 86.3 370 26.2
FAN28G1072 Fragaria x ananassa HOM05D008495 ORTHO05D020679 2.1e-14 84.3 147 41.5
FAN19G1579 Fragaria x ananassa HOM05D008495 ORTHO05D020679 3.5e-14 83.6 147 41.5
FAN02G0225 Fragaria x ananassa HOM05D008495 ORTHO05D010311 4.6e-14 83.2 153 39.2
FAN26G1753 Fragaria x ananassa HOM05D000046 ORTHO05D020739 6.0e-14 82.8 144 40.3
FAN08G3301 Fragaria x ananassa HOM05D000248 ORTHO05D017958 3.0e-13 80.5 373 25.7
RcHm_v2.0_Chr2g0102741 Rosa chinensis HOM05D001084 ORTHO05D001275 3.9e-13 80.1 371 26.4
RcHm_v2.0_Chr2g0104761 Rosa chinensis HOM05D000529 ORTHO05D000472 3.9e-13 80.1 136 40.4
FvH4_1g15040 Fragaria vesca HOM05D008495 ORTHO05D020679 8.7e-13 79.0 147 40.1
FvH4_5g11100 Fragaria vesca HOM05D000248 ORTHO05D000146 8.7e-13 79.0 362 27.1
FAN08G0175 Fragaria x ananassa HOM05D030830 ORTHO05D035356 8.7e-13 79.0 386 25.9
FAN08G1641 Fragaria x ananassa HOM05D000083 ORTHO05D025348 8.7e-13 79.0 368 27.2
FAN23G0627 Fragaria x ananassa HOM05D000046 ORTHO05D020739 8.7e-13 79.0 134 40.3
RcHm_v2.0_Chr2g0104731 Rosa chinensis HOM05D000577 ORTHO05D003509 8.7e-13 79.0 353 30.0
FAN18G3118 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.5e-12 78.2 360 26.1
Prupe.7G139700 Prunus persica HOM05D000529 ORTHO05D000472 1.9e-12 77.8 146 37.0
RcHm_v2.0_Chr6g0285471 Rosa chinensis HOM05D000529 ORTHO05D000472 1.9e-12 77.8 146 42.5
Prupe.7G140400 Prunus persica HOM05D000529 ORTHO05D020679 1.3e-11 75.1 143 32.9
FAN28G0579 Fragaria x ananassa HOM05D008495 ORTHO05D010311 1.6e-11 74.7 290 31.4
RcHm_v2.0_Chr2g0104741 Rosa chinensis HOM05D000529 ORTHO05D000472 2.1e-11 74.3 374 26.5
FvH4_5g11200 Fragaria vesca HOM05D000248 ORTHO05D017958 4.8e-11 73.2 352 27.6
FvH4_1g13670 Fragaria vesca HOM05D008495 ORTHO05D012517 6.2e-11 72.8 374 27.8
MD02G1164300 Malus domestica HOM05D000529 ORTHO05D000472 8.1e-11 72.4 137 38.7
RcHm_v2.0_Chr2g0104201 Rosa chinensis HOM05D008495 ORTHO05D010311 1.4e-10 71.6 108 41.7
FvH4_1g15270 Fragaria vesca HOM05D000046 ORTHO05D010311 1.8e-10 71.2 142 36.6
arahy.Tifrunner.gnm1.ann1.RP061L Arachis hypogaea HOM05D000033 ORTHO05D038917 2.4e-10 70.9 150 34.0
arahy.Tifrunner.gnm1.ann1.3N9TDM Arachis hypogaea HOM05D000033 ORTHO05D019823 3.1e-10 70.5 146 34.9
FAN23G2692 Fragaria x ananassa HOM05D000529 ORTHO05D000472 3.1e-10 70.5 127 38.6
FAN26G3207 Fragaria x ananassa HOM05D000529 ORTHO05D000472 3.1e-10 70.5 178 32.6
Prupe.5G127600 Prunus persica HOM05D000529 ORTHO05D010311 3.1e-10 70.5 155 31.6
RcHm_v2.0_Chr3g0480561 Rosa chinensis HOM05D000529 ORTHO05D000472 3.1e-10 70.5 106 42.5
FAN19G2244 Fragaria x ananassa HOM05D000046 ORTHO05D020635 4.0e-10 70.1 147 36.1
FvH4_1g15120 Fragaria vesca HOM05D000529 ORTHO05D000472 5.3e-10 69.7 133 36.1
CsaV3_6G043030 Cucumis sativus L. HOM05D000529 ORTHO05D000472 6.9e-10 69.3 126 35.7
MD02G1164700 Malus domestica HOM05D000529 ORTHO05D000472 6.9e-10 69.3 123 37.4
FAN13G2602 Fragaria x ananassa HOM05D000248 ORTHO05D017958 9.0e-10 68.9 351 26.8
FAN13G0180 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.5e-09 68.2 371 24.3
FAN13G1884 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.5e-09 68.2 371 24.3
