Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 0.0e+00 1116.7 803 100.0
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 0.0e+00 1080.1 796 98.9
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 4.8e-290 1001.1 782 92.6
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 7.6e-288 993.8 782 88.9
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 8.8e-252 874.0 784 79.0
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 3.6e-229 798.9 778 69.2
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 9.2e-225 784.3 778 72.2
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 7.1e-209 731.5 801 66.9
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 1.1e-204 717.6 803 62.8
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 5.4e-201 705.3 789 66.9
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 6.6e-199 698.4 789 64.8
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 2.1e-197 693.3 810 63.8
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 7.1e-193 678.3 768 71.2
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 1.0e-191 674.5 792 61.2
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 3.9e-191 672.5 789 63.2
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 6.4e-186 655.2 766 60.4
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 1.1e-185 654.4 765 63.3
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 3.2e-185 652.9 789 66.2
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 1.5e-182 644.0 782 63.9
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 1.9e-182 643.7 774 59.2
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 1.9e-182 643.7 803 62.9
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 5.6e-182 642.1 792 62.9
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 6.2e-181 638.6 737 62.4
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 1.4e-180 637.5 741 62.5
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 3.1e-180 636.3 741 62.5
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 9.0e-180 634.8 768 62.9
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 2.2e-178 630.2 787 58.3
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 5.5e-177 625.5 512 70.3
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 7.1e-177 625.2 783 60.8
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 5.1e-175 619.0 790 62.5
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 3.1e-172 609.8 764 59.8
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 3.1e-172 609.8 796 57.8
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.0e-171 607.1 792 61.5
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 2.6e-171 606.7 792 61.5
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 2.6e-171 606.7 778 62.5
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 4.5e-171 605.9 764 61.6
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 6.7e-167 592.0 789 63.1
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 5.7e-166 589.0 773 55.1
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 5.7e-166 589.0 725 67.0
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 7.4e-166 588.6 790 58.0
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 8.2e-165 585.1 748 65.2
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.8e-164 583.9 766 60.7
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 2.4e-164 583.6 795 58.0
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 3.1e-164 583.2 750 65.2
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 1.0e-162 578.2 786 57.6
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.3e-162 577.8 797 62.7
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 6.5e-162 575.5 768 59.9
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 7.2e-161 572.0 780 58.3
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 1.6e-160 570.9 748 61.9
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 1.3e-159 567.8 798 58.6
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 3.9e-159 566.2 790 58.0
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 8.7e-159 565.1 786 57.1
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 4.3e-158 562.8 762 59.6
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 7.4e-158 562.0 743 63.4
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 7.4e-158 562.0 743 63.4
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 4.8e-157 559.3 767 63.2
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 4.1e-156 556.2 770 60.1
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 5.3e-156 555.8 754 62.5
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 5.9e-155 552.4 794 56.8
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 2.3e-151 540.4 805 57.9
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 8.8e-151 538.5 764 57.6
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 1.1e-150 538.1 791 57.0
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.1e-150 538.1 791 57.0
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 4.4e-150 536.2 794 54.5
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 1.7e-149 534.3 786 54.7
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 1.8e-148 530.8 790 58.6
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 4.1e-148 529.6 754 50.7
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 1.3e-146 524.6 727 57.6
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 3.8e-146 523.1 805 49.7
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 5.0e-146 522.7 769 59.9
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 1.9e-145 520.8 748 54.8
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 9.4e-145 518.5 811 54.4
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 1.8e-143 514.2 785 51.5
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 5.2e-143 512.7 783 55.8
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 1.1e-142 511.5 772 52.3
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 4.4e-142 509.6 797 48.6
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 2.8e-141 506.9 562 80.2
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 9.1e-140 501.9 780 55.4
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 5.0e-138 496.1 790 55.2
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 1.9e-137 494.2 562 79.7
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 8.0e-136 488.8 744 53.5
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 1.4e-135 488.0 787 53.4
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 8.8e-135 485.3 793 58.4
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 8.8e-135 485.3 786 51.5
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 2.6e-134 483.8 769 55.8
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 4.4e-134 483.0 762 56.3
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 4.4e-134 483.0 791 52.7
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.7e-133 481.1 825 54.7
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.1e-132 478.4 586 63.5
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 1.8e-132 477.6 780 51.0
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.0e-127 461.8 746 54.6
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 3.4e-126 456.8 768 51.3
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.3e-125 454.9 787 48.5
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 2.2e-125 454.1 743 51.7
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 2.8e-125 453.8 767 52.4
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 1.2e-123 448.4 794 52.8
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 3.2e-121 440.3 418 70.3
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 1.1e-103 382.1 769 52.0
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 7.5e-102 375.9 767 44.5
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 4.4e-94 350.1 817 40.3
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 1.3e-93 348.6 765 49.0
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 1.2e-83 315.5 190 93.7
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 4.6e-83 313.5 756 33.7
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 4.3e-81 307.0 759 41.1
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 2.2e-77 294.7 527 40.8
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.7e-75 287.7 257 63.4
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.3e-74 284.6 278 59.4
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 1.0e-66 259.2 193 73.1
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 3.3e-65 254.2 707 31.5
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 9.3e-60 236.1 593 42.2
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 3.5e-59 234.2 512 58.2
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 3.5e-51 207.6 216 83.8
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 1.8e-50 205.3 123 92.7
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 8.7e-50 203.0 132 84.1
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.5e-49 202.2 165 68.5
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 4.1e-47 194.1 137 83.9
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 3.2e-44 184.5 241 54.8
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 2.6e-38 164.9 179 55.9
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 3.8e-37 161.0 166 61.4
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.1e-35 155.2 168 54.2
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-35 154.8 338 36.1
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 3.6e-35 154.5 328 59.8
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 1.7e-21 109.0 95 71.6
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 2.7e-19 101.7 83 61.4
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 1.0e-18 99.8 130 52.3
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 2.3e-18 98.6 79 72.2
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.7e-16 92.4 56 89.3
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 1.4e-15 89.4 55 83.6
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 2.2e-13 82.0 145 38.6
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 1.1e-12 79.7 47 93.6
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 3.2e-12 78.2 147 40.1
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 7.2e-12 77.0 155 41.3
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 2.7e-11 75.1 63 66.7
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 2.7e-11 75.1 63 66.7
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 7.5e-09 67.0 51 64.7
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 4.8e-08 64.3 66 57.6
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 8.3e-08 63.5 52 73.1
Glyma.18G186501 Glycine max HOM05D001343 ORTHO05D007223 7.0e-07 60.5 35 82.9
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 9.1e-07 60.1 93 39.8
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.7e-06 58.5 52 63.5
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 5.9e-06 57.4 100 36.0


User provided reference genes

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