Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g11071 Fragaria vesca HOM05D003374 ORTHO05D009415 4.2e-74 281.2 133 100.0
RcHm_v2.0_Chr2g0098341 Rosa chinensis HOM05D003374 ORTHO05D009415 6.9e-69 263.8 133 93.2
MD02G1123500 Malus domestica HOM05D003374 ORTHO05D009415 8.5e-59 230.3 130 82.3
Prupe.7G175100 Prunus persica HOM05D003374 ORTHO05D009415 7.9e-57 223.8 129 79.8
Cpa.g.sc6.314 Carica papaya HOM05D003374 ORTHO05D009415 8.2e-54 213.8 127 77.2
DCAR_014045 Daucus carota HOM05D003374 ORTHO05D009415 8.2e-54 213.8 128 76.6
Eucgr.J02491 Eucalyptus grandis HOM05D003374 ORTHO05D009415 1.8e-53 212.6 128 76.6
Manes.01G150900 Manihot esculenta HOM05D003374 ORTHO05D009415 4.1e-53 211.5 126 77.8
TWI73G0214 Tripterygium wilfordii HOM05D003374 ORTHO05D009415 4.1e-53 211.5 128 75.0
CsaV3_3G000500 Cucumis sativus L. HOM05D003374 ORTHO05D009415 5.3e-53 211.1 126 74.6
Lsat_1_v5_gn_2_75400 Lactuca sativa HOM05D003374 ORTHO05D009415 1.2e-52 209.9 126 74.6
Atru.chr3.908 Acer truncatum HOM05D003374 ORTHO05D009415 1.5e-52 209.5 126 73.8
Migut.C00507 Erythranthe guttata HOM05D003374 ORTHO05D009415 2.6e-52 208.8 125 75.2
THA.LOC104807515 Tarenaya hassleriana HOM05D003374 ORTHO05D009415 4.5e-52 208.0 127 74.0
Thecc.01G011400 Theobroma cacao HOM05D003374 ORTHO05D009415 5.9e-52 207.6 126 73.8
CiPaw.13G118300 Carya illinoinensis HOM05D003374 ORTHO05D009415 7.7e-52 207.2 126 72.2
Medtr5g022990 Medicago truncatula HOM05D003374 ORTHO05D009415 1.3e-51 206.5 126 73.8
Sabra05G0088200 Salix brachista HOM05D003374 ORTHO05D009415 1.3e-51 206.5 126 74.6
COL.COLO4_22496 Corchorus olitorius HOM05D003374 ORTHO05D009415 2.9e-51 205.3 125 73.6
SGA_v2.0_scaffold16G07586 Striga asiatica HOM05D003374 ORTHO05D009415 5.0e-51 204.5 126 73.0
CiPaw.08G125700 Carya illinoinensis HOM05D003374 ORTHO05D009415 6.5e-51 204.1 126 71.4
Lj2g0014685 Lotus japonicus HOM05D003374 ORTHO05D009415 1.1e-50 203.4 127 72.4
Oeu022072.1 Olea europaea HOM05D003374 ORTHO05D009415 1.1e-50 203.4 126 71.4
Ca_24943_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009415 1.4e-50 203.0 123 71.5
Potri.005G107700 Populus trichocarpa HOM05D003374 ORTHO05D009415 1.4e-50 203.0 126 73.8
QL06p052083 Quercus lobata HOM05D003374 ORTHO05D009415 1.4e-50 203.0 123 74.8
Nn6g31909 Nelumbo nucifera HOM05D003374 ORTHO05D009415 2.5e-50 202.2 125 72.0
SalBow7G1184 Salvia bowleyana HOM05D003374 ORTHO05D009415 4.2e-50 201.4 126 73.0
GSVIVG01005194001 Vitis vinifera HOM05D003374 ORTHO05D009415 4.2e-50 201.4 123 73.2
MD15G1237300 Malus domestica HOM05D003374 ORTHO05D009415 7.2e-50 200.7 148 66.9
AL3G50700 Arabidopsis lyrata HOM05D003374 ORTHO05D009415 9.4e-50 200.3 125 71.2
Thhalv10023081m.g Eutrema salsugineum HOM05D003374 ORTHO05D009415 9.4e-50 200.3 125 71.2
Oeu050858.1 Olea europaea HOM05D003374 ORTHO05D009415 1.2e-49 199.9 126 69.8
