Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g09691 Fragaria vesca HOM05D000023 ORTHO05D009195 4.0e-145 518.1 262 100.0
FvH4_1g21381 Fragaria vesca HOM05D008281 ORTHO05D009195 7.1e-17 92.0 78 59.0
FvH4_3g32705 Fragaria vesca HOM05D000023 ORTHO05D009195 9.3e-17 91.7 68 61.8
FvH4_3g30831 Fragaria vesca HOM05D017247 ORTHO05D009195 3.5e-16 89.7 69 60.9
FvH4_6g06672 Fragaria vesca HOM05D000023 ORTHO05D009195 2.3e-15 87.0 98 48.0
Rhsim01G0126200 Rhododendron simsii HOM05D000023 ORTHO05D000014 3.0e-15 86.7 83 51.8
FvH4_3g29752 Fragaria vesca HOM05D000023 ORTHO05D009195 1.6e-13 80.9 86 50.0
Rhsim09G0032000 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.1e-13 80.5 83 48.2
Rhsim08G0134200 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.8e-13 80.1 76 53.9
FvH4_2g24751 Fragaria vesca HOM05D000023 ORTHO05D009195 4.8e-13 79.3 68 55.9
BraA07t27801Z Brassica rapa HOM05D000023 ORTHO05D000014 6.2e-13 79.0 91 46.2
Rhsim06G0070600 Rhododendron simsii HOM05D000023 ORTHO05D000014 6.2e-13 79.0 83 48.2
RcHm_v2.0_Chr1g0314441 Rosa chinensis HOM05D000023 ORTHO05D000014 6.2e-13 79.0 88 47.7
A07p10130 Brassica napus HOM05D000023 ORTHO05D000014 8.1e-13 78.6 91 46.2
BraA07t28806Z Brassica rapa HOM05D000023 ORTHO05D000014 8.1e-13 78.6 91 46.2
FvH4_6g28273 Fragaria vesca HOM05D000023 ORTHO05D009195 8.1e-13 78.6 96 49.0
Rhsim01G0206700 Rhododendron simsii HOM05D000023 ORTHO05D000014 8.1e-13 78.6 97 42.3
RcHm_v2.0_Chr6g0251571 Rosa chinensis HOM05D000023 ORTHO05D000014 8.1e-13 78.6 88 46.6
Rhsim07G0175200 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.1e-12 78.2 96 44.8
BolC6t35411H Brassica oleracea HOM05D000023 ORTHO05D000014 1.4e-12 77.8 104 44.2
C08p10210 Brassica napus HOM05D000023 ORTHO05D009195 3.1e-12 76.6 76 50.0
BolC3t19320H Brassica oleracea HOM05D000023 ORTHO05D000014 3.1e-12 76.6 104 47.1
BraA03t15324Z Brassica rapa HOM05D000023 ORTHO05D009195 3.1e-12 76.6 80 51.2
Rhsim05G0053400 Rhododendron simsii HOM05D000023 ORTHO05D009195 3.1e-12 76.6 97 41.2
BraA05t19791Z Brassica rapa HOM05D000023 ORTHO05D000014 4.0e-12 76.3 104 44.2
AL2G10350 Arabidopsis lyrata HOM05D001159 ORTHO05D009195 5.3e-12 75.9 100 50.0
BolC9t58958H Brassica oleracea HOM05D000023 ORTHO05D000014 5.3e-12 75.9 104 44.2
Thhalv10026863m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 5.3e-12 75.9 105 44.8
BolC2t11716H Brassica oleracea HOM05D000023 ORTHO05D000014 6.9e-12 75.5 107 43.0
C01p38830 Brassica napus HOM05D000023 ORTHO05D009195 9.0e-12 75.1 80 50.0
BolC1t03838H Brassica oleracea HOM05D000023 ORTHO05D009195 9.0e-12 75.1 80 50.0
Rhsim01G0081000 Rhododendron simsii HOM05D000023 ORTHO05D000014 9.0e-12 75.1 83 44.6
Rhsim03G0092200 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.2e-11 74.7 97 40.2
Rhsim09G0063600 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.2e-11 74.7 97 40.2
Rhsim13G0106300 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.2e-11 74.7 97 40.2
Rhsim13G0148100 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.2e-11 74.7 97 40.2
Atru.chr10.1210 Acer truncatum HOM05D000023 ORTHO05D009195 2.0e-11 73.9 84 48.8
Rhsim10G0121900 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.0e-11 73.9 83 43.4
Atru.chr1.1880 Acer truncatum HOM05D000023 ORTHO05D000014 2.6e-11 73.6 75 50.7
Atru.chr12.1929 Acer truncatum HOM05D000023 ORTHO05D000014 2.6e-11 73.6 75 50.7
Atru.chr12.1937 Acer truncatum HOM05D000023 ORTHO05D000014 2.6e-11 73.6 75 50.7
ECA234G0550 Erigeron canadensis HOM05D000023 ORTHO05D000014 4.4e-11 72.8 76 44.7
