Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g14510 Fragaria vesca HOM05D007578 ORTHO05D009497 2.7e-56 222.2 154 100.0
FAN26G3047 Fragaria x ananassa HOM05D007578 ORTHO05D009497 1.7e-55 219.5 154 98.7
FAN19G1163 Fragaria x ananassa HOM05D007578 ORTHO05D009497 1.6e-53 213.0 161 95.0
FAN23G2171 Fragaria x ananassa HOM05D007578 ORTHO05D009497 1.0e-52 210.3 154 96.8
RcHm_v2.0_Chr2g0103251 Rosa chinensis HOM05D007578 ORTHO05D009497 4.4e-43 178.3 164 82.9
Prupe.7G145300 Prunus persica HOM05D007578 ORTHO05D009497 2.6e-27 125.9 157 70.1
MD15G1273300 Malus domestica HOM05D007578 ORTHO05D009497 3.8e-26 122.1 166 66.9
FAN28G2485 Fragaria x ananassa HOM05D007578 ORTHO05D009497 2.3e-23 112.8 122 82.8
MD02G1158500 Malus domestica HOM05D007578 ORTHO05D009497 2.5e-22 109.4 166 64.5
Lj4P136T24 Lonicera japonica HOM05D007578 ORTHO05D009497 1.8e-20 103.2 126 71.4
Peaxi162Scf00535g00071 Petunia axillaris HOM05D007578 ORTHO05D009497 1.5e-19 100.1 128 64.8
Nitab4.5_0000108g0140 Nicotiana tabacum HOM05D007578 ORTHO05D009497 2.9e-18 95.9 137 62.8
Nitab4.5_0007463g0020 Nicotiana tabacum HOM05D007578 ORTHO05D009497 8.4e-18 94.4 137 62.0
QL06p044247 Quercus lobata HOM05D007578 ORTHO05D009497 1.1e-17 94.0 134 63.4
Cc07_g05400 Coffea canephora HOM05D007578 ORTHO05D009497 1.9e-17 93.2 164 54.3
Manes.13G132100 Manihot esculenta HOM05D007578 ORTHO05D009497 9.3e-17 90.9 139 64.0
Psat0s4627g0160 Pisum sativum HOM05D007578 ORTHO05D009497 9.3e-17 90.9 124 70.2
PGSC0003DMG400037576 Solanum tuberosum HOM05D007578 ORTHO05D009497 3.5e-16 89.0 131 62.6
TPR.G29848 Trifolium pratense HOM05D007578 ORTHO05D009497 6.0e-16 88.2 124 65.3
Sopen02g034790 Solanum pennellii HOM05D007578 ORTHO05D009497 1.3e-15 87.0 138 60.9
Aa31LG7G13200 Aethionema arabicum HOM05D007578 ORTHO05D009497 2.3e-15 86.3 145 58.6
Ca_24809_v3 Cicer arietinum L. HOM05D007578 ORTHO05D009497 3.9e-15 85.5 141 56.0
Sed0003773 Sechium edule HOM05D007578 ORTHO05D009497 6.6e-15 84.7 142 62.0
CAN.G836.20 Capsicum annuum HOM05D007578 ORTHO05D009497 8.7e-15 84.3 122 63.9
DCAR_010946 Daucus carota HOM05D007578 ORTHO05D009497 8.7e-15 84.3 153 56.2
CiPaw.01G029100 Carya illinoinensis HOM05D007578 ORTHO05D009497 1.1e-14 84.0 140 62.1
Actinidia36527 Actinidia chinensis HOM05D007578 ORTHO05D009497 1.5e-14 83.6 133 61.7
Migut.H00501 Erythranthe guttata HOM05D007578 ORTHO05D009497 1.5e-14 83.6 112 60.7
Solyc02g090100.1 Solanum lycopersicum HOM05D007578 ORTHO05D009497 1.5e-14 83.6 138 60.1
Thecc.01G045800 Theobroma cacao HOM05D007578 ORTHO05D009497 1.5e-14 83.6 131 62.6
Ah.03g142130 Amaranthus hybridus HOM05D007578 ORTHO05D009497 1.9e-14 83.2 162 54.9
EL10Ac6g14844 Beta vulgaris HOM05D007578 ORTHO05D009497 2.5e-14 82.8 138 52.9
SGA_v2.0_scaffold15G07205 Striga asiatica HOM05D007578 ORTHO05D009497 2.5e-14 82.8 158 55.1
Sabra07G0029900 Salix brachista HOM05D007578 ORTHO05D009497 3.3e-14 82.4 154 57.8
