Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g10990 Fragaria vesca HOM05D005999 ORTHO05D003360 2.3e-142 509.6 416 100.0
FAN19G2768 Fragaria x ananassa HOM05D005999 ORTHO05D003360 2.0e-138 496.5 416 94.0
FAN23G1568 Fragaria x ananassa HOM05D005999 ORTHO05D003360 8.3e-129 464.5 416 95.2
RcHm_v2.0_Chr2g0098251 Rosa chinensis HOM05D005999 ORTHO05D003360 2.6e-114 416.4 422 84.6
Prupe.7G175600 Prunus persica HOM05D005999 ORTHO05D003360 1.8e-94 350.5 293 65.9
MD15G1236900 Malus domestica HOM05D005999 ORTHO05D003360 1.1e-88 331.3 281 64.4
Eucgr.I02298 Eucalyptus grandis HOM05D005999 ORTHO05D003360 2.8e-76 290.0 228 66.2
Manes.01G151300 Manihot esculenta HOM05D005999 ORTHO05D003360 1.1e-75 288.1 298 55.7
PGR119G0821 Punica granatum HOM05D005999 ORTHO05D003360 6.5e-73 278.9 289 55.4
TWI73G0962 Tripterygium wilfordii HOM05D005999 ORTHO05D003360 4.2e-72 276.2 235 62.6
Cfa007034 Carpinus fangiana HOM05D005999 ORTHO05D003360 4.6e-71 272.7 288 55.9
CANSAT25G3254 Cannabis sativa HOM05D005999 ORTHO05D003360 7.9e-71 271.9 296 54.1
CiPaw.08G125500 Carya illinoinensis HOM05D005999 ORTHO05D003360 7.9e-71 271.9 293 56.0
Haze_03698 Corylus avellana HOM05D005999 ORTHO05D003360 7.9e-71 271.9 287 55.4
Potri.007G060400 Populus trichocarpa HOM05D005999 ORTHO05D003360 1.0e-70 271.6 294 52.0
Sabra05G0086500 Salix brachista HOM05D005999 ORTHO05D003360 1.4e-70 271.2 287 54.7
ClCG01G020640 Citrullus lanatus HOM05D005999 ORTHO05D003360 1.8e-70 270.8 235 60.9
Dinv08545 Davidia involucrata HOM05D005999 ORTHO05D003360 2.3e-70 270.4 302 57.3
Potri.005G105800 Populus trichocarpa HOM05D005999 ORTHO05D003360 8.8e-70 268.5 286 54.2
MELO3C007947.2 Cucumis melo HOM05D005999 ORTHO05D003360 1.5e-69 267.7 291 51.5
arahy.Tifrunner.gnm1.ann1.74V199 Arachis hypogaea HOM05D005999 ORTHO05D003360 2.0e-69 267.3 284 53.5
arahy.Tifrunner.gnm1.ann1.JK0YGC Arachis hypogaea HOM05D005999 ORTHO05D003360 2.0e-69 267.3 284 53.5
Gohir.A02G174800 Gossypium hirsutum HOM05D005999 ORTHO05D003360 5.7e-69 265.8 235 60.9
Gorai.003G005300 Gossypium raimondii HOM05D005999 ORTHO05D003360 7.4e-69 265.4 235 60.4
Gohir.D03G005000 Gossypium hirsutum HOM05D005999 ORTHO05D003360 1.3e-68 264.6 276 55.1
Thecc.01G010800 Theobroma cacao HOM05D005999 ORTHO05D003360 1.7e-68 264.2 297 50.5
CsaV3_6G047550 Cucumis sativus L. HOM05D005999 ORTHO05D003360 2.2e-68 263.8 287 52.6
Lalb_Chr05g0212151 Lupinus albus HOM05D005999 ORTHO05D003360 6.3e-68 262.3 292 52.1
QL06p052235 Quercus lobata HOM05D005999 ORTHO05D003360 8.2e-68 261.9 235 59.6
Medtr5g022050 Medicago truncatula HOM05D005999 ORTHO05D003360 6.9e-67 258.8 277 51.6