FAN13G2559 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.5e-09 68.2 371 24.3
FAN13G3219 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.5e-09 68.2 371 24.3
FAN15G0087 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.5e-09 68.2 142 38.0
FAN18G4033 Fragaria x ananassa HOM05D000248 ORTHO05D017958 1.5e-09 68.2 352 27.0
FAN23G2720 Fragaria x ananassa HOM05D000046 ORTHO05D020635 1.5e-09 68.2 144 36.8
FvH4_5g11120 Fragaria vesca HOM05D000248 ORTHO05D017958 2.6e-09 67.4 352 26.7
FvH4_5g11230 Fragaria vesca HOM05D000248 ORTHO05D017958 2.6e-09 67.4 352 26.7
FAN18G1596 Fragaria x ananassa HOM05D000248 ORTHO05D017958 3.4e-09 67.0 352 27.0
MD02G1119400 Malus domestica HOM05D008495 ORTHO05D020679 3.4e-09 67.0 138 36.2
MD02G1165500 Malus domestica HOM05D000529 ORTHO05D000472 3.4e-09 67.0 138 37.7
RcHm_v2.0_Chr7g0186641 Rosa chinensis HOM05D000248 ORTHO05D000146 3.4e-09 67.0 361 25.5
MELO3C007539.2 Cucumis melo HOM05D000529 ORTHO05D000472 4.5e-09 66.6 126 34.1
FvH4_1g15430 Fragaria vesca HOM05D000046 ORTHO05D020635 4.5e-09 66.6 144 35.4
FAN13G2794 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.5e-09 66.6 363 24.0
FAN13G3019 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.5e-09 66.6 363 24.0
FvH4_1g15170 Fragaria vesca HOM05D000529 ORTHO05D000472 5.8e-09 66.2 130 36.2
FAN13G2246 Fragaria x ananassa HOM05D000248 ORTHO05D000146 5.8e-09 66.2 371 24.0
MD15G1276900 Malus domestica HOM05D000529 ORTHO05D000472 5.8e-09 66.2 123 36.6
Prupe.7G139800 Prunus persica HOM05D000529 ORTHO05D000472 5.8e-09 66.2 155 31.0
FAN28G0855 Fragaria x ananassa HOM05D000529 ORTHO05D000472 7.6e-09 65.9 127 37.8
arahy.Tifrunner.gnm1.ann1.50YJF0 Arachis hypogaea HOM05D000033 ORTHO05D085538 9.9e-09 65.5 148 32.4
FAN13G1491 Fragaria x ananassa HOM05D000248 ORTHO05D000146 9.9e-09 65.5 361 23.8
FAN13G1701 Fragaria x ananassa HOM05D000248 ORTHO05D000146 9.9e-09 65.5 361 23.8
FAN26G2300 Fragaria x ananassa HOM05D000046 ORTHO05D020635 1.3e-08 65.1 144 35.4
FAN26G2562 Fragaria x ananassa HOM05D000046 ORTHO05D207025 1.3e-08 65.1 144 34.7
GSVIVG01007144001 Vitis vinifera HOM05D000529 ORTHO05D000472 1.3e-08 65.1 134 32.1
FvH4_1g15350 Fragaria vesca HOM05D008495 ORTHO05D010311 1.7e-08 64.7 144 36.1
RcHm_v2.0_Chr2g0104171 Rosa chinensis HOM05D000529 ORTHO05D000472 1.7e-08 64.7 159 32.1
RcHm_v2.0_Chr2g0104831 Rosa chinensis HOM05D000083 ORTHO05D002708 1.7e-08 64.7 142 33.8
ClCG01G016630 Citrullus lanatus HOM05D000529 ORTHO05D000472 2.2e-08 64.3 133 33.1
RcHm_v2.0_Chr3g0473971 Rosa chinensis HOM05D000529 ORTHO05D000472 2.2e-08 64.3 142 33.8
Prupe.7G139600 Prunus persica HOM05D000529 ORTHO05D000472 2.9e-08 63.9 127 37.8
FAN02G4337 Fragaria x ananassa HOM05D000529 ORTHO05D010311 3.8e-08 63.5 146 33.6
FvH4_1g15220 Fragaria vesca HOM05D000529 ORTHO05D000472 6.4e-08 62.8 96 42.7
FAN18G2904 Fragaria x ananassa HOM05D008495 ORTHO05D012517 6.4e-08 62.8 110 38.2
MD02G1164800 Malus domestica HOM05D000529 ORTHO05D000472 6.4e-08 62.8 146 34.2
arahy.Tifrunner.gnm1.ann1.KL9X3Y Arachis hypogaea HOM05D003581 ORTHO05D004332 8.4e-08 62.4 190 34.2
