Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g09718 Fragaria vesca HOM05D002350 ORTHO05D000091 1.4e-44 182.6 89 100.0
FvH4_1g05990 Fragaria vesca HOM05D002350 ORTHO05D000091 1.4e-36 156.0 79 94.9
FAN19G2534 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.9e-36 154.5 79 93.7
FAN28G2427 Fragaria x ananassa HOM05D002350 ORTHO05D000091 8.2e-34 146.7 79 88.6
RcHm_v2.0_Chr2g0091691 Rosa chinensis HOM05D002350 ORTHO05D000091 1.8e-20 102.4 64 71.9
RcHm_v2.0_Chr2g0091711 Rosa chinensis HOM05D002350 ORTHO05D000091 2.0e-19 99.0 87 57.5
FAN19G1217 Fragaria x ananassa HOM05D002350 ORTHO05D000091 5.7e-19 97.4 79 55.7
FvH4_1g05980 Fragaria vesca HOM05D002350 ORTHO05D000091 7.5e-19 97.1 79 55.7
FAN26G1444 Fragaria x ananassa HOM05D002350 ORTHO05D000091 9.8e-19 96.7 79 55.7
FAN26G3334 Fragaria x ananassa HOM05D002350 ORTHO05D000091 2.2e-18 95.5 79 53.2
COL.COLO4_34763 Corchorus olitorius HOM05D002350 ORTHO05D000091 4.8e-18 94.4 77 57.1
Duzib150G1289 Durio zibethinus HOM05D002350 ORTHO05D000091 3.5e-16 88.2 77 55.8
Duzib168G2169 Durio zibethinus HOM05D002350 ORTHO05D000091 3.5e-16 88.2 77 55.8
Dinv41662 Davidia involucrata HOM05D002350 ORTHO05D000091 1.3e-15 86.3 75 54.7
Thecc.09G101800 Theobroma cacao HOM05D002350 ORTHO05D000091 2.9e-15 85.1 77 54.5
Gohir.D07G008700 Gossypium hirsutum HOM05D002350 ORTHO05D000091 5.0e-15 84.3 77 53.2
Gorai.001G008800 Gossypium raimondii HOM05D002350 ORTHO05D000091 5.0e-15 84.3 77 53.2
GSVIVG01015313001 Vitis vinifera HOM05D002350 ORTHO05D000091 8.6e-15 83.6 75 53.3
Gohir.A07G008300 Gossypium hirsutum HOM05D002350 ORTHO05D000091 4.2e-14 81.3 77 51.9
PGR102G2642 Punica granatum HOM05D002350 ORTHO05D000091 5.5e-14 80.9 86 44.2
Lsat_1_v5_gn_8_96860 Lactuca sativa HOM05D002350 ORTHO05D000091 1.2e-13 79.7 79 51.9
CAN.G1642.9 Capsicum annuum HOM05D002350 ORTHO05D000091 1.6e-13 79.3 80 50.0
Nitab4.5_0011131g0010 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.6e-13 79.3 92 46.7
AUR62021426 Chenopodium quinoa HOM05D002350 ORTHO05D000091 2.1e-13 79.0 81 51.9
HanXRQChr16g0507611 Helianthus annuus HOM05D002350 ORTHO05D000091 2.1e-13 79.0 81 49.4
ECA236G2339 Erigeron canadensis HOM05D002350 ORTHO05D000091 2.8e-13 78.6 74 50.0
Cfa003194 Carpinus fangiana HOM05D002350 ORTHO05D000091 4.7e-13 77.8 76 48.7
Atru.chr7.1447 Acer truncatum HOM05D002350 ORTHO05D000091 6.1e-13 77.4 85 44.7
RcHm_v2.0_Chr2g0091731 Rosa chinensis HOM05D002350 ORTHO05D000091 6.1e-13 77.4 86 47.7
Thhalv10001897m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 8.0e-13 77.0 77 45.5
Lj2g0003052 Lotus japonicus HOM05D002350 ORTHO05D000091 8.0e-13 77.0 77 50.6
Nn8g39091 Nelumbo nucifera HOM05D002350 ORTHO05D000091 8.0e-13 77.0 76 51.3
Nitab4.5_0000566g0160 Nicotiana tabacum HOM05D002350 ORTHO05D000091 8.0e-13 77.0 92 45.7
Solyc06g051190.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 8.0e-13 77.0 77 50.6
DCAR_010692 Daucus carota HOM05D002350 ORTHO05D000091 1.0e-12 76.6 81 49.4
EL10Ac8g18396 Beta vulgaris HOM05D002350 ORTHO05D000091 1.4e-12 76.3 76 50.0
BcaB08g34892 Brassica carinata HOM05D002350 ORTHO05D000091 1.4e-12 76.3 77 46.8
CAN.G160.37 Capsicum annuum HOM05D002350 ORTHO05D000091 1.4e-12 76.3 77 46.8