MSTRG.23805 Avicennia marina HOM05D007578 ORTHO05D009497 4.3e-14 82.0 160 52.5
Hma1.2p1_0261F.1_g104930 Hydrangea macrophylla HOM05D007578 ORTHO05D009497 5.6e-14 81.6 148 56.1
Potri.007G034300 Populus trichocarpa HOM05D007578 ORTHO05D009497 5.6e-14 81.6 154 57.1
Gohir.A02G161500 Gossypium hirsutum HOM05D007578 ORTHO05D009497 1.6e-13 80.1 129 57.4
BcaB06g27923 Brassica carinata HOM05D007578 ORTHO05D009497 2.1e-13 79.7 137 61.3
Carub.0004s0288 Capsella rubella HOM05D007578 ORTHO05D009497 2.8e-13 79.3 131 62.6
CARHR114700 Cardamine hirsuta HOM05D007578 ORTHO05D009497 2.8e-13 79.3 131 63.4
PGR102G1240 Punica granatum HOM05D007578 ORTHO05D009497 2.8e-13 79.3 130 61.5
TAR376G0355 Trochodendron aralioides HOM05D007578 ORTHO05D009497 3.6e-13 79.0 143 56.6
Medtr5g018590 Medicago truncatula HOM05D007578 ORTHO05D009497 6.2e-13 78.2 130 58.5
Haze_15166 Corylus avellana HOM05D007578 ORTHO05D009497 8.1e-13 77.8 136 61.0
Sc03g0001220 Simmondsia chinensis HOM05D007578 ORTHO05D009497 8.1e-13 77.8 130 50.8
Rhsim06G0070400 Rhododendron simsii HOM05D002920 ORTHO05D009497 1.1e-12 77.4 150 55.3
A04p18050 Brassica napus HOM05D007578 ORTHO05D009497 1.4e-12 77.0 137 62.0
CSS0031523 Camellia sinensis var. sinensis HOM05D007578 ORTHO05D009497 1.4e-12 77.0 162 54.9
CSS0032257 Camellia sinensis var. sinensis HOM05D007578 ORTHO05D009497 1.4e-12 77.0 162 54.9
Duzib264G1198 Durio zibethinus HOM05D007578 ORTHO05D009497 1.4e-12 77.0 146 58.2
BraA04t17423Z Brassica rapa HOM05D007578 ORTHO05D009497 1.8e-12 76.6 137 61.3
Ciclev10026636m.g Citrus clementina HOM05D007578 ORTHO05D009497 1.8e-12 76.6 116 53.4
TAR628G0552 Trochodendron aralioides HOM05D007578 ORTHO05D009497 1.8e-12 76.6 124 63.7
AL4G13660 Arabidopsis lyrata HOM05D007578 ORTHO05D009497 2.4e-12 76.3 132 56.8
MBI07_g23234_MAGBIO Magnolia biondii HOM05D007578 ORTHO05D009497 2.4e-12 76.3 136 61.0
C04p52990 Brassica napus HOM05D007578 ORTHO05D009497 3.1e-12 75.9 133 62.4
BolC4t26860H Brassica oleracea HOM05D007578 ORTHO05D009497 3.1e-12 75.9 133 62.4
Lalb_Chr16g0378091 Lupinus albus HOM05D007578 ORTHO05D009497 3.1e-12 75.9 147 57.1
Lalb_Chr16g0378311 Lupinus albus HOM05D007578 ORTHO05D009497 3.1e-12 75.9 147 57.1
Duzib147G1180 Durio zibethinus HOM05D007578 ORTHO05D009497 4.0e-12 75.5 143 58.7
AT2G23670 Arabidopsis thaliana HOM05D007578 ORTHO05D009497 9.0e-12 74.3 140 59.3
Sp4g02640 Schrenkiella parvula HOM05D007578 ORTHO05D009497 9.0e-12 74.3 130 60.0
SalBow1G1613 Salvia bowleyana HOM05D007578 ORTHO05D009497 1.2e-11 73.9 119 59.7
CANSAT01G2356 Cannabis sativa HOM05D007578 ORTHO05D009497 1.5e-11 73.6 143 57.3
Gorai.003G019400 Gossypium raimondii HOM05D007578 ORTHO05D009497 2.0e-11 73.2 129 55.0
Peaxi162Scf00150g00132 Petunia axillaris HOM05D007578 ORTHO05D009497 2.0e-11 73.2 97 71.1
COL.COLO4_22180 Corchorus olitorius HOM05D007578 ORTHO05D009497 2.6e-11 72.8 147 56.5