Cpa.g.sc6.402 Carica papaya HOM05D000529 ORTHO05D000472 8.4e-08 62.4 134 33.6
MD02G1165300 Malus domestica HOM05D000529 ORTHO05D000472 8.4e-08 62.4 142 33.8
Prupe.5G127700 Prunus persica HOM05D000529 ORTHO05D010311 8.4e-08 62.4 216 28.2
RcHm_v2.0_Chr2g0104621 Rosa chinensis HOM05D000046 ORTHO05D020635 1.4e-07 61.6 143 35.7
CAN.G836.51 Capsicum annuum HOM05D000529 ORTHO05D000472 1.9e-07 61.2 151 33.1
GSVIVG01003569001 Vitis vinifera HOM05D000529 ORTHO05D019823 1.9e-07 61.2 134 31.3
FvH4_1g13660 Fragaria vesca HOM05D001084 ORTHO05D001275 2.4e-07 60.8 357 26.6
FAN24G2157 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.4e-07 60.8 152 34.2
FvH4_6g18970 Fragaria vesca HOM05D000529 ORTHO05D000472 5.4e-07 59.7 146 32.2
Prupe.7G139500 Prunus persica HOM05D000529 ORTHO05D000472 5.4e-07 59.7 145 32.4
RcHm_v2.0_Chr2g0104381 Rosa chinensis HOM05D000529 ORTHO05D000472 5.4e-07 59.7 110 35.5
FvH4_1g15090 Fragaria vesca HOM05D000529 ORTHO05D000472 7.1e-07 59.3 140 34.3
FvH4_1g15230 Fragaria vesca HOM05D000529 ORTHO05D000472 7.1e-07 59.3 129 34.9
FvH4_2g19760 Fragaria vesca HOM05D000529 ORTHO05D000472 7.1e-07 59.3 152 33.6
FvH4_5g03530 Fragaria vesca HOM05D008495 ORTHO05D020679 7.1e-07 59.3 84 38.1
FAN28G0545 Fragaria x ananassa HOM05D000529 ORTHO05D000472 7.1e-07 59.3 126 36.5
RcHm_v2.0_Chr2g0104151 Rosa chinensis HOM05D000529 ORTHO05D000472 7.1e-07 59.3 124 33.9
RcHm_v2.0_Chr2g0104181 Rosa chinensis HOM05D000529 ORTHO05D000472 7.1e-07 59.3 145 31.7
arahy.Tifrunner.gnm1.ann1.W15MA1 Arachis hypogaea HOM05D000139 ORTHO05D000103 9.3e-07 58.9 136 32.4
FAN18G0250 Fragaria x ananassa HOM05D008495 ORTHO05D012517 9.3e-07 58.9 107 36.4
arahy.Tifrunner.gnm1.ann1.AANK3P Arachis hypogaea HOM05D000033 ORTHO05D083727 1.2e-06 58.5 234 27.4
FAN19G2597 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.2e-06 58.5 129 34.1
RcHm_v2.0_Chr2g0104431 Rosa chinensis HOM05D000529 ORTHO05D000472 1.6e-06 58.2 130 35.4
FAN09G3823 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.1e-06 57.8 130 34.6
FAN28G2498 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.1e-06 57.8 107 38.3
FAN28G0376 Fragaria x ananassa HOM05D000529 ORTHO05D000472 3.5e-06 57.0 322 25.8
FAN28G1580 Fragaria x ananassa HOM05D000529 ORTHO05D000472 3.5e-06 57.0 322 25.8
RcHm_v2.0_Chr2g0104661 Rosa chinensis HOM05D019262 ORTHO05D017968 3.5e-06 57.0 142 35.2
FvH4_3g12820 Fragaria vesca HOM05D000529 ORTHO05D010311 4.6e-06 56.6 129 34.9
FvH4_5g11220 Fragaria vesca HOM05D000248 ORTHO05D017958 4.6e-06 56.6 302 26.5
FAN23G2222 Fragaria x ananassa HOM05D000529 ORTHO05D000472 4.6e-06 56.6 322 25.8
QL02p078112 Quercus lobata HOM05D000529 ORTHO05D000472 4.6e-06 56.6 109 32.1
QL93p0205_0245 Quercus lobata HOM05D000529 ORTHO05D000472 4.6e-06 56.6 109 32.1
RcHm_v2.0_Chr2g0104191 Rosa chinensis HOM05D000529 ORTHO05D000472 4.6e-06 56.6 132 34.1
RcHm_v2.0_Chr2g0104391 Rosa chinensis HOM05D000529 ORTHO05D000472 4.6e-06 56.6 103 39.8
arahy.Tifrunner.gnm1.ann1.XFEU61 Arachis hypogaea HOM05D000139 ORTHO05D000103 7.9e-06 55.8 136 31.6


User provided reference genes

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