Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g14071 Fragaria vesca HOM05D008040 ORTHO05D010075 0.0e+00 1098.6 519 100.0
FAN19G2417 Fragaria x ananassa HOM05D008040 ORTHO05D010075 2.3e-309 1064.7 519 96.9
FAN26G0836 Fragaria x ananassa HOM05D008040 ORTHO05D010075 1.2e-305 1052.4 519 95.4
FAN23G2403 Fragaria x ananassa HOM05D008040 ORTHO05D010075 1.4e-271 939.1 520 87.7
RcHm_v2.0_Chr2g0102901 Rosa chinensis HOM05D008040 ORTHO05D010075 1.7e-155 553.5 456 63.6
FAN28G1672 Fragaria x ananassa HOM05D008040 ORTHO05D010075 1.1e-151 540.8 265 96.2
RcHm_v2.0_Chr2g0102561 Rosa chinensis HOM05D008040 ORTHO05D010075 3.4e-140 502.7 521 54.5
FAN19G2662 Fragaria x ananassa HOM05D008040 ORTHO05D010075 2.2e-118 430.3 385 60.8
FAN28G2855 Fragaria x ananassa HOM05D008040 ORTHO05D010075 4.0e-112 409.5 227 87.2
FvH4_1g14191 Fragaria vesca HOM05D008040 ORTHO05D010075 1.8e-104 384.0 545 45.5
Prupe.7G151200 Prunus persica HOM05D008040 ORTHO05D010075 2.2e-70 270.8 471 40.3
MD12G1211200 Malus domestica HOM05D008040 ORTHO05D010075 4.6e-68 263.1 525 37.5
MD12G1051600 Malus domestica HOM05D008040 ORTHO05D010075 9.3e-61 238.8 426 37.6
EL10Ac2g04156 Beta vulgaris HOM05D008040 ORTHO05D010075 1.2e-36 158.7 412 31.1
QL04p017640 Quercus lobata HOM05D008040 ORTHO05D010075 9.7e-34 149.1 433 29.3
QL04p017690 Quercus lobata HOM05D008040 ORTHO05D010075 2.2e-33 147.9 432 28.7
Sabra08G0010200 Salix brachista HOM05D008040 ORTHO05D010075 8.2e-33 146.0 413 28.3
COL.COLO4_12486 Corchorus olitorius HOM05D008040 ORTHO05D010075 5.3e-32 143.3 416 28.8
AUR62017713 Chenopodium quinoa HOM05D008040 ORTHO05D010075 3.4e-31 140.6 416 28.1
AUR62035995 Chenopodium quinoa HOM05D008040 ORTHO05D010075 7.7e-31 139.4 406 29.3
TWI77G0815 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 4.6e-28 130.2 460 28.5
CSS0013591 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 1.4e-27 128.6 414 28.5
COL.COLO4_31566 Corchorus olitorius HOM05D008040 ORTHO05D010075 3.0e-27 127.5 470 27.9
CSS0010874 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 5.1e-27 126.7 414 28.3
AUR62008579 Chenopodium quinoa HOM05D008040 ORTHO05D010075 6.7e-27 126.3 418 27.5
COL.COLO4_31564 Corchorus olitorius HOM05D008040 ORTHO05D010075 8.8e-27 125.9 428 27.6
Potri.013G110300 Populus trichocarpa HOM05D008040 ORTHO05D010075 1.5e-26 125.2 402 28.6
COL.COLO4_31563 Corchorus olitorius HOM05D008040 ORTHO05D010075 2.6e-26 124.4 412 26.5
COL.COLO4_10414 Corchorus olitorius HOM05D008040 ORTHO05D010075 5.7e-26 123.2 411 27.5
COL.COLO4_30844 Corchorus olitorius HOM05D008040 ORTHO05D010075 5.7e-26 123.2 416 27.4
Potri.013G109900 Populus trichocarpa HOM05D008040 ORTHO05D010075 5.7e-26 123.2 412 28.9
CSS0016313 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 7.4e-26 122.9 457 26.3
Oeu009728.1 Olea europaea HOM05D008040 ORTHO05D010075 7.4e-26 122.9 309 30.4
COL.COLO4_31567 Corchorus olitorius HOM05D008040 ORTHO05D010075 2.8e-25 120.9 409 27.1
Oeu009732.1 Olea europaea HOM05D001586 ORTHO05D001543 1.1e-24 119.0 410 27.8
MD15G1268400 Malus domestica HOM05D008040 ORTHO05D010075 6.9e-24 116.3 234 36.8
Manes.09G072126 Manihot esculenta HOM05D008040 ORTHO05D010075 6.9e-24 116.3 406 25.1