Psat2g151600 Pisum sativum HOM05D005999 ORTHO05D003360 1.2e-66 258.1 281 50.9
GSVIVG01005198001 Vitis vinifera HOM05D005999 ORTHO05D003360 1.2e-66 258.1 232 60.8
Ca_24948_v3 Cicer arietinum L. HOM05D005999 ORTHO05D003360 1.5e-66 257.7 288 50.7
A09p10170 Brassica napus HOM05D005999 ORTHO05D003360 2.0e-66 257.3 276 50.7
C09p12060 Brassica napus HOM05D005999 ORTHO05D003360 2.0e-66 257.3 232 55.6
BraA09t36663Z Brassica rapa HOM05D005999 ORTHO05D003360 2.0e-66 257.3 233 56.2
Thhalv10004296m.g Eutrema salsugineum HOM05D005999 ORTHO05D003360 2.6e-66 256.9 230 56.1
BcaC04g23109 Brassica carinata HOM05D005999 ORTHO05D003360 3.4e-66 256.5 234 55.1
Sed0006391 Sechium edule HOM05D005999 ORTHO05D003360 3.4e-66 256.5 221 60.2
BolC9t54096H Brassica oleracea HOM05D005999 ORTHO05D003360 4.5e-66 256.1 234 55.1
THA.LOC104826498 Tarenaya hassleriana HOM05D005999 ORTHO05D003360 7.7e-66 255.4 230 57.8
Duzib187G1063 Durio zibethinus HOM05D005999 ORTHO05D003360 1.0e-65 255.0 300 50.3
Hma1.2p1_0315F.1_g122640 Hydrangea macrophylla HOM05D005999 ORTHO05D003360 2.9e-65 253.4 236 56.4
AL8G45550 Arabidopsis lyrata HOM05D005999 ORTHO05D003360 3.8e-65 253.1 284 48.9
CARHR281700 Cardamine hirsuta HOM05D005999 ORTHO05D003360 1.1e-64 251.5 229 54.6
Lj2g0014093 Lotus japonicus HOM05D005999 ORTHO05D003360 1.4e-64 251.1 294 51.4
Sp2g30630 Schrenkiella parvula HOM05D005999 ORTHO05D003360 1.4e-64 251.1 230 54.3
BcaB04g20127 Brassica carinata HOM05D005999 ORTHO05D003360 3.2e-64 250.0 279 49.1
Aa31LG9G1330 Aethionema arabicum HOM05D005999 ORTHO05D003360 4.2e-64 249.6 226 55.3
TAR628G0133 Trochodendron aralioides HOM05D005999 ORTHO05D003360 9.4e-64 248.4 283 52.7
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 1.2e-63 248.1 297 49.5
Glyma.01G161900 Glycine max HOM05D005999 ORTHO05D003360 1.2e-63 248.1 298 50.7
Glyma.11G081800 Glycine max HOM05D005999 ORTHO05D003360 1.2e-63 248.1 246 55.3
Phvul.002G104000 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 1.2e-63 248.1 290 51.7
AT5G66055 Arabidopsis thaliana HOM05D005999 ORTHO05D003360 2.1e-63 247.3 289 46.7
Carub.0008s2845 Capsella rubella HOM05D005999 ORTHO05D003360 2.1e-63 247.3 274 49.3
Ciclev10025620m.g Citrus clementina HOM05D005999 ORTHO05D003360 2.7e-63 246.9 299 47.8
Nitab4.5_0000188g0250 Nicotiana tabacum HOM05D005999 ORTHO05D003360 1.4e-62 244.6 317 48.3
Nitab4.5_0005409g0010 Nicotiana tabacum HOM05D005999 ORTHO05D003360 1.8e-62 244.2 316 47.5
CSS0035556 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 8.8e-62 241.9 295 50.2
CSS0001074 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 1.1e-61 241.5 234 54.3
