Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g11940 Fragaria vesca HOM05D007514 ORTHO05D009469 1.1e-74 283.5 177 100.0
FAN19G0235 Fragaria x ananassa HOM05D007514 ORTHO05D009469 1.1e-74 283.5 177 100.0
FAN23G2896 Fragaria x ananassa HOM05D007514 ORTHO05D009469 1.4e-69 266.5 177 96.6
FAN26G2491 Fragaria x ananassa HOM05D007514 ORTHO05D009469 2.4e-69 265.8 177 96.6
FAN28G1094 Fragaria x ananassa HOM05D007514 ORTHO05D009469 9.6e-50 200.7 157 71.3
Prupe.7G167500 Prunus persica HOM05D007514 ORTHO05D009469 2.3e-43 179.5 191 56.0
MD02G1133200 Malus domestica HOM05D007514 ORTHO05D009469 3.6e-41 172.2 185 55.1
CiPaw.07G058000 Carya illinoinensis HOM05D007514 ORTHO05D009469 1.5e-31 140.2 184 50.5
Potri.005G115000 Populus trichocarpa HOM05D007514 ORTHO05D009469 9.9e-31 137.5 79 79.7
Haze_03771 Corylus avellana HOM05D007514 ORTHO05D009469 1.7e-30 136.7 182 57.1
Sabra05G0094100 Salix brachista HOM05D007514 ORTHO05D009469 1.7e-30 136.7 79 79.7
COL.COLO4_21918 Corchorus olitorius HOM05D007514 ORTHO05D009469 3.8e-30 135.6 86 76.7
Duzib264G0291 Durio zibethinus HOM05D007514 ORTHO05D009469 4.2e-29 132.1 82 79.3
PGR119G2084 Punica granatum HOM05D007514 ORTHO05D009469 5.4e-29 131.7 174 51.7
CANSAT01G2848 Cannabis sativa HOM05D007514 ORTHO05D009469 9.3e-29 131.0 86 76.7
Hma1.2p1_0743F.1_g211610 Hydrangea macrophylla HOM05D007514 ORTHO05D009469 1.6e-28 130.2 77 79.2
Atru.chr3.793 Acer truncatum HOM05D007514 ORTHO05D009469 2.1e-28 129.8 77 80.5
Gohir.A02G170200 Gossypium hirsutum HOM05D007514 ORTHO05D009469 2.7e-28 129.4 187 43.9
Cfa006967 Carpinus fangiana HOM05D007514 ORTHO05D009469 3.5e-28 129.0 182 59.9
Ca_22373_v3 Cicer arietinum L. HOM05D007514 ORTHO05D009469 4.6e-28 128.6 152 53.3
Ciclev10026620m.g Citrus clementina HOM05D007514 ORTHO05D009469 4.6e-28 128.6 181 47.5
Lalb_Chr05g0229901 Lupinus albus HOM05D007514 ORTHO05D009469 6.0e-28 128.3 75 77.3
Gorai.003G010100 Gossypium raimondii HOM05D007514 ORTHO05D009469 7.9e-28 127.9 188 43.6
TWI09G1362 Tripterygium wilfordii HOM05D007514 ORTHO05D009469 1.0e-27 127.5 186 44.1
arahy.Tifrunner.gnm1.ann1.EYR4CZ Arachis hypogaea HOM05D007514 ORTHO05D009469 3.0e-27 125.9 85 70.6
arahy.Tifrunner.gnm1.ann1.JXSY0Y Arachis hypogaea HOM05D007514 ORTHO05D009469 3.0e-27 125.9 85 70.6
AUR62011597 Chenopodium quinoa HOM05D007514 ORTHO05D009469 3.9e-27 125.6 82 72.0
ClCG01G020240 Citrullus lanatus HOM05D007514 ORTHO05D009469 5.1e-27 125.2 70 77.1
Dinv33625 Davidia involucrata HOM05D007514 ORTHO05D009469 6.7e-27 124.8 78 75.6
Lsat_1_v5_gn_3_74241 Lactuca sativa HOM05D007514 ORTHO05D009469 6.7e-27 124.8 80 72.5
unitig_26.g10012 Utricularia gibba HOM05D007514 ORTHO05D009469 6.7e-27 124.8 81 71.6
A07p02710 Brassica napus HOM05D007514 ORTHO05D009469 8.7e-27 124.4 83 71.1
BraA07t28071Z Brassica rapa HOM05D007514 ORTHO05D009469 8.7e-27 124.4 83 71.1
