Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 0.0e+00 1333.2 673 100.0
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 0.0e+00 1277.3 671 95.5
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 0.0e+00 1272.3 703 92.3
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 0.0e+00 1257.7 657 96.2
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 0.0e+00 1209.9 657 93.3
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 0.0e+00 1122.8 673 84.7
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 1.9e-308 1062.0 679 80.7
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 1.9e-247 859.4 700 65.0
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 2.7e-246 855.5 676 67.6
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 6.4e-187 658.3 693 53.4
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 6.4e-187 658.3 699 50.2
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 1.2e-172 610.9 674 50.9
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 7.6e-172 608.2 719 48.0
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 4.1e-170 602.4 685 50.4
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 5.4e-170 602.1 597 52.9
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 3.5e-169 599.4 689 49.1
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 1.7e-168 597.0 690 50.3
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 1.9e-167 593.6 716 48.6
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 1.2e-166 590.9 684 48.7
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 3.1e-165 586.3 674 50.1
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 1.3e-158 564.3 686 48.1
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 1.7e-155 553.9 696 46.4
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 2.7e-153 546.6 693 46.9
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.9e-151 540.4 674 47.8
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 3.3e-151 539.7 687 45.0
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 9.6e-151 538.1 684 46.3
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 2.8e-150 536.6 688 45.1
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 7.6e-148 528.5 674 47.0
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 2.9e-147 526.6 673 47.0
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 1.1e-146 524.6 694 43.2
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 7.9e-145 518.5 684 44.0
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 6.7e-144 515.4 695 44.0
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 1.1e-143 514.6 617 47.0
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 4.8e-142 509.2 681 44.8
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 5.3e-141 505.8 687 44.5
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 1.0e-139 501.5 675 42.5
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 8.4e-139 498.4 691 41.8
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 1.2e-137 494.6 674 44.4
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 3.3e-135 486.5 685 42.5
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 1.4e-130 471.1 681 41.6
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 1.9e-130 470.7 680 42.8
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 2.5e-130 470.3 551 47.7
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 3.0e-128 463.4 534 49.6
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 6.3e-126 455.7 677 40.6
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 8.2e-126 455.3 685 41.2
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 1.1e-125 454.9 697 40.5
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 6.5e-123 445.7 690 40.6
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 1.1e-122 444.9 672 40.5
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 9.4e-122 441.8 693 41.0
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 2.7e-121 440.3 683 40.3
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 3.6e-121 439.9 698 40.1
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 3.6e-121 439.9 664 41.3
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 3.9e-120 436.4 684 40.1
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 2.5e-119 433.7 674 40.5
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 3.3e-119 433.3 651 40.2
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 2.2e-118 430.6 708 40.5
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 1.8e-117 427.6 671 40.2
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 4.1e-117 426.4 712 39.2
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 5.3e-117 426.0 696 40.2
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 1.5e-116 424.5 682 38.7
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 3.4e-116 423.3 676 39.1
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 1.0e-115 421.8 573 42.2
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 1.4e-114 417.9 692 39.2
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 5.5e-114 416.0 683 40.4
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 2.1e-113 414.1 596 41.1
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 3.6e-113 413.3 660 39.1
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 4.7e-113 412.9 684 38.7
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 4.7e-113 412.9 693 40.3
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 1.0e-112 411.8 672 38.8
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 1.4e-112 411.4 591 41.8
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 5.7e-111 406.0 710 39.0
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 8.2e-110 402.1 678 38.2
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 1.4e-109 401.4 668 38.5
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 5.3e-109 399.4 553 43.6
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 5.9e-108 396.0 685 38.2
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 6.5e-107 392.5 316 65.5
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 2.7e-105 387.1 693 38.7
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 8.0e-105 385.6 666 37.7
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 1.4e-104 384.8 618 40.0
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 2.6e-103 380.6 509 43.6
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 4.8e-102 376.3 608 37.8
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 5.9e-100 369.4 723 34.3
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.2e-95 355.1 191 92.1
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 3.4e-95 353.6 738 35.2
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 5.7e-95 352.8 574 39.2
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 5.7e-95 352.8 708 36.6
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 1.6e-92 344.7 409 46.2
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 1.7e-91 341.3 438 44.7
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 8.5e-91 339.0 693 36.7
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 1.0e-88 332.0 581 37.3
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 1.0e-88 332.0 668 35.2
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 3.1e-85 320.5 681 34.5
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 9.2e-85 318.9 366 46.4
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 2.0e-84 317.8 441 43.3
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 7.0e-77 292.7 670 34.2
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 3.9e-75 287.0 604 34.8
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 3.9e-75 287.0 604 35.1
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 8.6e-75 285.8 389 39.8
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 4.4e-71 273.5 688 31.7
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 3.7e-62 243.8 390 40.3
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 6.0e-60 236.5 320 41.6
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.3e-41 175.6 92 91.3
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.3e-41 175.6 92 91.3
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 8.7e-35 152.9 373 30.8
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 5.3e-32 143.7 149 53.7
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 4.2e-29 134.0 98 74.5
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.9e-26 125.2 165 44.8
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.2e-23 115.9 136 46.3
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 4.2e-21 107.5 225 34.7
FAN28G0452 Fragaria x ananassa HOM05D006685 ORTHO05D008244 7.1e-21 106.7 57 94.7
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 4.3e-18 97.4 636 23.6
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 5.3e-16 90.5 474 24.5
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.7e-14 85.5 372 26.3
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 8.5e-14 83.2 60 68.3
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 2.7e-12 78.2 216 28.7
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 2.8e-09 68.2 140 34.3
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 3.1e-08 64.7 57 50.9
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.5e-07 62.4 190 29.5


User provided reference genes

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