Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g12740 Fragaria vesca HOM05D006531 ORTHO05D007905 0.0e+00 1146.0 572 100.0
FAN19G3073 Fragaria x ananassa HOM05D006531 ORTHO05D007905 0.0e+00 1127.9 572 99.0
FAN23G2909 Fragaria x ananassa HOM05D006531 ORTHO05D007905 0.0e+00 1083.9 572 95.3
FAN26G0669 Fragaria x ananassa HOM05D006531 ORTHO05D007905 4.6e-303 1043.9 573 91.8
FAN28G0612 Fragaria x ananassa HOM05D006531 ORTHO05D007905 3.3e-301 1037.7 573 91.3
RcHm_v2.0_Chr2g0100811 Rosa chinensis HOM05D006531 ORTHO05D007905 1.1e-272 943.0 566 85.0
MD15G1254500 Malus domestica HOM05D006531 ORTHO05D007905 5.5e-216 754.6 577 69.3
Prupe.7G159100 Prunus persica HOM05D006531 ORTHO05D007905 4.1e-187 658.7 525 65.7
Haze_03846 Corylus avellana HOM05D006531 ORTHO05D007905 1.3e-159 567.4 575 53.9
CANSAT21G1927 Cannabis sativa HOM05D006531 ORTHO05D007905 3.7e-159 565.8 578 52.6
QL06p035210 Quercus lobata HOM05D006531 ORTHO05D007905 2.7e-154 549.7 599 52.9
TAR628G0973 Trochodendron aralioides HOM05D006531 ORTHO05D007905 1.1e-150 537.7 606 50.3
CsaV3_6G046680 Cucumis sativus L. HOM05D006531 ORTHO05D007905 1.4e-150 537.3 575 50.6
MELO3C007866.2 Cucumis melo HOM05D006531 ORTHO05D007905 1.8e-150 537.0 575 50.3
Dinv05610 Davidia involucrata HOM05D006531 ORTHO05D007905 1.8e-150 537.0 568 52.5
GSVIVG01018883001 Vitis vinifera HOM05D006531 ORTHO05D007905 1.8e-150 537.0 571 51.3
ClCG01G019940 Citrullus lanatus HOM05D006531 ORTHO05D008656 8.4e-148 528.1 608 48.5
Potri.007G019733 Populus trichocarpa HOM05D006531 ORTHO05D007905 3.2e-147 526.2 579 50.4
Potri.007G019800 Populus trichocarpa HOM05D006531 ORTHO05D007905 1.3e-145 520.8 580 49.8
Gohir.D11G188400 Gossypium hirsutum HOM05D006531 ORTHO05D007905 2.4e-142 510.0 569 48.9
Lalb_Chr16g0391021 Lupinus albus HOM05D006531 ORTHO05D007905 6.9e-142 508.4 594 47.8
Actinidia35619 Actinidia chinensis HOM05D006531 ORTHO05D007905 9.0e-142 508.1 589 48.7
Gorai.007G200500 Gossypium raimondii HOM05D006531 ORTHO05D007905 5.9e-141 505.4 565 49.0
Atru.chr3.665 Acer truncatum HOM05D006531 ORTHO05D007905 1.3e-140 504.2 582 49.7
Thecc.01G028000 Theobroma cacao HOM05D006531 ORTHO05D007905 1.3e-140 504.2 570 49.6
TWI53G1729 Tripterygium wilfordii HOM05D006531 ORTHO05D007905 1.4e-139 500.7 573 49.9
COL.COLO4_22012 Corchorus olitorius HOM05D006531 ORTHO05D007905 1.9e-139 500.4 564 51.6
Ciclev10025250m.g Citrus clementina HOM05D006531 ORTHO05D007905 2.5e-139 500.0 587 49.6
Cpa.g.sc89.75 Carica papaya HOM05D006531 ORTHO05D007905 2.1e-138 496.9 583 48.7
Duzib187G1823 Durio zibethinus HOM05D006531 ORTHO05D007905 4.6e-138 495.7 573 49.0