Gohir.D03G009800 Gossypium hirsutum HOM05D007514 ORTHO05D009469 8.7e-27 124.4 185 41.1
Ah.01g021120 Amaranthus hybridus HOM05D007514 ORTHO05D009469 1.5e-26 123.6 82 70.7
Cpa.g.sc6.242 Carica papaya HOM05D007514 ORTHO05D009469 1.5e-26 123.6 88 67.0
QL06p032616 Quercus lobata HOM05D007514 ORTHO05D009469 1.5e-26 123.6 83 67.5
Sp3g31390 Schrenkiella parvula HOM05D007514 ORTHO05D009469 1.5e-26 123.6 83 69.9
DCAR_016611 Daucus carota HOM05D007514 ORTHO05D009469 1.9e-26 123.2 72 79.2
Lj2P467T19 Lonicera japonica HOM05D007514 ORTHO05D009469 1.9e-26 123.2 73 76.7
Thecc.01G019700 Theobroma cacao HOM05D007514 ORTHO05D009469 1.9e-26 123.2 188 45.2
BcaC06g36349 Brassica carinata HOM05D007514 ORTHO05D009469 2.5e-26 122.9 83 69.9
C07p05010 Brassica napus HOM05D007514 ORTHO05D009469 2.5e-26 122.9 83 69.9
BolC7t40902H Brassica oleracea HOM05D007514 ORTHO05D009469 2.5e-26 122.9 83 69.9
Sed0026037 Sechium edule HOM05D007514 ORTHO05D009469 3.3e-26 122.5 82 70.7
Manes.02G103801 Manihot esculenta HOM05D007514 ORTHO05D009469 4.3e-26 122.1 184 40.2
SGA_v2.0_scaffold234G43648 Striga asiatica HOM05D007514 ORTHO05D009469 5.6e-26 121.7 71 78.9
BcaB03g16581 Brassica carinata HOM05D007514 ORTHO05D009469 9.6e-26 120.9 83 68.7
Cc07_g10640 Coffea canephora HOM05D007514 ORTHO05D009469 9.6e-26 120.9 82 69.5
Lj4g0013490 Lotus japonicus HOM05D007514 ORTHO05D009469 1.3e-25 120.6 76 72.4
Oeu059507.1 Olea europaea HOM05D007514 ORTHO05D009469 1.3e-25 120.6 77 67.5
Sc16g0002120 Simmondsia chinensis HOM05D007514 ORTHO05D009469 1.3e-25 120.6 71 76.1
THA.LOC104819752 Tarenaya hassleriana HOM05D007514 ORTHO05D009469 1.3e-25 120.6 181 43.1
MSTRG.883 Avicennia marina HOM05D007514 ORTHO05D009469 2.1e-25 119.8 145 45.5
TPR.G30050 Trifolium pratense HOM05D007514 ORTHO05D009469 2.1e-25 119.8 71 78.9
Aa31LG8G15140 Aethionema arabicum HOM05D007514 ORTHO05D009469 3.7e-25 119.0 178 44.4
Thhalv10022884m.g Eutrema salsugineum HOM05D007514 ORTHO05D009469 3.7e-25 119.0 83 69.9
CSS0010041 Camellia sinensis var. sinensis HOM05D007514 ORTHO05D009469 4.8e-25 118.6 82 68.3
CSS0030936 Camellia sinensis var. sinensis HOM05D007514 ORTHO05D009469 4.8e-25 118.6 82 68.3
Nn6g32368 Nelumbo nucifera HOM05D007514 ORTHO05D009469 4.8e-25 118.6 187 42.2
Psat4g099040 Pisum sativum HOM05D007514 ORTHO05D009469 4.8e-25 118.6 82 69.5
AL3G51000 Arabidopsis lyrata HOM05D007514 ORTHO05D009469 6.2e-25 118.2 76 72.4
Carub.0003s3210 Capsella rubella HOM05D007514 ORTHO05D009469 6.2e-25 118.2 76 72.4
CARHR108460 Cardamine hirsuta HOM05D007514 ORTHO05D009469 6.2e-25 118.2 71 77.5
MELO3C007896.2 Cucumis melo HOM05D007514 ORTHO05D009469 8.1e-25 117.9 184 50.5
Medtr8g075960 Medicago truncatula HOM05D007514 ORTHO05D009469 1.1e-24 117.5 77 74.0
Peaxi162Scf00083g00065 Petunia axillaris HOM05D007514 ORTHO05D009469 1.1e-24 117.5 71 71.8
