Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 1.7e-235 818.9 409 100.0
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 6.5e-235 817.0 409 99.8
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.0e-232 809.7 409 99.0
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.4e-229 799.3 409 97.6
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.5e-226 789.3 409 95.6
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.5e-226 789.3 409 95.6
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 3.0e-216 755.0 415 91.3
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 4.9e-174 614.8 413 76.8
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 2.6e-159 565.8 415 71.1
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.9e-146 523.1 403 67.0
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 1.1e-144 517.3 399 66.7
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 4.0e-144 515.4 396 66.9
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 9.0e-144 514.2 400 66.8
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 3.9e-139 498.8 400 63.5
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 8.7e-139 497.7 412 62.6
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.1e-138 497.3 402 63.7
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 6.3e-137 491.5 398 62.8
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 5.3e-136 488.4 404 62.6
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.2e-135 487.3 399 63.4
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.2e-135 487.3 404 60.6
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.5e-135 486.9 401 63.8
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.5e-135 486.9 401 63.8
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 3.4e-135 485.7 400 63.8
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 7.7e-135 484.6 406 62.1
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 1.7e-134 483.4 404 62.9
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.1e-133 480.7 400 63.2
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 1.1e-133 480.7 405 62.2
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 1.4e-133 480.3 411 61.1
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 4.6e-132 475.3 399 61.7
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 6.1e-132 474.9 407 61.7
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 7.9e-132 474.6 399 60.9
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 7.9e-132 474.6 400 61.2
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 2.3e-131 473.0 409 59.4
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 3.9e-131 472.2 403 58.3
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 1.5e-130 470.3 403 59.6
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 5.7e-130 468.4 396 62.1
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 1.7e-129 466.8 398 60.8
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 2.2e-129 466.5 407 59.0
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 3.7e-129 465.7 403 61.0
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 6.3e-129 464.9 454 55.9
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 1.8e-128 463.4 399 60.2
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 3.1e-128 462.6 409 59.2
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 2.6e-127 459.5 406 59.6
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 1.0e-126 457.6 410 59.3
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.2e-126 456.4 399 59.9
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 8.5e-126 454.5 413 57.4
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 1.4e-125 453.8 411 59.4
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.5e-125 453.0 401 58.1
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 4.2e-125 452.2 461 55.3
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 9.4e-125 451.1 395 58.2
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 9.4e-125 451.1 412 60.4
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 1.2e-124 450.7 399 58.6
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 1.2e-124 450.7 402 58.5
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 1.2e-124 450.7 396 58.6
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.2e-124 450.7 396 60.6
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 2.1e-124 449.9 412 60.0
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 2.7e-124 449.5 414 59.9
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.0e-123 447.6 406 59.1
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 1.4e-123 447.2 398 57.3
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.4e-123 447.2 385 60.8
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 1.8e-123 446.8 398 59.5
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 3.9e-123 445.7 407 56.5
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 5.1e-123 445.3 400 57.2
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 6.7e-123 444.9 400 57.8
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 6.7e-123 444.9 423 57.2
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.0e-122 443.4 404 58.9
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 7.4e-122 441.4 407 57.0
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.3e-121 440.7 398 59.0
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.8e-120 436.8 401 57.1
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.1e-120 436.0 400 56.8
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 3.1e-120 436.0 401 57.9
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 4.1e-120 435.6 400 58.0
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 9.1e-120 434.5 401 59.1
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.2e-119 434.1 395 55.7
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 1.5e-119 433.7 408 55.6
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 2.6e-119 433.0 400 56.5
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 5.9e-119 431.8 411 57.9
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 5.9e-119 431.8 398 56.8
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 7.7e-119 431.4 401 56.6
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 2.9e-118 429.5 397 57.7
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.5e-117 427.2 434 53.2
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 9.4e-117 424.5 410 55.6
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 1.0e-115 421.0 415 56.6
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.8e-115 420.2 399 57.4
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.8e-113 412.9 410 54.9
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 8.2e-113 411.4 406 53.4
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 8.2e-113 411.4 407 56.0
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 4.1e-112 409.1 376 59.0
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 7.0e-112 408.3 409 54.0
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 7.0e-112 408.3 414 55.6
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 2.9e-110 402.9 394 55.3
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 7.2e-109 398.3 427 51.1
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 6.1e-108 395.2 410 53.7
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 8.0e-108 394.8 419 50.8
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 1.0e-107 394.4 411 54.3
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 4.0e-107 392.5 411 54.5
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 4.0e-107 392.5 413 49.6
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 1.3e-105 387.5 415 53.3
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 8.3e-105 384.8 405 52.6
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 1.1e-104 384.4 416 52.9
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 9.4e-101 371.3 400 50.0
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 7.5e-98 361.7 320 60.0
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 4.8e-97 359.0 298 61.1
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 5.4e-96 355.5 475 45.3
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 9.1e-96 354.8 291 59.8
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 2.8e-92 343.2 351 53.3
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 5.7e-90 335.5 406 48.0
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 9.8e-90 334.7 271 61.3
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 2.8e-89 333.2 466 41.8
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.6e-84 316.2 378 49.7
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 2.0e-82 310.5 409 46.9
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.6e-79 300.8 417 45.6
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.7e-78 297.4 248 62.9
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 3.0e-78 296.6 401 41.6
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 5.6e-77 292.4 447 40.9
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 6.4e-73 278.9 405 42.0
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 2.7e-71 273.5 379 44.3
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 2.7e-71 273.5 441 40.1
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 8.6e-70 268.5 465 37.6
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 1.9e-69 267.3 176 69.3
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 2.9e-65 253.4 405 39.8
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 4.7e-60 236.1 222 58.1
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 3.4e-58 229.9 373 37.5
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 4.9e-57 226.1 177 64.4
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 3.9e-54 216.5 317 43.2
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 4.3e-53 213.0 155 65.2
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 7.3e-53 212.2 181 59.1
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 8.1e-44 182.2 110 76.4
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 8.1e-44 182.2 175 50.3
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 5.1e-38 162.9 188 55.3
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 8.7e-38 162.2 197 48.7
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 6.5e-33 146.0 178 52.2
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 6.0e-31 139.4 160 48.8
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 6.7e-30 136.0 253 34.8
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 1.2e-26 125.2 99 58.6
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 2.0e-18 97.8 130 43.8
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 5.0e-17 93.2 97 51.5
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 3.2e-16 90.5 78 60.3
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 6.1e-15 86.3 63 68.3
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 6.1e-15 86.3 63 68.3
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 7.9e-15 85.9 78 56.4
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.5e-13 81.6 52 76.9
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.4e-11 74.3 159 36.5
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 4.5e-10 70.1 401 22.4
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 1.1e-08 65.5 109 38.5
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 1.1e-08 65.5 109 38.5


User provided reference genes

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