Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g11080 Fragaria vesca HOM05D003374 ORTHO05D009470 3.4e-84 315.1 171 100.0
FAN19G0939 Fragaria x ananassa HOM05D003374 ORTHO05D009470 2.9e-80 302.0 184 92.4
FAN23G1041 Fragaria x ananassa HOM05D003374 ORTHO05D009470 3.8e-80 301.6 171 95.9
FAN26G1101 Fragaria x ananassa HOM05D003374 ORTHO05D009470 3.0e-77 292.0 171 94.2
FAN28G2426 Fragaria x ananassa HOM05D003374 ORTHO05D009470 8.9e-77 290.4 171 93.0
RcHm_v2.0_Chr2g0098351 Rosa chinensis HOM05D003374 ORTHO05D009470 5.0e-72 274.6 172 88.4
MD15G1237400 Malus domestica HOM05D003374 ORTHO05D009470 5.8e-52 208.0 139 77.7
Prupe.7G175000 Prunus persica HOM05D003374 ORTHO05D009470 8.3e-51 204.1 144 73.6
Cfa007029 Carpinus fangiana HOM05D003374 ORTHO05D009470 1.1e-47 193.7 143 67.1
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 7.3e-47 191.0 143 67.1
QL06p052079 Quercus lobata HOM05D003374 ORTHO05D009470 9.6e-47 190.7 138 69.6
Thecc.01G011500 Theobroma cacao HOM05D003374 ORTHO05D009470 1.1e-45 187.2 175 64.0
CiPaw.08G125800 Carya illinoinensis HOM05D003374 ORTHO05D009470 3.1e-45 185.7 144 66.7
Manes.02G110400 Manihot esculenta HOM05D003374 ORTHO05D009470 1.5e-44 183.3 139 65.5
Duzib145G0002 Durio zibethinus HOM05D003374 ORTHO05D009470 4.2e-42 175.3 142 64.1
Atru.chr3.907 Acer truncatum HOM05D003374 ORTHO05D009470 9.3e-42 174.1 138 64.5
Gohir.A02G174300 Gossypium hirsutum HOM05D003374 ORTHO05D009470 3.5e-41 172.2 138 63.8
TWI73G0454 Tripterygium wilfordii HOM05D003374 ORTHO05D009470 6.0e-41 171.4 141 62.4
Cpa.g.sc6.313 Carica papaya HOM05D003374 ORTHO05D009470 2.3e-40 169.5 172 54.7
Potri.005G107800 Populus trichocarpa HOM05D003374 ORTHO05D009470 3.9e-40 168.7 172 58.7
Gohir.D03G005500 Gossypium hirsutum HOM05D003374 ORTHO05D009470 1.1e-39 167.2 142 62.7
Gorai.003G005900 Gossypium raimondii HOM05D003374 ORTHO05D009470 1.1e-39 167.2 142 62.7
Sabra05G0088300 Salix brachista HOM05D003374 ORTHO05D009470 1.9e-39 166.4 142 62.7
Ciclev10026638m.g Citrus clementina HOM05D003374 ORTHO05D009470 2.5e-39 166.0 140 60.7
CANSAT01G1253 Cannabis sativa HOM05D003374 ORTHO05D009470 4.8e-38 161.8 172 62.2
Ca_24942_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009470 8.1e-38 161.0 147 57.1
Eucgr.I02305 Eucalyptus grandis HOM05D003374 ORTHO05D009470 1.1e-37 160.6 147 60.5
Phvul.002G104800 Phaseolus vulgaris HOM05D003374 ORTHO05D009470 1.8e-37 159.8 142 56.3
PGR102G2171 Punica granatum HOM05D003374 ORTHO05D009470 9.0e-37 157.5 143 58.0
Hma1.2p1_0315F.1_g122600 Hydrangea macrophylla HOM05D003374 ORTHO05D009470 5.8e-36 154.8 139 58.3
Medtr5g022970 Medicago truncatula HOM05D003374 ORTHO05D009470 7.6e-36 154.5 147 57.1
Glyma.11G080800 Glycine max HOM05D003374 ORTHO05D009470 3.8e-35 152.1 148 52.0
Lj2g0014457 Lotus japonicus HOM05D003374 ORTHO05D009470 8.4e-35 151.0 139 56.1
Lalb_Chr09g0321441 Lupinus albus HOM05D003374 ORTHO05D009470 3.2e-34 149.1 146 55.5