EL10Ac9g21968 Beta vulgaris HOM05D007514 ORTHO05D009469 1.4e-24 117.1 71 71.8
AT2G17972 Arabidopsis thaliana HOM05D007514 ORTHO05D009469 1.8e-24 116.7 76 71.1
CsaV3_6G047030 Cucumis sativus L. HOM05D007514 ORTHO05D009469 1.8e-24 116.7 182 50.0
Migut.L00252 Erythranthe guttata HOM05D007514 ORTHO05D009469 1.8e-24 116.7 82 65.9
Migut.L00394 Erythranthe guttata HOM05D007514 ORTHO05D009469 1.8e-24 116.7 82 65.9
Nitab4.5_0006286g0070 Nicotiana tabacum HOM05D007514 ORTHO05D009469 2.4e-24 116.3 72 75.0
Zm00001eb228020 Zea mays HOM05D007514 ORTHO05D009469 2.4e-24 116.3 77 68.8
Rhsim08G0034000 Rhododendron simsii HOM05D007514 ORTHO05D009469 3.1e-24 115.9 71 71.8
Nitab4.5_0001959g0010 Nicotiana tabacum HOM05D007514 ORTHO05D009469 4.0e-24 115.5 72 75.0
VMungo0251G0111 Vigna mungo HOM05D007514 ORTHO05D009469 4.0e-24 115.5 69 73.9
MBI05_g15346_MAGBIO Magnolia biondii HOM05D007514 ORTHO05D009469 5.3e-24 115.2 70 70.0
Aqoxy5G01772 Aquilegia oxysepala HOM05D007514 ORTHO05D009469 6.9e-24 114.8 69 73.9
Glyma.16G128900 Glycine max HOM05D007514 ORTHO05D009469 2.6e-23 112.8 69 73.9
Os06g0715200 Oryza sativa ssp. japonica HOM05D007514 ORTHO05D009469 3.4e-23 112.5 70 70.0
Glyma.02G048800 Glycine max HOM05D007514 ORTHO05D009469 4.5e-23 112.1 69 73.9
Phvul.003G262200 Phaseolus vulgaris HOM05D007514 ORTHO05D009469 5.8e-23 111.7 69 71.0
Sopen02g028770 Solanum pennellii HOM05D007514 ORTHO05D009469 1.0e-22 110.9 72 69.4
PGSC0003DMG401003636 Solanum tuberosum HOM05D007514 ORTHO05D009469 1.0e-22 110.9 72 69.4
arahy.Tifrunner.gnm1.ann1.KXHU4R Arachis hypogaea HOM05D007514 ORTHO05D009469 2.2e-22 109.8 78 69.2
HPP92_025365 Vanilla planifolia HOM05D007514 ORTHO05D009469 2.2e-22 109.8 72 68.1
PSO541G1849 Papaver somniferum HOM05D007514 ORTHO05D009469 5.5e-21 105.1 67 70.1
PSO675G8043 Papaver somniferum HOM05D007514 ORTHO05D009469 5.5e-21 105.1 67 70.1
TAR365G0263 Trochodendron aralioides HOM05D007514 ORTHO05D009469 5.5e-21 105.1 167 42.5
TAR365G1204 Trochodendron aralioides HOM05D007514 ORTHO05D009469 2.7e-20 102.8 167 41.9
Duzib147G0981 Durio zibethinus HOM05D007514 ORTHO05D009469 1.8e-19 100.1 75 65.3
SMO353G0320 Selaginella moellendorffii HOM05D007514 ORTHO05D009469 1.8e-19 100.1 70 61.4
Mapoly0011s0103 Marchantia polymorpha HOM05D007514 ORTHO05D009469 2.5e-18 96.3 73 61.6
Pp3c15_14110 Physcomitrium patens HOM05D007514 ORTHO05D009469 2.5e-18 96.3 74 58.1
AagrBONN_evm.TU.Sc2ySwM_344.4071 Anthoceros agrestis HOM05D007514 ORTHO05D009469 7.4e-18 94.7 71 60.6
CAN.G66.6 Capsicum annuum HOM05D007514 ORTHO05D009469 2.4e-16 89.7 70 62.9
SEGI_16775 Sequoiadendron giganteum HOM05D007514 ORTHO05D009469 5.3e-16 88.6 59 64.4
Cre05.g245102 Chlamydomonas reinhardtii HOM05D007514 ORTHO05D009469 3.8e-14 82.4 57 61.4
MCO09G231 Micromonas commoda HOM05D007514 ORTHO05D009469 2.6e-07 59.7 57 43.9


User provided reference genes

Program Settings