Rhsim08G0121800 Rhododendron simsii HOM05D006531 ORTHO05D007905 4.6e-138 495.7 558 50.7
vmacro17801 Vaccinium macrocarpon HOM05D006531 ORTHO05D007905 1.1e-134 484.6 607 47.1
arahy.Tifrunner.gnm1.ann1.P54VLQ Arachis hypogaea HOM05D006531 ORTHO05D007905 5.3e-134 482.3 581 47.2
arahy.Tifrunner.gnm1.ann1.WDDE23 Arachis hypogaea HOM05D006531 ORTHO05D007905 4.5e-133 479.2 581 47.0
PSO675G3692 Papaver somniferum HOM05D006531 ORTHO05D007905 4.2e-131 472.6 591 46.9
PGR102G2490 Punica granatum HOM05D006531 ORTHO05D007905 4.2e-131 472.6 571 47.3
Glyma.02G053000 Glycine max HOM05D006531 ORTHO05D007905 2.1e-130 470.3 591 45.9
Sabra07G0016900 Salix brachista HOM05D006531 ORTHO05D007905 1.0e-129 468.0 538 49.3
PSO541G5850 Papaver somniferum HOM05D006531 ORTHO05D007905 6.7e-129 465.3 601 46.6
Cc07_g10020 Coffea canephora HOM05D006531 ORTHO05D007905 1.5e-128 464.2 583 47.5
Oeu056763.1 Olea europaea HOM05D006531 ORTHO05D007905 9.7e-128 461.5 579 47.7
VMungo0251G0240 Vigna mungo HOM05D006531 ORTHO05D007905 9.7e-128 461.5 577 44.9
Migut.H02514 Erythranthe guttata HOM05D006531 ORTHO05D007905 1.3e-127 461.1 562 45.4
Atru.BG.101.p Acer truncatum HOM05D006531 ORTHO05D007905 6.3e-127 458.8 560 46.8
Gohir.D11G322533 Gossypium hirsutum HOM05D006531 ORTHO05D007905 6.3e-127 458.8 567 46.6
Ca_22340_v3 Cicer arietinum L. HOM05D006531 ORTHO05D007905 8.2e-127 458.4 576 45.1
Aqoxy6G01185 Aquilegia oxysepala HOM05D006531 ORTHO05D007905 1.1e-126 458.0 613 44.9
Lj4g0004916 Lotus japonicus HOM05D006531 ORTHO05D007905 9.1e-126 454.9 588 46.8
Psat4g096120 Pisum sativum HOM05D006531 ORTHO05D007905 9.1e-126 454.9 580 45.5
DCAR_001553 Daucus carota HOM05D006531 ORTHO05D007905 2.0e-125 453.8 575 45.9
TPR.G21544 Trifolium pratense HOM05D006531 ORTHO05D007905 1.0e-124 451.4 599 44.1
MSTRG.23258 Avicennia marina HOM05D006531 ORTHO05D007905 6.5e-124 448.7 574 45.8
PGSC0003DMG400022568 Solanum tuberosum HOM05D006531 ORTHO05D007905 2.5e-123 446.8 569 44.6
Lsat_1_v5_gn_4_151921 Lactuca sativa HOM05D006531 ORTHO05D007905 4.2e-123 446.0 572 45.5
Medtr8g076860 Medicago truncatula HOM05D006531 ORTHO05D007905 2.1e-122 443.7 579 43.4
EL10As8g23896 Beta vulgaris HOM05D006531 ORTHO05D007905 3.6e-122 443.0 566 43.5
SalBow8G4669 Salvia bowleyana HOM05D006531 ORTHO05D007905 4.7e-122 442.6 576 44.4
Sopen03g006510 Solanum pennellii HOM05D006531 ORTHO05D007905 1.5e-120 437.6 567 43.7
Sc07g0000880 Simmondsia chinensis HOM05D006531 ORTHO05D007905 5.7e-120 435.6 563 45.8
AUR62004101 Chenopodium quinoa HOM05D006531 ORTHO05D007905 2.4e-118 430.3 571 43.4