Rhsim10G0205800 Rhododendron simsii HOM05D003374 ORTHO05D009470 1.6e-33 146.7 148 55.4
Dinv08548 Davidia involucrata HOM05D003374 ORTHO05D009470 3.5e-33 145.6 136 58.8
vmacro20496 Vaccinium macrocarpon HOM05D003374 ORTHO05D009470 3.5e-33 145.6 146 55.5
Lalb_Chr05g0212181 Lupinus albus HOM05D003374 ORTHO05D009470 4.6e-33 145.2 137 58.4
VMungo1215G1047 Vigna mungo HOM05D003374 ORTHO05D009470 1.5e-31 140.2 139 54.7
Cc07_g11310 Coffea canephora HOM05D003374 ORTHO05D009470 1.9e-31 139.8 138 56.5
Cc08_g04880 Coffea canephora HOM05D003374 ORTHO05D009470 1.9e-31 139.8 138 56.5
Glyma.01G162500 Glycine max HOM05D003374 ORTHO05D009470 1.9e-31 139.8 147 49.0
CDE05G2149 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 7.3e-31 137.9 130 56.9
TAR625G1139 Trochodendron aralioides HOM05D003374 ORTHO05D009470 9.6e-31 137.5 137 54.7
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 8.1e-30 134.4 180 52.8
CARHR108000 Cardamine hirsuta HOM05D003374 ORTHO05D009470 8.1e-30 134.4 140 54.3
Thhalv10022897m.g Eutrema salsugineum HOM05D003374 ORTHO05D009470 1.1e-29 134.0 165 46.7
THA.LOC104819731 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 1.1e-29 134.0 134 55.2
CDE05G3297 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 1.4e-29 133.7 130 55.4
PSO541G4788 Papaver somniferum HOM05D003374 ORTHO05D009470 2.4e-29 132.9 134 56.0
PSO675G4674 Papaver somniferum HOM05D003374 ORTHO05D009470 2.4e-29 132.9 134 57.5
GSVIVG01005193001 Vitis vinifera HOM05D003374 ORTHO05D009470 2.4e-29 132.9 112 60.7
Sp3g31120 Schrenkiella parvula HOM05D003374 ORTHO05D009470 3.1e-29 132.5 165 50.9
C07p05580 Brassica napus HOM05D003374 ORTHO05D009470 5.3e-29 131.7 140 52.1
MBI09_g46000_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009470 1.2e-28 130.6 166 51.2
AT2G17710 Arabidopsis thaliana HOM05D003374 ORTHO05D009470 2.6e-28 129.4 130 54.6
BcaC06g36303 Brassica carinata HOM05D003374 ORTHO05D009470 2.6e-28 129.4 140 52.1
AL3G50710 Arabidopsis lyrata HOM05D003374 ORTHO05D009470 4.5e-28 128.6 140 52.1
BraA07t28128Z Brassica rapa HOM05D003374 ORTHO05D009470 4.5e-28 128.6 174 49.4
BcaB03g16544 Brassica carinata HOM05D003374 ORTHO05D009470 5.8e-28 128.3 140 51.4
Carub.0003s3182 Capsella rubella HOM05D003374 ORTHO05D009470 5.8e-28 128.3 140 52.1
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 1.7e-27 126.7 142 51.4
Aa31LG8G14990 Aethionema arabicum HOM05D003374 ORTHO05D009470 2.2e-27 126.3 138 52.9
BcaC01g02894 Brassica carinata HOM05D003374 ORTHO05D009470 2.9e-27 125.9 165 49.7
C03p58640 Brassica napus HOM05D003374 ORTHO05D009470 2.9e-27 125.9 165 49.7
BolC3t18125H Brassica oleracea HOM05D003374 ORTHO05D009470 2.9e-27 125.9 165 49.7
Nitab4.5_0002105g0080 Nicotiana tabacum HOM05D003374 ORTHO05D009470 2.9e-27 125.9 139 51.8
BcaB08g34755 Brassica carinata HOM05D003374 ORTHO05D009470 6.4e-27 124.8 165 49.7
Nitab4.5_0006892g0010 Nicotiana tabacum HOM05D003374 ORTHO05D009470 6.4e-27 124.8 141 50.4
Duzib147G0965 Durio zibethinus HOM05D003374 ORTHO05D009470 1.1e-26 124.0 114 58.8