SGA_v2.0_scaffold286G47111 Striga asiatica HOM05D008040 ORTHO05D010075 2.0e-23 114.8 446 27.1
TWI12G0677 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 2.0e-23 114.8 444 25.0
CSS0049849 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 1.3e-22 112.1 417 27.6
Ciclev10006596m.g Citrus clementina HOM05D008040 ORTHO05D010075 6.5e-22 109.8 417 25.9
SGA_v2.0_scaffold286G47115 Striga asiatica HOM05D008040 ORTHO05D010075 1.6e-20 105.1 314 28.3
vmacro17325 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 3.0e-19 100.9 269 30.9
SGA_v2.0_scaffold147G36326 Striga asiatica HOM05D008040 ORTHO05D010075 3.9e-19 100.5 280 28.2
Ciclev10026974m.g Citrus clementina HOM05D008040 ORTHO05D010075 2.6e-18 97.8 283 27.6
COL.COLO4_10419 Corchorus olitorius HOM05D026534 ORTHO05D010075 2.6e-18 97.8 414 24.9
Ah.07g206250 Amaranthus hybridus HOM05D008040 ORTHO05D010075 1.7e-17 95.1 271 29.5
Aqoxy6G00905 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 1.7e-17 95.1 417 24.5
PSO761G0098 Papaver somniferum HOM05D008040 ORTHO05D010075 2.8e-17 94.4 345 27.5
vmacro17323 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 3.7e-17 94.0 158 38.6
TWI12G0410 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 1.6e-15 88.6 303 26.4
PSO339G3463 Papaver somniferum HOM05D008040 ORTHO05D010075 5.9e-15 86.7 281 28.1
DCAR_021781 Daucus carota HOM05D008040 ORTHO05D010075 2.9e-14 84.3 234 29.5
Ah.06g196070 Amaranthus hybridus HOM05D008040 ORTHO05D010075 3.8e-14 84.0 272 29.0
Ah.02g122840 Amaranthus hybridus HOM05D008040 ORTHO05D010075 1.2e-12 79.0 251 28.3
Sabra08G0010400 Salix brachista HOM05D008040 ORTHO05D010075 1.2e-12 79.0 233 29.2
vmacro17324 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 2.3e-11 74.7 103 41.7
Duzib205G1254 Durio zibethinus HOM05D000664 ORTHO05D000491 8.8e-11 72.8 178 32.6
Gohir.D12G199200 Gossypium hirsutum HOM05D000664 ORTHO05D000491 1.5e-10 72.0 205 25.4
Potri.013G109701 Populus trichocarpa HOM05D008040 ORTHO05D010075 2.6e-10 71.2 215 29.3
MBI05_g20724_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 4.4e-10 70.5 307 25.1
Gorai.008G214400 Gossypium raimondii HOM05D000664 ORTHO05D000491 5.7e-10 70.1 205 24.9
PSO017G2897 Papaver somniferum HOM05D008040 ORTHO05D010075 9.7e-10 69.3 267 27.3
Potri.008G016300 Populus trichocarpa HOM05D008040 ORTHO05D010075 2.8e-09 67.8 73 49.3
Lj2P385T13 Lonicera japonica HOM05D000664 ORTHO05D000491 6.3e-09 66.6 228 29.8
Rhsim08G0168000 Rhododendron simsii HOM05D000664 ORTHO05D000491 6.3e-09 66.6 296 23.3
Dinv26463 Davidia involucrata HOM05D000664 ORTHO05D000491 1.8e-08 65.1 205 27.3
Rhsim03G0248800 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.8e-08 65.1 90 41.1
Thecc.03G149500 Theobroma cacao HOM05D000664 ORTHO05D000491 2.4e-08 64.7 205 25.4
CSS0031414 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 3.1e-08 64.3 94 41.5
SGA_v2.0_scaffold136G35012 Striga asiatica HOM05D000664 ORTHO05D000491 3.1e-08 64.3 210 27.1
Rhsim01G0013700 Rhododendron simsii HOM05D000664 ORTHO05D000491 5.3e-08 63.5 161 29.8
Rhsim03G0249000 Rhododendron simsii HOM05D000664 ORTHO05D000491 5.3e-08 63.5 95 38.9
Atru.chr1.895 Acer truncatum HOM05D000664 ORTHO05D000491 7.0e-08 63.2 195 23.6
