Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 2119.7 1050 100.0
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 2050.0 1050 97.7
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1978.8 1052 92.4
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1951.4 1050 93.4
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1838.5 1055 89.1
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1754.2 1025 82.9
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1739.5 1045 81.0
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1581.2 1043 72.3
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1553.1 1048 71.6
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1539.2 1054 71.9
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1531.5 1041 71.0
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1525.0 1079 69.6
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1520.4 1045 70.0
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1511.9 1047 69.3
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1510.4 1042 69.9
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1494.2 1046 67.4
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1493.0 1042 68.8
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1488.0 1049 68.4
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1480.3 1050 67.2
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1473.0 1044 67.1
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1472.2 1041 67.5
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1465.3 1050 67.9
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1460.3 1045 67.0
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1456.8 1043 66.9
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1455.7 1044 67.8
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1453.7 1053 66.4
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1449.9 1056 66.9
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1447.2 1044 66.6
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1443.3 1047 65.8
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1439.1 1046 66.8
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1437.6 1051 65.7
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1436.4 1054 66.6
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1435.6 1055 66.4
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1435.2 1045 66.3
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1431.4 1054 66.2
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1431.0 1064 66.7
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1429.8 1050 66.5
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1429.8 1046 65.6
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1429.5 1040 66.3
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1428.7 1057 66.3
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1426.8 1062 64.8
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1426.8 1043 66.3
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1421.8 1046 64.9
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1420.6 1061 65.6
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1420.2 1066 65.6
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1398.6 1157 60.8
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1397.9 1051 64.2
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1389.8 1050 63.7
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1384.0 1050 63.6
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1377.8 1050 63.7
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1371.7 1053 62.7
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1369.8 1043 62.9
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1364.7 1056 62.5
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1357.8 1044 63.5
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1355.5 1051 62.5
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1355.5 1056 62.0
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1355.1 1051 62.5
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1353.6 1072 62.5
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1350.9 1056 63.0
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1347.0 1051 62.4
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1347.0 1049 61.2
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1346.6 1051 62.2
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1341.3 1052 61.9
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1336.6 1053 62.6
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1336.6 1085 61.3
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1332.0 1013 63.3
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1329.3 1044 61.7
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1322.8 1099 59.4
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1320.8 1049 60.2
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1313.5 1044 60.9
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1308.9 1090 60.6
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1308.1 1076 60.3
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1301.2 1077 59.3
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1297.7 1048 61.7
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1292.7 1050 59.1
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1288.5 1127 56.9
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1267.3 1050 59.0
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1256.5 1044 59.4
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1254.6 1044 59.3
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1253.4 1050 59.1
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1243.0 1032 58.7
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1223.0 1167 55.1
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1213.7 1059 57.8
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1195.6 1048 58.1
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1194.9 849 67.4
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1189.1 1051 57.3
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1176.4 1049 55.4
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1168.7 1130 53.6
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1167.5 1053 55.3
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1125.2 1034 54.7
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 4.5e-304 1048.1 868 59.0
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.3e-298 1030.0 1045 52.1
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 5.3e-289 998.0 1018 49.7
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 2.6e-288 995.7 879 58.1
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 1.7e-287 993.0 895 56.4
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 5.3e-273 944.9 676 66.4
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 1.7e-258 896.7 1058 46.3
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 9.7e-251 870.9 1061 43.7
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 1.9e-246 856.7 537 79.5
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 9.2e-225 784.6 733 54.0
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 2.6e-219 766.5 704 54.5
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 6.8e-212 741.9 381 93.7
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-210 737.6 721 53.1
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 3.3e-206 723.0 696 50.7
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 9.3e-201 704.9 818 47.4
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.3e-197 694.5 510 65.3
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 2.6e-195 686.8 663 52.8
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 3.1e-188 663.3 835 43.2
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 3.4e-187 659.8 507 62.3
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 2.1e-181 640.6 994 37.7
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 2.4e-180 637.1 1049 38.1
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 6.5e-178 629.0 490 63.3
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 7.9e-176 622.1 862 39.4
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 3.4e-171 606.7 595 52.1
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.3e-165 588.2 506 56.7
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 2.5e-161 573.9 438 64.2
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 7.7e-131 472.6 351 64.4
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 3.4e-126 457.2 341 65.1
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 1.0e-119 435.6 451 49.4
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 1.6e-115 421.8 857 32.3
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 1.5e-110 405.2 347 59.9
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 6.8e-95 353.2 1148 27.1
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.1e-89 335.9 258 63.6
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 7.1e-76 290.0 211 65.4
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 1.9e-73 282.0 223 58.7
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.4e-71 275.8 292 51.4
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 1.5e-70 272.3 177 73.4
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 2.9e-69 268.1 497 35.2
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 1.1e-68 266.2 399 41.6
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 7.1e-68 263.5 268 51.9
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 3.5e-67 261.2 242 56.2
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 2.1e-64 251.9 974 26.1
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 6.5e-61 240.4 204 54.4
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 3.0e-58 231.5 327 41.9
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 9.6e-57 226.5 1173 24.3
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 1.5e-54 219.2 127 83.5
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.6e-51 209.1 154 62.3
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 3.0e-50 204.9 211 50.7
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 4.6e-43 181.0 164 60.4
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 3.8e-37 161.4 193 46.6
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 4.7e-35 154.5 328 30.8
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 2.6e-33 148.7 103 66.0
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 6.3e-32 144.1 113 66.4
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 7.7e-30 137.1 103 67.0
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 3.8e-29 134.8 86 73.3
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 1.5e-28 132.9 154 48.7
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 8.0e-27 127.1 156 46.8
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 1.3e-24 119.8 71 71.8
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 1.4e-23 116.3 106 60.4
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 6.1e-19 100.9 85 47.1
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 2.0e-17 95.9 70 65.7
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 1.4e-15 89.7 70 57.1
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.8e-15 89.4 122 40.2
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 9.5e-12 77.0 104 40.4
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 6.1e-11 74.3 45 77.8
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 2.0e-09 69.3 77 48.1
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 2.2e-08 65.9 77 53.2


User provided reference genes

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