A06p33690 Brassica napus HOM05D003374 ORTHO05D009470 1.4e-26 123.6 165 49.1
BraA06t26303Z Brassica rapa HOM05D003374 ORTHO05D009470 1.4e-26 123.6 165 49.1
THA.LOC104804280 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 5.4e-26 121.7 147 49.0
PGSC0003DMG400003663 Solanum tuberosum HOM05D003374 ORTHO05D009470 2.1e-25 119.8 173 49.1
MSTRG.22233 Avicennia marina HOM05D003374 ORTHO05D009470 2.7e-25 119.4 118 51.7
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 2.7e-25 119.4 131 54.2
Sopen02g028160 Solanum pennellii HOM05D003374 ORTHO05D009470 4.6e-25 118.6 171 48.5
CAN.G890.28 Capsicum annuum HOM05D003374 ORTHO05D009470 6.0e-25 118.2 167 48.5
Potri.005G107900 Populus trichocarpa HOM05D003374 ORTHO05D009470 2.3e-24 116.3 112 57.1
EL10Ac9g21336 Beta vulgaris HOM05D003374 ORTHO05D009470 3.0e-24 115.9 123 52.8
Migut.N02761 Erythranthe guttata HOM05D003374 ORTHO05D009470 1.6e-22 110.2 128 49.2
AUR62012999 Chenopodium quinoa HOM05D003374 ORTHO05D009470 4.8e-22 108.6 103 59.2
Actinidia22937 Actinidia chinensis HOM05D003374 ORTHO05D009470 1.8e-21 106.7 104 59.6
MSTRG.24362 Avicennia marina HOM05D003374 ORTHO05D009470 2.4e-21 106.3 123 43.1
Aqoxy6G01986 Aquilegia oxysepala HOM05D003374 ORTHO05D009470 6.9e-21 104.8 97 55.7
Oeu022073.1 Olea europaea HOM05D003374 ORTHO05D009470 1.2e-20 104.0 131 49.6
SalBow6G5967 Salvia bowleyana HOM05D003374 ORTHO05D009470 2.2e-19 99.8 94 55.3
arahy.Tifrunner.gnm1.ann1.HG61QK Arachis hypogaea HOM05D003374 ORTHO05D009470 8.4e-19 97.8 97 52.6
arahy.Tifrunner.gnm1.ann1.YP763J Arachis hypogaea HOM05D003374 ORTHO05D009470 8.4e-19 97.8 97 52.6
COL.COLO4_22495 Corchorus olitorius HOM05D003374 ORTHO05D009470 2.5e-18 96.3 93 63.4
SalBow8G5385 Salvia bowleyana HOM05D003374 ORTHO05D009470 3.2e-18 95.9 94 54.3
TPR.G20269 Trifolium pratense HOM05D003374 ORTHO05D009470 7.1e-18 94.7 64 67.2
Sc18g0006270 Simmondsia chinensis HOM05D003374 ORTHO05D009470 1.3e-16 90.5 89 56.2
unitig_578.g16135 Utricularia gibba HOM05D003374 ORTHO05D009470 3.3e-15 85.9 94 46.8
Hund00012 Selenicereus undatus HOM05D003374 ORTHO05D009470 6.2e-14 81.6 107 48.6
Actinidia17405 Actinidia chinensis HOM05D000373 ORTHO05D001763 5.3e-13 78.6 60 68.3
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 1.2e-12 77.4 91 49.5
TPR.G25136 Trifolium pratense HOM05D000373 ORTHO05D001763 2.0e-12 76.6 122 42.6
ATR0346G001 Amborella trichopoda HOM05D003374 ORTHO05D009470 5.8e-12 75.1 76 52.6
Solyc02g083380.3 Solanum lycopersicum HOM05D003374 ORTHO05D009470 2.5e-10 69.7 63 57.1
Ah.01g008140 Amaranthus hybridus HOM05D003374 ORTHO05D009470 9.3e-10 67.8 88 51.1
Duzib145G0007 Durio zibethinus HOM05D003374 ORTHO05D009470 2.7e-09 66.2 61 55.7
AUR62010008 Chenopodium quinoa HOM05D003374 ORTHO05D010386 7.4e-07 58.2 65 52.3
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 4.8e-06 55.5 123 31.7


User provided reference genes

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