AT2G17705 Arabidopsis thaliana HOM05D003374 ORTHO05D009415 1.6e-49 199.5 127 70.1
CARHR107990 Cardamine hirsuta HOM05D003374 ORTHO05D009415 1.6e-49 199.5 125 69.6
Duzib147G1310 Durio zibethinus HOM05D003374 ORTHO05D009415 2.1e-49 199.1 126 70.6
Rhsim10G0205600 Rhododendron simsii HOM05D003374 ORTHO05D009415 2.1e-49 199.1 126 71.4
Cfa007030 Carpinus fangiana HOM05D003374 ORTHO05D009415 2.7e-49 198.7 124 71.8
Duzib147G0846 Durio zibethinus HOM05D003374 ORTHO05D009415 3.6e-49 198.4 126 70.6
TPR.G25106 Trifolium pratense HOM05D003374 ORTHO05D009415 3.6e-49 198.4 123 71.5
HPP92_015019 Vanilla planifolia HOM05D003374 ORTHO05D009415 3.6e-49 198.4 123 70.7
HPP92_028513 Vanilla planifolia HOM05D003374 ORTHO05D009415 3.6e-49 198.4 123 70.7
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 4.7e-49 198.0 125 70.4
Glyma.11G081000 Glycine max HOM05D003374 ORTHO05D009415 6.1e-49 197.6 123 71.5
Gorai.003G005800 Gossypium raimondii HOM05D003374 ORTHO05D009415 6.1e-49 197.6 126 69.0
TAR625G1333 Trochodendron aralioides HOM05D003374 ORTHO05D009415 6.1e-49 197.6 122 73.8
BcaC06g36302 Brassica carinata HOM05D003374 ORTHO05D009415 1.0e-48 196.8 125 68.8
Gohir.A02G174400 Gossypium hirsutum HOM05D003374 ORTHO05D009415 1.0e-48 196.8 126 69.8
C07p05590 Brassica napus HOM05D003374 ORTHO05D009415 1.4e-48 196.4 125 68.8
Sp3g31110 Schrenkiella parvula HOM05D003374 ORTHO05D009415 1.4e-48 196.4 125 69.6
Phvul.002G104600 Phaseolus vulgaris HOM05D003374 ORTHO05D009415 1.8e-48 196.1 123 70.7
BraA07t28129Z Brassica rapa HOM05D003374 ORTHO05D009415 2.3e-48 195.7 125 69.6
CSS0011665 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 2.3e-48 195.7 126 69.8
Gohir.D03G005400 Gossypium hirsutum HOM05D003374 ORTHO05D009415 3.0e-48 195.3 126 68.3
Solyc02g083360.1 Solanum lycopersicum HOM05D003374 ORTHO05D009415 3.0e-48 195.3 126 68.3
Sopen02g028140 Solanum pennellii HOM05D003374 ORTHO05D009415 3.0e-48 195.3 126 68.3
BcaB03g16543 Brassica carinata HOM05D003374 ORTHO05D009415 5.1e-48 194.5 124 67.7
Carub.0003s3181 Capsella rubella HOM05D003374 ORTHO05D009415 5.1e-48 194.5 125 68.8
PGSC0003DMG400003664 Solanum tuberosum HOM05D003374 ORTHO05D009415 5.1e-48 194.5 126 68.3
CANSAT25G2243 Cannabis sativa HOM05D003374 ORTHO05D009415 6.7e-48 194.1 126 68.3
Ciclev10026501m.g Citrus clementina HOM05D003374 ORTHO05D009415 8.8e-48 193.7 126 69.0
Cc07_g11320 Coffea canephora HOM05D003374 ORTHO05D009415 8.8e-48 193.7 126 69.8
Cc08_g04870 Coffea canephora HOM05D003374 ORTHO05D009415 8.8e-48 193.7 126 69.8
Sc16g0001810 Simmondsia chinensis HOM05D003374 ORTHO05D009415 8.8e-48 193.7 126 66.7
TAR376G1073 Trochodendron aralioides HOM05D003374 ORTHO05D009415 8.8e-48 193.7 126 69.0
Psat2g152000 Pisum sativum HOM05D003374 ORTHO05D009415 1.1e-47 193.4 123 67.5