HanXRQChr16g0503771 Helianthus annuus HOM05D002350 ORTHO05D000091 1.4e-12 76.3 79 46.8
HanXRQChr16g0503781 Helianthus annuus HOM05D002350 ORTHO05D000091 1.4e-12 76.3 77 48.1
SalBow5G4215 Salvia bowleyana HOM05D002350 ORTHO05D000091 1.4e-12 76.3 80 53.8
Cfa003192 Carpinus fangiana HOM05D002350 ORTHO05D000091 1.8e-12 75.9 78 47.4
Solyc12g008420.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 1.8e-12 75.9 92 45.7
Sopen06g017040 Solanum pennellii HOM05D002350 ORTHO05D000091 1.8e-12 75.9 77 49.4
Sopen12g003370 Solanum pennellii HOM05D002350 ORTHO05D000091 1.8e-12 75.9 92 45.7
Peaxi162Scf00665g00310 Petunia axillaris HOM05D002350 ORTHO05D000091 2.3e-12 75.5 80 45.0
MD02G1064400 Malus domestica HOM05D002350 ORTHO05D000091 3.0e-12 75.1 87 42.5
AUR62010903 Chenopodium quinoa HOM05D002350 ORTHO05D000091 4.0e-12 74.7 77 49.4
Migut.K00531 Erythranthe guttata HOM05D002350 ORTHO05D000091 4.0e-12 74.7 79 50.6
RcHm_v2.0_Chr5g0014401 Rosa chinensis HOM05D002350 ORTHO05D000091 4.0e-12 74.7 87 48.3
Aa31LG8G16870 Aethionema arabicum HOM05D002350 ORTHO05D000091 5.2e-12 74.3 81 40.7
CANSAT56G4254 Cannabis sativa HOM05D002350 ORTHO05D000091 5.2e-12 74.3 88 48.9
Eucgr.C03763 Eucalyptus grandis HOM05D002350 ORTHO05D000091 5.2e-12 74.3 85 43.5
Lsat_1_v5_gn_5_144600 Lactuca sativa HOM05D002350 ORTHO05D000091 5.2e-12 74.3 72 52.8
SGA_v2.0_scaffold501G52502 Striga asiatica HOM05D002350 ORTHO05D000091 5.2e-12 74.3 79 51.9
PGSC0003DMG401000361 Solanum tuberosum HOM05D002350 ORTHO05D000091 6.8e-12 73.9 92 44.6
MSTRG.10607 Avicennia marina HOM05D002350 ORTHO05D000091 8.9e-12 73.6 79 53.2
Ah.14g083290 Amaranthus hybridus HOM05D002350 ORTHO05D000091 1.2e-11 73.2 79 44.3
Cc06_g10360 Coffea canephora HOM05D002350 ORTHO05D000091 1.2e-11 73.2 85 42.4
Duzib168G1106 Durio zibethinus HOM05D002350 ORTHO05D000091 1.2e-11 73.2 57 59.6
Nitab4.5_0000165g0030 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.2e-11 73.2 79 46.8
CANSAT56G1437 Cannabis sativa HOM05D002350 ORTHO05D000091 1.5e-11 72.8 78 48.7
Cc06_g10350 Coffea canephora HOM05D002350 ORTHO05D000091 1.5e-11 72.8 78 47.4
Nitab4.5_0001354g0020 Nicotiana tabacum HOM05D002350 ORTHO05D000091 2.6e-11 72.0 79 45.6
C07p01760 Brassica napus HOM05D002350 ORTHO05D000091 3.4e-11 71.6 76 42.1
MBI04_g40931_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 4.4e-11 71.2 72 51.4
Prupe.7G221200 Prunus persica HOM05D002350 ORTHO05D000091 4.4e-11 71.2 74 48.6
CSS0048603 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 5.7e-11 70.9 84 46.4
AUR62021425 Chenopodium quinoa HOM05D002350 ORTHO05D000091 5.7e-11 70.9 79 49.4
PSO210G7085 Papaver somniferum HOM05D002350 ORTHO05D000091 5.7e-11 70.9 75 49.3
Psat1g046880 Pisum sativum HOM05D002350 ORTHO05D000091 5.7e-11 70.9 77 45.5
BcaC06g36656 Brassica carinata HOM05D002350 ORTHO05D000091 7.5e-11 70.5 74 43.2
BcaC07g41231 Brassica carinata HOM05D002350 ORTHO05D000091 7.5e-11 70.5 77 44.2
A09p59080 Brassica napus HOM05D002350 ORTHO05D000091 7.5e-11 70.5 77 44.2
BolC7t40580H Brassica oleracea HOM05D002350 ORTHO05D000091 7.5e-11 70.5 74 43.2
AT2G19910 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 9.8e-11 70.1 81 44.4
