Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 1.1e-124 449.9 221 100.0
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.5e-124 448.7 221 99.5
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.3e-124 448.4 221 99.1
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.2e-123 446.4 221 99.1
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.4e-122 443.0 222 98.6
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 5.1e-117 424.5 221 94.1
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 1.9e-111 406.0 221 89.6
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 6.2e-107 391.0 221 86.0
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 1.1e-106 390.2 221 86.0
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.5e-105 386.3 221 86.4
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 1.5e-105 386.3 221 84.6
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 2.6e-105 385.6 221 85.1
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 3.4e-105 385.2 221 84.6
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 4.5e-105 384.8 221 84.6
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 5.8e-105 384.4 221 84.6
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 7.6e-105 384.0 221 84.2
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 1.3e-104 383.3 221 83.7
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 1.3e-104 383.3 221 85.1
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 2.2e-104 382.5 222 84.7
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 3.2e-103 378.6 221 83.3
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 3.2e-103 378.6 221 83.7
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 5.5e-103 377.9 221 85.5
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 5.5e-103 377.9 221 84.6
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 7.1e-103 377.5 221 84.6
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 2.1e-102 375.9 221 82.4
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 3.5e-102 375.2 221 83.3
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 3.5e-102 375.2 221 82.8
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 4.6e-102 374.8 221 83.7
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 6.0e-102 374.4 221 82.8
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 7.9e-102 374.0 221 82.8
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.8e-101 372.9 221 84.2
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 3.9e-101 371.7 239 77.8
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 3.9e-101 371.7 221 82.8
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 5.1e-101 371.3 221 81.9
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 6.7e-101 370.9 221 81.0
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 1.5e-100 369.8 221 82.4
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 2.8e-99 365.5 221 79.6
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 4.8e-99 364.8 222 79.7
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 8.1e-99 364.0 222 79.3
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 8.1e-99 364.0 221 81.0
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 1.8e-98 362.8 222 78.8
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 2.4e-98 362.5 221 79.6
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 3.1e-98 362.1 221 79.2
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 5.3e-98 361.3 221 79.6
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 9.0e-98 360.5 221 80.1
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 9.0e-98 360.5 221 80.5
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 4.5e-97 358.2 221 80.5
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 4.5e-97 358.2 221 80.1
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 4.5e-97 358.2 221 78.3
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.0e-96 357.1 222 77.9
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 2.9e-96 355.5 221 79.6
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 2.9e-96 355.5 221 78.7
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 2.9e-96 355.5 221 79.2
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 6.5e-96 354.4 221 79.6
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 6.5e-96 354.4 221 79.2
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 8.4e-96 354.0 221 78.7
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 1.4e-95 353.2 221 76.5
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 1.9e-95 352.8 221 78.3
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 1.2e-94 350.1 230 77.4
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.2e-94 350.1 221 76.5
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 2.1e-94 349.4 221 77.4
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 2.1e-94 349.4 197 86.3
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 2.7e-94 349.0 221 78.3
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 2.7e-94 349.0 221 79.6
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.3e-93 346.7 221 78.3
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 6.7e-93 344.4 223 78.0
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 8.7e-93 344.0 221 78.7
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 8.7e-93 344.0 221 78.7
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.1e-92 343.6 197 83.8
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.5e-92 343.2 221 77.8
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 5.7e-92 341.3 195 85.1
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 5.7e-92 341.3 221 76.0
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 7.4e-92 340.9 200 83.5
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.3e-91 340.1 195 84.1
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 5.3e-90 334.7 222 75.7
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 6.9e-90 334.3 222 74.3
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 6.9e-90 334.3 222 75.7
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 9.0e-90 334.0 199 83.4
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.2e-89 333.6 195 82.6
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 1.5e-89 333.2 234 73.5
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 7.6e-89 330.9 195 82.1
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 1.3e-88 330.1 195 82.1
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 1.3e-88 330.1 213 76.5
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.7e-88 329.7 195 81.5
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 2.5e-87 325.9 195 82.6
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.2e-87 325.5 199 78.9
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 5.5e-87 324.7 301 59.1
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 7.2e-87 324.3 224 73.7
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 7.2e-87 324.3 224 73.7
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 7.2e-87 324.3 224 74.1
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 1.2e-86 323.6 222 72.1
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 1.6e-86 323.2 223 72.6
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 1.6e-86 323.2 222 72.5
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 1.6e-86 323.2 223 72.6
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.1e-86 322.8 196 79.6
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 3.6e-86 322.0 224 73.2
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 3.9e-85 318.5 224 72.3
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 8.7e-85 317.4 222 71.6
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 1.1e-84 317.0 224 72.8
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.1e-84 317.0 195 80.0
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.5e-84 315.8 223 72.6
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.5e-84 315.8 223 72.6
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 2.2e-83 312.8 221 70.1
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.8e-83 312.4 212 72.6
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.0e-81 306.2 221 69.7
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 4.5e-81 305.1 183 78.7
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.0e-80 303.9 290 57.9
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 6.5e-80 301.2 213 72.3
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 2.1e-78 296.2 221 67.9
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.0e-77 293.9 198 74.7
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 1.8e-77 293.1 164 86.6
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 3.0e-77 292.4 194 74.7
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 5.1e-77 291.6 206 72.8
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 3.1e-74 282.3 221 64.7
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 3.4e-73 278.9 221 62.9
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 5.0e-72 275.0 227 63.4
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 5.0e-72 275.0 227 63.4
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 6.5e-72 274.6 173 76.3
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 8.5e-72 274.2 215 64.7
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 2.5e-71 272.7 215 65.6
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 4.2e-71 271.9 180 76.7
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 9.4e-71 270.8 170 78.8
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 2.1e-70 269.6 222 63.5
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 8.2e-67 257.7 221 60.6
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 1.4e-66 256.9 159 80.5
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 7.0e-66 254.6 222 58.6
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 8.5e-64 247.7 197 65.5
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 2.5e-63 246.1 222 55.9
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.1e-62 243.0 223 56.5
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.1e-62 243.0 195 64.6
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.6e-60 236.1 170 70.6
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 4.1e-58 228.8 197 62.9
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 1.3e-48 197.2 163 62.6
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 6.5e-48 194.9 221 49.3
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 2.5e-47 193.0 184 56.5
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 2.3e-45 186.4 153 60.1
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 8.3e-43 177.9 93 87.1
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 4.4e-36 155.6 250 42.4
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 5.7e-36 155.2 100 77.0
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 1.3e-35 154.1 222 36.9
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.9e-35 152.1 84 90.5
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 7.8e-33 144.8 230 38.3
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 2.0e-28 130.2 84 71.4
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 3.4e-28 129.4 220 36.8
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 6.0e-25 118.6 142 46.5
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 3.9e-24 115.9 84 70.2
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.4e-20 102.8 94 57.4
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 2.0e-12 77.0 144 39.6
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 1.6e-09 67.4 205 25.9


User provided reference genes

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