CARHR147820 Cardamine hirsuta HOM05D006531 ORTHO05D007905 5.3e-118 429.1 573 45.2
AUR62007614 Chenopodium quinoa HOM05D006531 ORTHO05D007905 5.3e-118 429.1 575 42.8
Hund14004 Selenicereus undatus HOM05D006531 ORTHO05D007905 5.3e-118 429.1 572 44.1
Ah.03g141200 Amaranthus hybridus HOM05D006531 ORTHO05D007905 1.6e-117 427.6 568 42.6
THA.LOC104819768 Tarenaya hassleriana HOM05D006531 ORTHO05D007905 2.6e-117 426.8 585 44.8
AT3G26750 Arabidopsis thaliana HOM05D006531 ORTHO05D007905 1.0e-116 424.9 578 44.8
Solyc03g033720.4 Solanum lycopersicum HOM05D006531 ORTHO05D007905 1.7e-116 424.1 567 42.9
AL5G15610 Arabidopsis lyrata HOM05D006531 ORTHO05D007905 3.8e-116 422.9 572 44.6
CAN.G753.1 Capsicum annuum HOM05D006531 ORTHO05D007905 5.0e-116 422.5 567 42.5
ECA232G0312 Erigeron canadensis HOM05D006531 ORTHO05D007905 2.5e-115 420.2 563 44.0
Eucgr.J02379 Eucalyptus grandis HOM05D006531 ORTHO05D007905 3.2e-115 419.9 564 42.0
Sp2g15880 Schrenkiella parvula HOM05D006531 ORTHO05D007905 5.5e-115 419.1 581 44.9
Thhalv10003992m.g Eutrema salsugineum HOM05D006531 ORTHO05D007905 6.8e-113 412.1 579 43.7
Nitab4.5_0011360g0010 Nicotiana tabacum HOM05D006531 ORTHO05D007905 6.8e-113 412.1 576 41.5
HanXRQChr09g0261281 Helianthus annuus HOM05D006531 ORTHO05D007905 9.7e-112 408.3 555 44.9
A06p41760 Brassica napus HOM05D006531 ORTHO05D007905 4.8e-111 406.0 571 43.1
BraA06t27096Z Brassica rapa HOM05D006531 ORTHO05D007905 4.8e-111 406.0 571 43.1
BcaC06g33892 Brassica carinata HOM05D006531 ORTHO05D007905 1.4e-110 404.4 577 43.2
CDE04G2389 Ceratophyllum demersum HOM05D006531 ORTHO05D007905 1.8e-110 404.1 594 40.7
BcaC06g31044 Brassica carinata HOM05D006531 ORTHO05D007905 5.3e-110 402.5 570 43.5
Nitab4.5_0001289g0010 Nicotiana tabacum HOM05D006531 ORTHO05D007905 1.6e-109 401.0 604 40.1
C07p35780 Brassica napus HOM05D006531 ORTHO05D007905 7.7e-109 398.7 570 43.0
Aa31LG2G5790 Aethionema arabicum HOM05D006531 ORTHO05D007905 1.1e-107 394.8 557 43.1
BolC7t44097H Brassica oleracea HOM05D006531 ORTHO05D007905 1.9e-107 394.0 569 43.4
Lj2C458T7 Lonicera japonica HOM05D006531 ORTHO05D007905 5.5e-107 392.5 436 48.9
CiPaw.07G051400 Carya illinoinensis HOM05D006531 ORTHO05D007905 4.7e-106 389.4 416 52.4
Sed0004808 Sechium edule HOM05D006531 ORTHO05D007905 4.5e-101 372.9 403 50.6
Peaxi162Scf00010g00816 Petunia axillaris HOM05D006531 ORTHO05D007905 1.7e-95 354.4 572 39.0
Manes.02G098000 Manihot esculenta HOM05D006531 ORTHO05D007905 3.7e-95 353.2 412 46.8
Os02g0130900 Oryza sativa ssp. japonica HOM05D006531 ORTHO05D007905 7.8e-93 345.5 597 36.7
unitig_0.g471 Utricularia gibba HOM05D006531 ORTHO05D007905 1.9e-91 340.9 563 38.5