CSS0020449 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 2.0e-47 192.6 126 69.0
CAN.G890.27 Capsicum annuum HOM05D003374 ORTHO05D009415 2.6e-47 192.2 126 67.5
HanXRQChr14g0442031 Helianthus annuus HOM05D003374 ORTHO05D009415 4.4e-47 191.4 117 72.6
ATR0661G346 Amborella trichopoda HOM05D003374 ORTHO05D009415 9.7e-47 190.3 127 68.5
Ah.03g134290 Amaranthus hybridus HOM05D003374 ORTHO05D009415 1.3e-46 189.9 126 67.5
Lalb_Chr05g0212171 Lupinus albus HOM05D003374 ORTHO05D009415 2.2e-46 189.1 123 67.5
Zm00001eb002870 Zea mays HOM05D003374 ORTHO05D009415 2.2e-46 189.1 130 67.7
Os03g0136500 Oryza sativa ssp. japonica HOM05D003374 ORTHO05D009415 4.8e-46 188.0 130 65.4
Dinv40145 Davidia involucrata HOM05D003374 ORTHO05D009415 1.4e-45 186.4 112 74.1
Aqoxy6G01987 Aquilegia oxysepala HOM05D003374 ORTHO05D009415 9.1e-45 183.7 126 65.1
MSTRG.25049 Avicennia marina HOM05D003374 ORTHO05D009415 1.3e-43 179.9 107 72.0
Aa31LG8G14980 Aethionema arabicum HOM05D003374 ORTHO05D009415 2.2e-43 179.1 107 72.0
unitig_26.g9807 Utricularia gibba HOM05D003374 ORTHO05D009415 2.9e-43 178.7 119 68.1
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 6.5e-43 177.6 110 69.1
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 1.1e-42 176.8 111 69.4
PSO541G5712 Papaver somniferum HOM05D003374 ORTHO05D009415 2.5e-42 175.6 126 62.7
MBI05_g46750_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009415 9.4e-42 173.7 108 70.4
Actinidia22936 Actinidia chinensis HOM05D003374 ORTHO05D009415 1.2e-41 173.3 104 71.2
Nitab4.5_0002105g0060 Nicotiana tabacum HOM05D003374 ORTHO05D009415 1.2e-41 173.3 104 71.2
SEGI_17874 Sequoiadendron giganteum HOM05D003374 ORTHO05D009415 4.7e-41 171.4 121 63.6
PSO675G5709 Papaver somniferum HOM05D003374 ORTHO05D009415 8.0e-41 170.6 126 61.9
Nitab4.5_0006892g0030 Nicotiana tabacum HOM05D003374 ORTHO05D009415 1.0e-40 170.2 104 71.2
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 3.3e-39 165.2 103 68.9
AagrBONN_evm.TU.Sc2ySwM_362.2709 Anthoceros agrestis HOM05D003374 ORTHO05D009415 4.4e-39 164.9 116 61.2
MELO3C013742.2 Cucumis melo HOM05D003374 ORTHO05D009415 1.7e-38 162.9 98 69.4
Sed0013270 Sechium edule HOM05D003374 ORTHO05D009415 1.8e-37 159.5 98 69.4
AagrBONN_evm.TU.Sc2ySwM_362.2707 Anthoceros agrestis HOM05D003374 ORTHO05D009415 4.1e-37 158.3 125 57.6
SMO013G0010 Selaginella moellendorffii HOM05D003374 ORTHO05D009415 2.9e-35 152.1 118 58.5
Sc16g0001870 Simmondsia chinensis HOM05D003374 ORTHO05D009415 3.6e-33 145.2 91 69.2
Pp3c1_28090 Physcomitrium patens HOM05D003374 ORTHO05D009415 3.7e-30 135.2 121 50.4
Pp3c17_11570 Physcomitrium patens HOM05D003374 ORTHO05D009415 4.8e-30 134.8 121 48.8
Pp3c2_13370 Physcomitrium patens HOM05D003374 ORTHO05D009415 4.1e-29 131.7 121 49.6
Glyma.01G162300 Glycine max HOM05D003374 ORTHO05D009415 1.6e-28 129.8 75 73.3