HanXRQChr09g0257041 Helianthus annuus HOM05D005999 ORTHO05D003360 5.7e-61 239.2 237 53.6
Lsat_1_v5_gn_4_143840 Lactuca sativa HOM05D005999 ORTHO05D003360 2.2e-60 237.3 233 53.6
Atru.chr3.914 Acer truncatum HOM05D005999 ORTHO05D003360 3.7e-60 236.5 242 51.2
Atru.chr3.919 Acer truncatum HOM05D005999 ORTHO05D003360 3.7e-60 236.5 242 51.2
Sopen02g012860 Solanum pennellii HOM05D005999 ORTHO05D003360 3.7e-60 236.5 314 45.5
Cc01_g06010 Coffea canephora HOM05D005999 ORTHO05D003360 4.8e-60 236.1 294 48.0
TPR.G25134 Trifolium pratense HOM05D005999 ORTHO05D003360 4.8e-60 236.1 283 47.3
Lj6A806T47 Lonicera japonica HOM05D005999 ORTHO05D003360 3.1e-59 233.4 291 48.1
Solyc02g061820.4 Solanum lycopersicum HOM05D005999 ORTHO05D003360 4.1e-59 233.0 314 45.5
VMungo1215G1128 Vigna mungo HOM05D005999 ORTHO05D003360 5.3e-59 232.6 241 52.3
Actinidia28736 Actinidia chinensis HOM05D005999 ORTHO05D003360 7.0e-59 232.3 218 55.5
PGSC0003DMG400008679 Solanum tuberosum HOM05D005999 ORTHO05D003360 1.2e-58 231.5 313 46.0
Nn6g31889 Nelumbo nucifera HOM05D005999 ORTHO05D003360 1.0e-57 228.4 233 55.8
Lalb_Chr16g0377331 Lupinus albus HOM05D005999 ORTHO05D003360 2.9e-57 226.9 289 48.1
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 1.1e-56 224.9 241 49.4
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 1.5e-56 224.6 300 46.0
CDE05G3499 Ceratophyllum demersum HOM05D005999 ORTHO05D003360 5.5e-56 222.6 236 53.0
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 1.2e-55 221.5 300 45.3
EL10Ac6g13337 Beta vulgaris HOM05D005999 ORTHO05D003360 4.7e-55 219.5 239 49.0
vmacro18444 Vaccinium macrocarpon HOM05D005999 ORTHO05D003360 4.7e-55 219.5 227 54.6
SGA_v2.0_scaffold58G20568 Striga asiatica HOM05D005999 ORTHO05D003360 6.1e-55 219.2 232 52.6
CAN.G865.12 Capsicum annuum HOM05D005999 ORTHO05D003360 8.0e-55 218.8 244 50.8
Medtr5g023090 Medicago truncatula HOM05D005999 ORTHO05D003360 3.3e-53 213.4 307 42.3
MSTRG.3620 Avicennia marina HOM05D005999 ORTHO05D003360 5.7e-53 212.6 232 49.6
DCAR_011582 Daucus carota HOM05D005999 ORTHO05D003360 1.8e-51 207.6 242 49.2
SalBow5G5732 Salvia bowleyana HOM05D005999 ORTHO05D003360 4.5e-50 203.0 245 46.9
Aqoxy5G01092 Aquilegia oxysepala HOM05D005999 ORTHO05D002169 2.2e-49 200.7 240 47.9
ATR0661G352 Amborella trichopoda HOM05D005999 ORTHO05D003360 2.9e-49 200.3 273 42.5
Hund16623 Selenicereus undatus HOM05D005999 ORTHO05D003360 4.2e-48 196.4 246 45.5
Rhsim08G0029800 Rhododendron simsii HOM05D005999 ORTHO05D003360 7.2e-48 195.7 255 47.1
Ah.02g129080 Amaranthus hybridus HOM05D005999 ORTHO05D003360 9.4e-48 195.3 240 47.5