C08p42360 Brassica napus HOM05D002350 ORTHO05D000091 9.8e-11 70.1 76 44.7
BolC8t51798H Brassica oleracea HOM05D002350 ORTHO05D000091 9.8e-11 70.1 76 44.7
CDE05G3285 Ceratophyllum demersum HOM05D002350 ORTHO05D000091 9.8e-11 70.1 76 42.1
FAN23G2545 Fragaria x ananassa HOM05D002350 ORTHO05D000091 9.8e-11 70.1 50 62.0
MD15G1195400 Malus domestica HOM05D002350 ORTHO05D000091 9.8e-11 70.1 78 47.4
Ciclev10007331m.g Citrus clementina HOM05D002350 ORTHO05D000091 1.3e-10 69.7 75 42.7
TPR.G9139 Trifolium pratense HOM05D002350 ORTHO05D000091 1.3e-10 69.7 77 45.5
arahy.Tifrunner.gnm1.ann1.HAD3B9 Arachis hypogaea HOM05D002350 ORTHO05D000091 1.7e-10 69.3 78 43.6
ATR0705G139 Amborella trichopoda HOM05D002350 ORTHO05D000091 2.2e-10 68.9 86 43.0
CARHR110370 Cardamine hirsuta HOM05D002350 ORTHO05D000091 2.2e-10 68.9 79 44.3
Lj4C391G5 Lonicera japonica HOM05D002350 ORTHO05D000091 2.2e-10 68.9 80 45.0
PSO210G2001 Papaver somniferum HOM05D002350 ORTHO05D000091 2.2e-10 68.9 75 48.0
BraA09t41291Z Brassica rapa HOM05D002350 ORTHO05D000091 2.8e-10 68.6 77 44.2
Carub.0003s3418 Capsella rubella HOM05D002350 ORTHO05D000091 2.8e-10 68.6 80 42.5
Medtr8g064670 Medicago truncatula HOM05D002350 ORTHO05D000091 2.8e-10 68.6 77 45.5
TPR.G21372 Trifolium pratense HOM05D002350 ORTHO05D000091 2.8e-10 68.6 78 44.9
TPR.G40047 Trifolium pratense HOM05D002350 ORTHO05D000091 2.8e-10 68.6 77 45.5
AT2G19930 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 3.7e-10 68.2 81 45.7
CiPaw.03G226000 Carya illinoinensis HOM05D002350 ORTHO05D000091 3.7e-10 68.2 76 43.4
Oeu064190.1 Olea europaea HOM05D002350 ORTHO05D000091 3.7e-10 68.2 89 43.8
Sp3g33240 Schrenkiella parvula HOM05D002350 ORTHO05D000091 3.7e-10 68.2 80 42.5
Migut.N01381 Erythranthe guttata HOM05D002350 ORTHO05D000091 4.9e-10 67.8 55 60.0
Manes.16G110000 Manihot esculenta HOM05D002350 ORTHO05D000091 4.9e-10 67.8 79 44.3
Phvul.004G176400 Phaseolus vulgaris HOM05D002350 ORTHO05D000091 4.9e-10 67.8 79 48.1
TAR624G0594 Trochodendron aralioides HOM05D002350 ORTHO05D000091 4.9e-10 67.8 76 47.4
ClCG03G016200 Citrullus lanatus HOM05D002350 ORTHO05D000091 6.3e-10 67.4 75 44.0
VMungo0464G0493 Vigna mungo HOM05D002350 ORTHO05D000091 6.3e-10 67.4 78 47.4
EL10Ac8g18397 Beta vulgaris HOM05D002350 ORTHO05D000091 8.3e-10 67.0 56 53.6
SEGI_40988 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 8.3e-10 67.0 74 41.9
BraA07t27873Z Brassica rapa HOM05D002350 ORTHO05D000091 1.1e-09 66.6 75 42.7
MBI04_g17295_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 1.1e-09 66.6 76 46.1
AL3G48270 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 1.4e-09 66.2 81 44.4
arahy.Tifrunner.gnm1.ann1.2RFB5Y Arachis hypogaea HOM05D002350 ORTHO05D000091 1.4e-09 66.2 78 42.3
BcaC06g36654 Brassica carinata HOM05D002350 ORTHO05D000091 1.4e-09 66.2 80 41.2
C07p01790 Brassica napus HOM05D002350 ORTHO05D000091 1.4e-09 66.2 80 41.2
BolC7t40582H Brassica oleracea HOM05D002350 ORTHO05D000091 1.4e-09 66.2 80 41.2
ECA234G0874 Erigeron canadensis HOM05D002350 ORTHO05D000091 1.4e-09 66.2 77 44.2
arahy.Tifrunner.gnm1.ann1.7X0VYH Arachis hypogaea HOM05D002350 ORTHO05D000091 1.8e-09 65.9 78 41.0