Potri.008G016150 Populus trichocarpa HOM05D008040 ORTHO05D010075 7.0e-08 63.2 72 45.8
SGA_v2.0_scaffold136G35030 Striga asiatica HOM05D000664 ORTHO05D000491 7.0e-08 63.2 212 25.9
Ciclev10006867m.g Citrus clementina HOM05D000664 ORTHO05D000491 9.1e-08 62.8 91 39.6
Medtr3g011190 Medicago truncatula HOM05D011629 ORTHO05D013267 1.2e-07 62.4 323 22.6
Nitab4.5_0000032g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.2e-07 62.4 222 26.1
THA.LOC104801597 Tarenaya hassleriana HOM05D000664 ORTHO05D000491 1.6e-07 62.0 200 26.5
Rhsim01G0016900 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.0e-07 61.6 239 26.8
Duzib068G1024 Durio zibethinus HOM05D000664 ORTHO05D000491 2.7e-07 61.2 286 21.7
QL04p017704 Quercus lobata HOM05D008040 ORTHO05D010075 4.5e-07 60.5 106 34.0
RcHm_v2.0_Chr4g0388051 Rosa chinensis HOM05D000664 ORTHO05D000491 4.5e-07 60.5 94 38.3
TAR626G1239 Trochodendron aralioides HOM05D000664 ORTHO05D000491 4.5e-07 60.5 162 29.6
Aqoxy3G00584 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 5.9e-07 60.1 177 27.1
Rhsim01G0017000 Rhododendron simsii HOM05D000664 ORTHO05D000491 5.9e-07 60.1 298 23.5
AUR62004782 Chenopodium quinoa HOM05D000664 ORTHO05D000491 7.7e-07 59.7 204 29.4
Migut.J01669 Erythranthe guttata HOM05D000664 ORTHO05D000491 7.7e-07 59.7 225 24.0
Os01g0876300 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D000491 1.0e-06 59.3 151 27.8
Rhsim01G0013800 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.3e-06 58.9 91 38.5
CSS0037447 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 1.7e-06 58.5 104 34.6
FAN09G3500 Fragaria x ananassa HOM05D002893 ORTHO05D003387 1.7e-06 58.5 147 35.4
Sabra01G0178200 Salix brachista HOM05D000664 ORTHO05D000491 1.7e-06 58.5 292 25.3
RcHm_v2.0_Chr4g0398061 Rosa chinensis HOM05D000664 ORTHO05D000491 2.2e-06 58.2 288 22.9
FvH4_6g53072 Fragaria vesca HOM05D000664 ORTHO05D000491 2.9e-06 57.8 115 38.3
FAN27G2908 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.9e-06 57.8 176 26.7
Rhsim08G0238800 Rhododendron simsii HOM05D001729 ORTHO05D001155 2.9e-06 57.8 228 27.6
ECA232G0361 Erigeron canadensis HOM05D005822 ORTHO05D007267 3.8e-06 57.4 202 27.2
FAN14G3142 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.8e-06 57.4 147 35.4
Psat2g144440 Pisum sativum HOM05D011629 ORTHO05D013267 3.8e-06 57.4 130 30.8
Psat5g225280 Pisum sativum HOM05D011629 ORTHO05D013267 3.8e-06 57.4 143 30.8
Rhsim01G0013600 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.8e-06 57.4 67 44.8
Thecc.06G054800 Theobroma cacao HOM05D000664 ORTHO05D000491 3.8e-06 57.4 207 23.2
Duzib187G1349 Durio zibethinus HOM05D002420 ORTHO05D002422 5.0e-06 57.0 175 25.1
FvH4_6g02171 Fragaria vesca HOM05D001729 ORTHO05D001155 6.5e-06 56.6 123 33.3
Rhsim01G0018000 Rhododendron simsii HOM05D000664 ORTHO05D000491 6.5e-06 56.6 238 25.2
Sabra09G0127200 Salix brachista HOM05D001729 ORTHO05D001155 6.5e-06 56.6 243 23.9
PGR044G0383 Punica granatum HOM05D000664 ORTHO05D000491 8.5e-06 56.2 208 30.3
QL11p009094 Quercus lobata HOM05D001729 ORTHO05D001155 8.5e-06 56.2 232 24.6
vmacro06138 Vaccinium macrocarpon HOM05D000664 ORTHO05D000491 8.5e-06 56.2 93 36.6


User provided reference genes

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