Rhsim05G0190500 Rhododendron simsii HOM05D000023 ORTHO05D000014 4.4e-11 72.8 83 44.6
Sp3g26510 Schrenkiella parvula HOM05D000023 ORTHO05D000014 7.6e-11 72.0 109 37.6
BolC6t36375H Brassica oleracea HOM05D000023 ORTHO05D000014 1.3e-10 71.2 85 44.7
BolC6t36377H Brassica oleracea HOM05D000023 ORTHO05D009195 1.3e-10 71.2 85 44.7
Sp5g19130 Schrenkiella parvula HOM05D000023 ORTHO05D000014 1.3e-10 71.2 80 45.0
Sp6g14040 Schrenkiella parvula HOM05D000023 ORTHO05D000014 1.3e-10 71.2 103 40.8
Atru.chr8.35 Acer truncatum HOM05D000023 ORTHO05D009195 1.7e-10 70.9 101 40.6
Rhsim03G0126000 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.7e-10 70.9 68 47.1
C06p12270 Brassica napus HOM05D000023 ORTHO05D000014 3.8e-10 69.7 85 44.7
Thhalv10012177m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 3.8e-10 69.7 83 47.0
FvH4_5g39742 Fragaria vesca HOM05D000023 ORTHO05D000014 3.8e-10 69.7 79 45.6
FvH4_4g22271 Fragaria vesca HOM05D000047 ORTHO05D001383 6.4e-10 68.9 79 45.6
Zm00001eb431660 Zea mays HOM05D000023 ORTHO05D000014 6.4e-10 68.9 83 45.8
TWI75G1282 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 8.4e-10 68.6 84 46.4
Thhalv10002303m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 1.1e-09 68.2 84 48.8
Thhalv10023973m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 1.1e-09 68.2 103 44.7
FAN09G4181 Fragaria x ananassa HOM05D000023 ORTHO05D009195 1.1e-09 68.2 56 55.4
TWI38G0131 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 1.1e-09 68.2 84 46.4
AL1G48110 Arabidopsis lyrata HOM05D000023 ORTHO05D000014 1.9e-09 67.4 86 41.9
Thhalv10022981m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 2.4e-09 67.0 95 41.1
Rhsim05G0095800 Rhododendron simsii HOM05D000023 ORTHO05D000014 3.2e-09 66.6 95 40.0
BraA04t15802Z Brassica rapa HOM05D000023 ORTHO05D000014 9.3e-09 65.1 111 36.9
Atru.chr8.31 Acer truncatum HOM05D000023 ORTHO05D000014 1.2e-08 64.7 58 51.7
BolC5t32440H Brassica oleracea HOM05D000023 ORTHO05D009195 1.2e-08 64.7 75 44.0
Sp6g08560 Schrenkiella parvula HOM05D000023 ORTHO05D000014 3.5e-08 63.2 103 39.8
Rhsim04G0137200 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.0e-07 61.6 80 45.0
RhsimUnG0234800 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.0e-07 61.6 80 45.0
C05p36940 Brassica napus HOM05D000023 ORTHO05D009195 1.7e-07 60.8 75 42.7
HanXRQChr12g0373131 Helianthus annuus HOM05D000023 ORTHO05D009195 2.3e-07 60.5 86 38.4
Rhsim02G0038300 Rhododendron simsii HOM05D000023 ORTHO05D000014 5.1e-07 59.3 80 43.8
Rhsim02G0219500 Rhododendron simsii HOM05D000023 ORTHO05D000014 5.1e-07 59.3 80 43.8
RhsimUnG0127700 Rhododendron simsii HOM05D000023 ORTHO05D000014 5.1e-07 59.3 80 43.8
Ah.09g225470 Amaranthus hybridus HOM05D008981 ORTHO05D009195 8.7e-07 58.5 85 40.0
BraA05t21268Z Brassica rapa HOM05D000023 ORTHO05D009195 8.7e-07 58.5 100 35.0
Rhsim05G0096600 Rhododendron simsii HOM05D000023 ORTHO05D000014 8.7e-07 58.5 80 43.8
C03p79510 Brassica napus HOM05D000023 ORTHO05D009195 1.1e-06 58.2 100 35.0
COL.COLO4_12086 Corchorus olitorius HOM05D008981 ORTHO05D009195 1.9e-06 57.4 91 39.6
COL.COLO4_33410 Corchorus olitorius HOM05D008981 ORTHO05D009195 1.9e-06 57.4 91 39.6
Hund19738 Selenicereus undatus HOM05D000023 ORTHO05D003407 1.9e-06 57.4 84 45.2
Ah.13g070180 Amaranthus hybridus HOM05D008981 ORTHO05D009195 2.5e-06 57.0 95 36.8
Hund17894 Selenicereus undatus HOM05D000023 ORTHO05D000014 3.3e-06 56.6 59 42.4
Cc03_g13100 Coffea canephora HOM05D018247 ORTHO05D009195 9.6e-06 55.1 74 43.2


User provided reference genes

Program Settings