Migut.L00736 Erythranthe guttata HOM05D005999 ORTHO05D003360 2.7e-47 193.7 240 46.2
HPP92_001740 Vanilla planifolia HOM05D005999 ORTHO05D003360 3.6e-47 193.4 232 47.4
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 6.1e-47 192.6 285 43.5
COL.COLO4_22501 Corchorus olitorius HOM05D005999 ORTHO05D003360 6.3e-44 182.6 161 58.4
Glyma.11G081900 Glycine max HOM05D005999 ORTHO05D003360 3.5e-42 176.8 291 41.6
Phvul.002G103900 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 4.2e-40 169.9 234 46.2
VMungo1215G2992 Vigna mungo HOM05D005999 ORTHO05D003360 1.5e-37 161.4 234 45.3
Os03g0135600 Oryza sativa ssp. japonica HOM05D005999 ORTHO05D003360 3.4e-37 160.2 234 41.5
Zm00001eb002820 Zea mays HOM05D005999 ORTHO05D003360 2.7e-34 150.6 233 38.6
ECA232G4368 Erigeron canadensis HOM05D005999 ORTHO05D003360 7.8e-34 149.1 163 47.2
Oeu020651.1 Olea europaea HOM05D005999 ORTHO05D003360 2.3e-33 147.5 270 37.4
Cpa.g.sc6.318 Carica papaya HOM05D005999 ORTHO05D003360 2.9e-33 147.1 182 49.5
Cpa.g.sc6.319 Carica papaya HOM05D005999 ORTHO05D003360 3.6e-31 140.2 88 72.7
AUR62026380 Chenopodium quinoa HOM05D005999 ORTHO05D003360 1.8e-27 127.9 93 64.5
PSO017G5004 Papaver somniferum HOM05D005999 ORTHO05D003360 2.4e-27 127.5 242 38.4
AUR62026216 Chenopodium quinoa HOM05D005999 ORTHO05D003360 9.2e-27 125.6 93 63.4
Peaxi162Scf00439g00012 Petunia axillaris HOM05D005999 ORTHO05D003360 6.6e-25 119.4 179 45.3
SalBow3G2044 Salvia bowleyana HOM05D005999 ORTHO05D003360 1.3e-17 95.1 111 43.2
SalBow6G2335 Salvia bowleyana HOM05D002275 ORTHO05D003360 1.4e-14 85.1 111 39.6
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 4.0e-14 83.6 111 39.6
SalBow6G0049 Salvia bowleyana HOM05D005999 ORTHO05D003360 4.0e-14 83.6 111 39.6
MD02G1122900 Malus domestica HOM05D005999 ORTHO05D003360 9.9e-13 79.0 65 61.5
Zm00001eb170850 Zea mays HOM05D005999 ORTHO05D003360 2.2e-12 77.8 72 51.4
RcHm_v2.0_Chr1g0316981 Rosa chinensis HOM05D005999 ORTHO05D003360 1.1e-11 75.5 44 77.3
Zm00001eb211570 Zea mays HOM05D005999 ORTHO05D003360 4.1e-11 73.6 54 59.3
Zm00001eb242830 Zea mays HOM05D005999 ORTHO05D003360 4.1e-11 73.6 54 59.3
CANSAT01G1435 Cannabis sativa HOM05D005999 ORTHO05D003360 1.2e-10 72.0 48 64.6
RcHm_v2.0_Chr1g0316921 Rosa chinensis HOM05D005999 ORTHO05D003360 1.3e-09 68.6 40 75.0
Lsat_1_v5_gn_3_14980 Lactuca sativa HOM05D005999 ORTHO05D003360 1.9e-08 64.7 107 39.3
CANSAT54G2046 Cannabis sativa HOM05D005999 ORTHO05D003360 4.0e-06 57.0 48 56.2
Glyma.17G206001 Glycine max HOM05D005999 ORTHO05D003360 4.0e-06 57.0 76 44.7


User provided reference genes

Program Settings