Mapoly0037s0042 Marchantia polymorpha HOM05D003374 ORTHO05D009415 2.2e-27 125.9 123 47.2
CBR_g80133 Chara braunii HOM05D003374 ORTHO05D009415 7.0e-21 104.4 108 42.6
Actinidia17404 Actinidia chinensis HOM05D003374 ORTHO05D009415 1.4e-13 80.1 100 41.0
Nn5g28288 Nelumbo nucifera HOM05D003340 ORTHO05D003775 5.6e-10 68.2 128 31.2
Nn1g08798 Nelumbo nucifera HOM05D003340 ORTHO05D003775 1.2e-09 67.0 128 28.9
AagrBONN_evm.TU.Sc2ySwM_362.2682 Anthoceros agrestis HOM05D003340 ORTHO05D003775 2.1e-09 66.2 86 32.6
Solyc04g071630.3 Solanum lycopersicum HOM05D003340 ORTHO05D003775 2.1e-09 66.2 126 31.0
Sopen04g027620 Solanum pennellii HOM05D003340 ORTHO05D003775 2.1e-09 66.2 126 31.0
Sabra05G0057400 Salix brachista HOM05D003340 ORTHO05D003775 2.8e-09 65.9 127 31.5
Potri.005G070600 Populus trichocarpa HOM05D003340 ORTHO05D003775 3.6e-09 65.5 127 31.5
Nitab4.5_0001344g0050 Nicotiana tabacum HOM05D003340 ORTHO05D003775 4.7e-09 65.1 126 31.0
Nitab4.5_0001187g0040 Nicotiana tabacum HOM05D003340 ORTHO05D003775 8.0e-09 64.3 126 31.0
Aqoxy6G00217 Aquilegia oxysepala HOM05D003340 ORTHO05D003775 1.4e-08 63.5 136 29.4
SGA_v2.0_scaffold52G18966 Striga asiatica HOM05D003340 ORTHO05D003775 1.8e-08 63.2 128 31.2
Zm00001eb289950 Zea mays HOM05D003340 ORTHO05D003775 2.3e-08 62.8 135 32.6
CAN.G264.5 Capsicum annuum HOM05D003340 ORTHO05D003775 3.1e-08 62.4 124 30.6
AUR62019080 Chenopodium quinoa HOM05D003340 ORTHO05D003775 3.1e-08 62.4 129 33.3
AUR62014338 Chenopodium quinoa HOM05D003340 ORTHO05D003775 4.0e-08 62.0 129 33.3
Gohir.A06G044800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 5.2e-08 61.6 134 30.6
Manes.02G163400 Manihot esculenta HOM05D003340 ORTHO05D003775 5.2e-08 61.6 136 30.1
Oeu017298.1 Olea europaea HOM05D003340 ORTHO05D003775 5.2e-08 61.6 127 26.8
Eucgr.F04352 Eucalyptus grandis HOM05D003340 ORTHO05D003775 6.8e-08 61.2 125 30.4
SMO119G0032 Selaginella moellendorffii HOM05D003340 ORTHO05D003775 6.8e-08 61.2 84 34.5
Gohir.A01G189000 Gossypium hirsutum HOM05D003340 ORTHO05D003775 8.9e-08 60.8 126 29.4
Psat6g041160 Pisum sativum HOM05D003340 ORTHO05D003775 8.9e-08 60.8 138 29.0
PGSC0003DMG400006659 Solanum tuberosum HOM05D003340 ORTHO05D003775 8.9e-08 60.8 124 29.8
Thecc.08G125400 Theobroma cacao HOM05D003340 ORTHO05D003775 8.9e-08 60.8 136 28.7
Gohir.D06G045300 Gossypium hirsutum HOM05D003340 ORTHO05D003775 1.5e-07 60.1 134 30.6
Gorai.010G050300 Gossypium raimondii HOM05D003340 ORTHO05D003775 1.5e-07 60.1 134 30.6
AUR62006909 Chenopodium quinoa HOM05D003340 ORTHO05D003775 2.0e-07 59.7 93 35.5
Gohir.A05G268800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 2.6e-07 59.3 97 33.0
Manes.13G057400 Manihot esculenta HOM05D003340 ORTHO05D003775 2.6e-07 59.3 125 29.6
PSO170G4666 Papaver somniferum HOM05D003340 ORTHO05D003775 2.6e-07 59.3 126 30.2
