Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1401.0 695 100.0
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1364.0 695 96.7
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1334.7 695 96.4
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1303.1 683 95.8
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1298.1 683 95.3
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1257.3 696 87.8
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1247.3 692 87.0
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1227.2 692 85.1
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1218.8 693 84.4
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1217.6 693 84.7
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1216.4 693 84.3
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1213.0 692 84.0
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1212.2 693 84.3
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1212.2 692 85.3
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1211.1 693 83.8
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1207.2 692 83.1
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1207.2 693 83.3
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1206.0 693 84.3
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1205.7 692 82.8
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1195.6 693 83.5
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1195.6 694 83.1
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1194.9 693 83.4
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1192.6 693 83.0
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1192.2 696 82.5
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1191.8 671 84.6
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1191.8 695 83.5
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1191.0 692 83.7
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1190.6 693 83.1
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1189.1 693 82.7
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1188.7 697 82.6
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1188.7 693 82.5
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1187.9 693 81.7
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1187.2 692 82.2
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1187.2 693 82.8
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1186.0 693 82.1
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1185.6 693 83.0
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1184.9 693 82.5
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1182.5 692 81.2
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1181.0 693 81.2
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1180.6 693 81.4
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1179.5 692 81.1
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1177.9 692 81.5
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1177.5 691 81.9
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1177.2 692 80.8
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1174.1 695 81.0
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1174.1 692 81.2
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1173.3 691 81.9
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1169.8 693 81.0
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1169.8 692 80.9
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1169.1 692 80.9
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1167.1 718 79.2
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1166.0 693 82.0
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1164.4 691 81.3
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1163.7 693 80.7
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1162.9 695 80.7
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1162.5 691 81.3
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1162.5 697 80.5
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1160.6 693 81.5
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1159.4 693 80.4
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1159.1 693 80.1
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1159.1 693 81.4
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1153.7 692 80.1
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1153.3 694 79.4
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1146.3 694 80.4
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1143.6 693 80.1
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1143.6 694 80.1
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1143.3 700 79.1
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1142.5 694 79.1
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1134.0 697 78.0
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1133.6 694 78.4
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1130.9 694 77.4
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1129.4 693 76.8
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1127.5 694 78.0
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1125.9 693 76.6
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1125.5 693 77.6
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1122.8 694 76.2
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1122.1 695 77.1
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1120.9 693 76.2
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1119.0 695 76.8
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1117.8 693 78.6
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1112.8 718 76.3
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1112.1 693 75.0
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1110.9 692 78.2
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1106.3 747 74.0
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1099.7 715 75.5
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1099.3 693 77.6
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1099.0 693 74.5
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1097.8 693 77.8
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1093.2 646 80.3
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1092.4 740 74.1
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1090.5 695 76.0
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1082.0 693 75.3
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1078.5 719 71.6
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 4.8e-312 1074.7 610 84.6
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 3.6e-310 1067.8 693 76.6
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.2e-308 1062.8 671 75.9
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 8.3e-307 1056.6 694 75.6
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 5.9e-305 1050.4 693 75.3
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.6e-294 1015.8 700 71.1
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 5.8e-292 1007.3 580 82.8
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 7.1e-290 1000.3 701 70.0
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 2.8e-286 988.4 695 68.8
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 3.3e-271 938.3 637 73.2
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 6.9e-269 930.6 539 82.6
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 1.8e-261 906.0 707 67.0
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 4.0e-253 878.2 580 73.4
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 5.0e-243 844.7 704 60.1
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 3.7e-238 828.6 538 75.1
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 3.6e-225 785.4 389 99.7
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.4e-221 772.7 705 55.9
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.4e-221 772.7 705 55.9
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.5e-220 770.0 707 55.7
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 5.0e-219 765.0 486 78.2
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.2e-218 761.9 706 55.5
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 4.2e-218 761.9 696 54.6
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 1.2e-212 743.8 710 54.6
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 2.2e-158 563.5 721 43.8
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 1.7e-147 527.3 375 70.4
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 1.5e-135 487.6 506 52.6
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 2.8e-105 387.1 762 34.5
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 7.0e-104 382.5 248 73.8
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 2.3e-99 367.5 818 32.3
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.3e-99 367.5 276 66.3
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 5.9e-95 352.8 344 55.8
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 3.6e-76 290.4 247 59.1
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 1.0e-75 288.9 251 62.2
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 2.0e-74 284.6 178 77.0
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 3.3e-69 267.3 184 72.8
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 8.9e-67 259.2 165 72.7
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 5.4e-64 250.0 617 31.8
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 4.7e-60 236.9 235 51.5
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 6.6e-46 189.9 127 68.5
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 4.0e-43 180.6 138 69.6
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 5.2e-43 180.3 96 89.6
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 4.0e-35 154.1 94 77.7
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.7e-33 148.7 232 40.5
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 2.9e-33 147.9 75 92.0
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.1e-32 146.0 76 89.5
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 4.9e-25 120.6 84 66.7
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 5.6e-21 107.1 85 62.4
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 3.9e-14 84.3 87 52.9
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 1.8e-11 75.5 49 71.4
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 6.9e-11 73.6 49 67.3


User provided reference genes

Program Settings