ClCG02G013060 Citrullus lanatus HOM05D007578 ORTHO05D009497 3.4e-11 72.4 165 56.4
Thhalv10000353m.g Eutrema salsugineum HOM05D007578 ORTHO05D009497 3.4e-11 72.4 136 59.6
Glyma.11G060900 Glycine max HOM05D007578 ORTHO05D009497 3.4e-11 72.4 141 56.0
HanXRQChr12g0378461 Helianthus annuus HOM05D007578 ORTHO05D009497 3.4e-11 72.4 137 40.1
arahy.Tifrunner.gnm1.ann1.UX6CPD Arachis hypogaea HOM05D007578 ORTHO05D009497 4.5e-11 72.0 153 56.9
Lsat_1_v5_gn_3_94000 Lactuca sativa HOM05D007578 ORTHO05D009497 4.5e-11 72.0 128 60.2
arahy.Tifrunner.gnm1.ann1.25C3YR Arachis hypogaea HOM05D007578 ORTHO05D009497 1.3e-10 70.5 153 56.2
Atru.chr3.471 Acer truncatum HOM05D007578 ORTHO05D009497 1.7e-10 70.1 156 51.3
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 1.7e-10 70.1 140 56.4
CsaV3_2G017140 Cucumis sativus L. HOM05D007578 ORTHO05D009497 1.7e-10 70.1 164 53.7
TWI53G0440 Tripterygium wilfordii HOM05D007578 ORTHO05D009497 1.7e-10 70.1 146 54.8
Phvul.002G023600 Phaseolus vulgaris HOM05D007578 ORTHO05D009497 2.2e-10 69.7 141 57.4
Glyma.01G182600 Glycine max HOM05D007578 ORTHO05D009497 2.9e-10 69.3 148 57.4
Dinv26776 Davidia involucrata HOM05D007578 ORTHO05D009497 3.8e-10 68.9 125 58.4
Gohir.D03G019000 Gossypium hirsutum HOM05D007578 ORTHO05D009497 3.8e-10 68.9 125 55.2
Oeu032922.1 Olea europaea HOM05D007578 ORTHO05D009497 4.9e-10 68.6 161 49.1
THA.LOC104804219 Tarenaya hassleriana HOM05D007578 ORTHO05D009497 4.9e-10 68.6 135 58.5
MELO3C020917.2 Cucumis melo HOM05D007578 ORTHO05D009497 1.4e-09 67.0 162 51.9
Gohir.D11G048600 Gossypium hirsutum HOM05D007578 ORTHO05D009497 2.4e-09 66.2 139 56.8
CDE11G1131 Ceratophyllum demersum HOM05D007578 ORTHO05D009497 5.5e-09 65.1 124 49.2
CAN.G1525.2 Capsicum annuum HOM05D007578 ORTHO05D009497 7.1e-09 64.7 130 51.5
Gohir.A11G045100 Gossypium hirsutum HOM05D007578 ORTHO05D009497 7.1e-09 64.7 139 56.1
unitig_21.g20937 Utricularia gibba HOM05D000261 ORTHO05D001168 1.2e-08 63.9 156 50.6
Cpa.g.sc15.63 Carica papaya HOM05D007578 ORTHO05D009497 1.6e-08 63.5 161 54.0
ECA246G0471 Erigeron canadensis HOM05D007578 ORTHO05D009497 2.7e-08 62.8 109 60.6
PSO170G5738 Papaver somniferum HOM05D007578 ORTHO05D009497 2.7e-08 62.8 133 51.1
PSO017G5052 Papaver somniferum HOM05D007578 ORTHO05D009497 4.6e-08 62.0 133 51.1
Gorai.007G052200 Gossypium raimondii HOM05D007578 ORTHO05D009497 6.0e-08 61.6 139 55.4
HPP92_014833 Vanilla planifolia HOM05D007578 ORTHO05D009497 1.0e-07 60.8 123 48.8
Dinv39922 Davidia involucrata HOM05D007578 ORTHO05D009497 1.3e-07 60.5 186 44.1
Aqoxy2G01906 Aquilegia oxysepala HOM05D007578 ORTHO05D009497 2.3e-07 59.7 147 51.0
SEGI_26721 Sequoiadendron giganteum HOM05D020219 ORTHO05D023531 4.3e-06 55.5 149 47.7
ATR0787G067 Amborella trichopoda HOM05D007578 ORTHO05D009497 7.4e-06 54.7 158 41.8


User provided reference genes

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