Hund26810 Selenicereus undatus HOM05D003340 ORTHO05D003775 2.6e-07 59.3 89 36.0
HPP92_018105 Vanilla planifolia HOM05D003340 ORTHO05D003775 2.6e-07 59.3 123 27.6
CSS0003781 Camellia sinensis var. sinensis HOM05D003340 ORTHO05D003775 3.4e-07 58.9 123 29.3
CSS0046765 Camellia sinensis var. sinensis HOM05D003340 ORTHO05D003775 3.4e-07 58.9 123 29.3
Duzib093G0952 Durio zibethinus HOM05D003340 ORTHO05D003775 3.4e-07 58.9 135 29.6
Gohir.D01G180500 Gossypium hirsutum HOM05D003340 ORTHO05D003775 3.4e-07 58.9 126 28.6
Gorai.002G222100 Gossypium raimondii HOM05D003340 ORTHO05D003775 3.4e-07 58.9 126 28.6
Lsat_1_v5_gn_1_10021 Lactuca sativa HOM05D003340 ORTHO05D003775 3.4e-07 58.9 139 25.9
Psat5g087400 Pisum sativum HOM05D003340 ORTHO05D003775 3.4e-07 58.9 127 27.6
EL10Ac1g01010 Beta vulgaris HOM05D003340 ORTHO05D003775 4.4e-07 58.5 89 36.0
EL10Ac4g09660 Beta vulgaris HOM05D003340 ORTHO05D003775 4.4e-07 58.5 93 33.3
Manes.18G077306 Manihot esculenta HOM05D003340 ORTHO05D003775 4.4e-07 58.5 140 29.3
Rhsim06G0103500 Rhododendron simsii HOM05D003340 ORTHO05D003775 4.4e-07 58.5 128 31.2
Gorai.009G283300 Gossypium raimondii HOM05D003340 ORTHO05D003775 5.8e-07 58.2 97 32.0
GSVIVG01022376001 Vitis vinifera HOM05D003340 ORTHO05D003775 5.8e-07 58.2 84 34.5
Ah.06g188530 Amaranthus hybridus HOM05D003340 ORTHO05D003775 7.5e-07 57.8 86 33.7
Dinv07220 Davidia involucrata HOM05D003340 ORTHO05D003775 7.5e-07 57.8 127 26.8
Gohir.D05G270700 Gossypium hirsutum HOM05D003340 ORTHO05D003775 7.5e-07 57.8 97 32.0
TAR381G1109 Trochodendron aralioides HOM05D003340 ORTHO05D003775 7.5e-07 57.8 126 27.0
CANSAT25G3576 Cannabis sativa HOM05D003340 ORTHO05D003775 9.8e-07 57.4 138 28.3
HPP92_019003 Vanilla planifolia HOM05D003340 ORTHO05D003775 1.3e-06 57.0 121 27.3
Cc10_g11880 Coffea canephora HOM05D003340 ORTHO05D003775 1.7e-06 56.6 123 26.0
Lalb_Chr10g0101671 Lupinus albus HOM05D003340 ORTHO05D003775 2.2e-06 56.2 138 27.5
Nn3g19971 Nelumbo nucifera HOM05D003340 ORTHO05D003775 2.2e-06 56.2 102 28.4
Duzib041G0745 Durio zibethinus HOM05D003340 ORTHO05D003775 2.9e-06 55.8 138 27.5
COL.COLO4_36312 Corchorus olitorius HOM05D003340 ORTHO05D003775 3.7e-06 55.5 126 27.8
FAN15G0091 Fragaria x ananassa HOM05D003340 ORTHO05D003775 3.7e-06 55.5 137 27.7
Glyma.13G079000 Glycine max HOM05D003340 ORTHO05D003775 4.9e-06 55.1 136 27.9
Os01g0833400 Oryza sativa ssp. japonica HOM05D003340 ORTHO05D003775 4.9e-06 55.1 90 28.9
FAN20G1789 Fragaria x ananassa HOM05D003340 ORTHO05D003775 6.4e-06 54.7 136 26.5
QL09p034593 Quercus lobata HOM05D003340 ORTHO05D003775 6.4e-06 54.7 133 27.8
THA.LOC104806822 Tarenaya hassleriana HOM05D003340 ORTHO05D003775 8.3e-06 54.3 139 29.5
TAR636G0511 Trochodendron aralioides HOM05D003340 ORTHO05D003775 8.3e-06 54.3 124 28.2


User provided reference genes

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