Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 1.6e-129 466.1 233 100.0
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.6e-129 466.1 233 100.0
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 4.7e-129 464.5 233 99.6
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 4.7e-129 464.5 233 99.1
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.0e-129 463.8 233 99.1
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.0e-129 463.8 233 99.1
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 4.8e-126 454.5 237 96.6
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 1.1e-125 453.4 235 97.0
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 4.1e-117 424.9 233 88.4
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 9.1e-117 423.7 234 89.7
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 2.9e-115 418.7 231 88.3
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 6.5e-115 417.5 234 88.0
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 1.5e-114 416.4 231 88.3
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 5.5e-114 414.5 233 86.7
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 1.2e-113 413.3 239 85.8
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 1.2e-113 413.3 231 87.4
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 1.6e-113 412.9 231 87.0
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 1.6e-113 412.9 236 86.0
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 1.4e-112 409.8 221 90.5
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 3.0e-112 408.7 233 86.3
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 4.0e-112 408.3 233 86.3
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 5.2e-112 407.9 226 88.9
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 8.8e-112 407.1 231 85.7
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 2.6e-111 405.6 233 86.3
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 3.4e-111 405.2 233 84.5
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 9.8e-111 403.7 235 85.1
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 9.8e-111 403.7 224 87.9
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 1.3e-110 403.3 233 84.5
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.7e-110 402.9 234 86.3
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.7e-110 402.9 233 85.0
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 2.2e-110 402.5 236 84.3
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 2.2e-110 402.5 226 87.6
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 3.7e-110 401.7 221 88.7
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 4.9e-110 401.4 238 84.0
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 6.3e-110 401.0 231 84.4
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 8.3e-110 400.6 224 87.1
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 1.4e-109 399.8 232 84.5
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 1.4e-109 399.8 233 82.0
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 1.4e-109 399.8 227 86.3
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 1.8e-109 399.4 226 86.7
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 3.1e-109 398.7 222 87.4
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 4.1e-109 398.3 226 86.7
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 7.0e-109 397.5 224 85.7
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 1.6e-108 396.4 224 85.3
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 4.5e-108 394.8 224 84.8
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 4.5e-108 394.8 224 84.8
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 7.8e-108 394.0 233 83.3
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 1.0e-107 393.7 224 85.3
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 2.3e-107 392.5 231 84.0
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 3.8e-107 391.7 233 81.5
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 5.0e-107 391.3 226 84.1
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 1.5e-106 389.8 235 80.9
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 1.9e-106 389.4 234 81.6
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 1.9e-106 389.4 233 82.4
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 1.9e-106 389.4 237 81.9
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 1.2e-105 386.7 227 82.8
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 2.1e-105 386.0 231 82.3
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 2.8e-105 385.6 222 82.9
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 2.8e-105 385.6 233 80.3
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 3.6e-105 385.2 222 83.8
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 6.1e-105 384.4 233 80.3
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 8.0e-105 384.0 233 80.7
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 1.0e-104 383.6 223 83.4
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 1.8e-104 382.9 224 81.7
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 2.3e-104 382.5 226 82.3
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 3.0e-104 382.1 225 84.0
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 4.0e-104 381.7 221 84.2
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 6.8e-104 380.9 224 83.5
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 1.2e-103 380.2 222 82.9
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 1.2e-103 380.2 233 79.4
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 1.5e-103 379.8 226 82.3
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 1.5e-103 379.8 225 83.1
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 2.0e-103 379.4 226 80.5
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 2.0e-103 379.4 226 80.5
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 2.0e-103 379.4 226 80.5
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 3.4e-103 378.6 226 81.4
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 3.4e-103 378.6 236 79.7
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 4.4e-103 378.3 226 82.3
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 4.4e-103 378.3 224 82.6
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 5.7e-103 377.9 222 82.0
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 9.8e-103 377.1 226 79.6
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 9.8e-103 377.1 226 81.9
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 9.8e-103 377.1 226 79.6
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 1.3e-102 376.7 233 80.3
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 2.2e-102 375.9 227 80.6
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 2.2e-102 375.9 233 79.0
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 2.2e-102 375.9 226 80.5
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 3.7e-102 375.2 226 81.4
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 4.9e-102 374.8 227 80.2
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 6.4e-102 374.4 227 80.6
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 1.1e-101 373.6 233 77.7
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 1.4e-101 373.2 224 83.0
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 3.2e-101 372.1 238 78.6
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 7.0e-101 370.9 227 79.3
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 2.0e-100 369.4 226 79.6
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 2.0e-100 369.4 224 80.8
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 3.5e-100 368.6 233 77.3
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 3.5e-100 368.6 220 80.9
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 7.8e-100 367.5 226 80.1
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 1.7e-99 366.3 222 80.2
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 2.3e-99 365.9 233 79.8
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 3.0e-99 365.5 234 76.5
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 5.0e-99 364.8 225 81.3
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 1.1e-98 363.6 224 79.0
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 3.3e-98 362.1 304 62.8
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 3.6e-97 358.6 268 68.3
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 4.4e-95 351.7 318 60.7
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 6.4e-94 347.8 187 90.9
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 6.4e-94 347.8 224 75.4
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 1.4e-93 346.7 220 80.5
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 3.5e-92 342.0 224 77.2
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 3.5e-92 342.0 227 71.4
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 1.5e-90 336.7 224 74.6
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 2.1e-89 332.8 226 72.6
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 2.1e-89 332.8 224 73.7
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 1.4e-88 330.1 226 71.2
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 1.2e-87 327.0 226 68.6
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 2.6e-87 325.9 231 68.4
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 9.8e-87 323.9 198 80.3
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 3.7e-86 322.0 187 82.9
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 4.9e-86 321.6 224 67.4
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 8.3e-86 320.9 192 80.7
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 5.6e-82 308.1 198 77.3
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 7.3e-82 307.8 238 68.9
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 1.2e-73 280.4 197 70.6
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 1.8e-72 276.6 168 78.6
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 7.1e-69 264.6 230 62.2
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 7.8e-68 261.2 154 83.1
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 1.6e-57 226.9 157 67.5
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 2.2e-54 216.5 218 50.9
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 1.9e-45 186.8 119 73.1
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 4.5e-39 165.6 92 88.0
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 2.2e-38 163.3 201 39.8
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 2.8e-33 146.4 97 80.4
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 1.4e-24 117.5 209 33.0
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 1.3e-09 67.8 74 43.2


User provided reference genes

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