Carub.0003s3417 Capsella rubella HOM05D002350 ORTHO05D000091 1.8e-09 65.9 80 38.8
Actinidia32657 Actinidia chinensis HOM05D002350 ORTHO05D000091 2.4e-09 65.5 79 40.5
Rhsim03G0238400 Rhododendron simsii HOM05D002350 ORTHO05D000091 2.4e-09 65.5 84 45.2
AL3G48310 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 3.1e-09 65.1 80 40.0
Sabra06G0136400 Salix brachista HOM05D002350 ORTHO05D000091 3.1e-09 65.1 78 44.9
Haze_25814 Corylus avellana HOM05D002350 ORTHO05D000091 4.1e-09 64.7 81 43.2
Rhsim03G0237700 Rhododendron simsii HOM05D002350 ORTHO05D000091 4.1e-09 64.7 72 47.2
Thhalv10001896m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 5.4e-09 64.3 76 42.1
BcaB03g16779 Brassica carinata HOM05D002350 ORTHO05D000091 7.0e-09 63.9 74 41.9
BraA07t27876Z Brassica rapa HOM05D002350 ORTHO05D000091 9.2e-09 63.5 80 40.0
CAN.G90.12 Capsicum annuum HOM05D002350 ORTHO05D000091 9.2e-09 63.5 57 49.1
Ca_25564_v3 Cicer arietinum L. HOM05D002350 ORTHO05D000091 9.2e-09 63.5 83 43.4
Glyma.01G008700 Glycine max HOM05D002350 ORTHO05D000091 9.2e-09 63.5 70 44.3
Os01g0198000 Oryza sativa ssp. japonica HOM05D002350 ORTHO05D000091 9.2e-09 63.5 59 47.5
DCAR_018431 Daucus carota HOM05D002350 ORTHO05D000091 1.2e-08 63.2 70 42.9
Potri.007G081300 Populus trichocarpa HOM05D002350 ORTHO05D000091 1.2e-08 63.2 78 44.9
Hund26256 Selenicereus undatus HOM05D002350 ORTHO05D000091 1.2e-08 63.2 74 47.3
Sed0013258 Sechium edule HOM05D002350 ORTHO05D000091 1.6e-08 62.8 75 41.3
Sc08g0007950 Simmondsia chinensis HOM05D002350 ORTHO05D000091 2.0e-08 62.4 79 40.5
vmacro06244 Vaccinium macrocarpon HOM05D002350 ORTHO05D000091 2.0e-08 62.4 76 44.7
BraA10t43806Z Brassica rapa HOM05D002350 ORTHO05D000091 2.7e-08 62.0 81 37.0
Medtr6g088660 Medicago truncatula HOM05D002350 ORTHO05D000091 2.7e-08 62.0 79 45.6
Aqoxy7G03876 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 3.5e-08 61.6 76 44.7
CARHR110360 Cardamine hirsuta HOM05D002350 ORTHO05D000091 3.5e-08 61.6 81 39.5
CAN.G212.6 Capsicum annuum HOM05D002350 ORTHO05D000091 4.5e-08 61.2 68 45.6
CsaV3_1G039730 Cucumis sativus L. HOM05D002350 ORTHO05D000091 4.5e-08 61.2 75 42.7
Lj4C392G1 Lonicera japonica HOM05D002350 ORTHO05D000091 7.8e-08 60.5 79 40.5
Potri.006G164400 Populus trichocarpa HOM05D002350 ORTHO05D000091 7.8e-08 60.5 78 43.6
A10p17220 Brassica napus HOM05D002350 ORTHO05D000091 1.0e-07 60.1 81 37.0
Rhsim03G0237500 Rhododendron simsii HOM05D002350 ORTHO05D000091 1.3e-07 59.7 82 40.2
AL3G48290 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 1.7e-07 59.3 62 40.3
MELO3C015406.2 Cucumis melo HOM05D002350 ORTHO05D000091 1.7e-07 59.3 75 42.7
Os01g0197900 Oryza sativa ssp. japonica HOM05D002350 ORTHO05D000091 1.7e-07 59.3 59 45.8
AUR62021424 Chenopodium quinoa HOM05D002350 ORTHO05D000091 3.9e-07 58.2 68 45.6
Lalb_Chr14g0371831 Lupinus albus HOM05D002350 ORTHO05D000091 1.5e-06 56.2 61 44.3
Haze_25813 Corylus avellana HOM05D002350 ORTHO05D000091 3.3e-06 55.1 59 45.8
BcaC04g19659 Brassica carinata HOM05D002350 ORTHO05D000091 5.6e-06 54.3 83 33.7


User provided reference genes

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