ATR0585G072 Amborella trichopoda HOM05D006531 ORTHO05D007905 2.3e-89 334.0 569 36.4
Carub.0005s0479 Capsella rubella HOM05D006531 ORTHO05D007905 4.0e-89 333.2 433 45.5
Gohir.A11G181766 Gossypium hirsutum HOM05D006531 ORTHO05D007905 4.0e-89 333.2 396 46.0
MBI16_g36847_MAGBIO Magnolia biondii HOM05D006531 ORTHO05D007905 1.1e-86 325.1 443 44.5
SGA_v2.0_scaffold12G06335 Striga asiatica HOM05D006531 ORTHO05D007905 1.5e-83 314.7 398 43.7
HPP92_011628 Vanilla planifolia HOM05D006531 ORTHO05D007905 2.8e-82 310.5 533 38.8
Hma1.2p1_3019F.1_g331750 Hydrangea macrophylla HOM05D006531 ORTHO05D007905 2.3e-81 307.4 367 48.2
Phvul.003G257232 Phaseolus vulgaris HOM05D006531 ORTHO05D007905 1.1e-62 245.4 242 48.3
Phvul.003G257166 Phaseolus vulgaris HOM05D006531 ORTHO05D007905 3.2e-62 243.8 231 55.8
MBI14_g29302_MAGBIO Magnolia biondii HOM05D006531 ORTHO05D007905 1.2e-56 225.3 191 56.5
Mapoly0011s0081 Marchantia polymorpha HOM05D006531 ORTHO05D007905 1.7e-55 221.5 617 29.2
Pp3c2_6980 Physcomitrium patens HOM05D006531 ORTHO05D007905 1.9e-54 218.0 600 29.5
Zm00001eb209020 Zea mays HOM05D006531 ORTHO05D007905 4.6e-53 213.4 508 30.7
Nn5g29702 Nelumbo nucifera HOM05D006531 ORTHO05D007905 1.7e-47 194.9 573 27.6
CSS0007477 Camellia sinensis var. sinensis HOM05D006531 ORTHO05D007905 2.4e-41 174.5 134 59.7
AagrBONN_evm.TU.Sc2ySwM_368.1148 Anthoceros agrestis HOM05D006531 ORTHO05D007905 9.0e-41 172.6 457 27.8
TAR376G0004 Trochodendron aralioides HOM05D006531 ORTHO05D007905 1.4e-38 165.2 138 58.7
vmacro23089 Vaccinium macrocarpon HOM05D006531 ORTHO05D007905 9.6e-35 152.5 130 56.9
Zm00001eb231290 Zea mays HOM05D006531 ORTHO05D007905 6.5e-31 139.8 268 34.3
Lj2g0008134 Lotus japonicus HOM05D006531 ORTHO05D007905 1.1e-25 122.5 159 49.7
Carub.0006s2991 Capsella rubella HOM05D006531 ORTHO05D007905 3.1e-25 120.9 101 57.4
SEGI_05601 Sequoiadendron giganteum HOM05D006531 ORTHO05D007905 2.7e-21 107.8 346 28.0
TAR376G0395 Trochodendron aralioides HOM05D006531 ORTHO05D007905 3.6e-21 107.5 150 44.0
RcHm_v2.0_Chr4g0390451 Rosa chinensis HOM05D006531 ORTHO05D007905 1.4e-12 79.0 43 88.4
Sc07g0000850 Simmondsia chinensis HOM05D006531 ORTHO05D007905 3.9e-12 77.4 89 47.2
TAR629G1149 Trochodendron aralioides HOM05D006531 ORTHO05D007905 4.8e-10 70.5 59 55.9
RcHm_v2.0_Chr2g0102391 Rosa chinensis HOM05D006531 ORTHO05D007905 4.1e-09 67.4 52 65.4
CDE06G1394 Ceratophyllum demersum HOM05D006531 ORTHO05D007905 7.0e-09 66.6 86 43.0
CBR_g8866 Chara braunii HOM05D006531 ORTHO05D007905 1.6e-08 65.5 132 30.3


User provided reference genes

Program Settings