Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 1.6e-192 676.0 359 100.0
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 2.4e-169 599.0 359 90.5
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 5.4e-169 597.8 359 90.3
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 1.5e-155 553.1 351 82.3
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 1.7e-154 549.7 359 83.0
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 2.1e-152 542.7 359 82.5
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 6.7e-151 537.7 353 79.6
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 1.5e-150 536.6 343 81.9
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 8.2e-149 530.8 351 79.2
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 1.8e-148 529.6 358 78.5
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 2.9e-146 522.3 351 77.5
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 3.2e-145 518.8 358 77.7
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 5.5e-145 518.1 353 78.2
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 1.6e-144 516.5 353 77.9
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 3.6e-144 515.4 354 78.0
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 1.0e-143 513.8 351 76.4
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 8.8e-143 510.8 355 77.7
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 8.8e-143 510.8 323 83.9
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 3.3e-142 508.8 336 79.5
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 5.7e-142 508.1 351 77.2
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.7e-141 506.5 354 76.8
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 1.7e-141 506.5 344 77.6
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 1.7e-141 506.5 343 77.6
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 1.4e-140 503.4 351 75.8
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.2e-139 500.4 352 75.3
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 2.0e-139 499.6 354 76.3
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 4.5e-139 498.4 359 78.0
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 5.9e-139 498.0 336 77.4
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.0e-138 497.3 359 75.5
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 5.0e-138 495.0 355 75.2
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 8.5e-138 494.2 355 75.5
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 2.5e-137 492.7 338 77.5
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 1.2e-136 490.3 352 76.1
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 6.1e-136 488.0 345 75.9
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 6.1e-136 488.0 359 73.5
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 7.9e-136 487.6 389 71.0
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 2.0e-134 483.0 356 73.3
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 2.0e-134 483.0 343 73.5
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 2.6e-134 482.6 343 73.8
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 4.4e-134 481.9 336 75.9
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 7.4e-134 481.1 346 70.5
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 7.4e-134 481.1 437 62.9
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 7.4e-134 481.1 353 72.5
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 9.7e-134 480.7 356 73.3
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 2.2e-133 479.6 346 70.2
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 2.8e-133 479.2 341 75.4
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 2.8e-133 479.2 341 75.4
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 3.7e-133 478.8 330 78.2
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 3.7e-133 478.8 349 74.2
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 1.1e-132 477.2 340 73.5
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 2.4e-132 476.1 332 76.8
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 3.1e-132 475.7 338 74.3
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 3.1e-132 475.7 321 76.3
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 5.3e-132 474.9 348 74.4
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 7.0e-132 474.6 357 72.5
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 1.2e-131 473.8 353 73.1
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 2.6e-131 472.6 352 72.4
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 4.5e-131 471.9 358 72.1
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 4.5e-131 471.9 349 72.2
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 2.2e-130 469.5 349 71.9
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 2.2e-130 469.5 349 71.9
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 2.9e-130 469.2 349 71.6
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 2.9e-130 469.2 344 71.5
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 5.0e-130 468.4 349 71.1
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 8.5e-130 467.6 349 71.3
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.4e-129 466.8 349 71.6
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 1.4e-129 466.8 358 71.2
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 2.1e-128 463.0 355 71.0
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 3.6e-128 462.2 351 71.5
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 1.0e-127 460.7 346 70.5
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 1.0e-127 460.7 352 71.6
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 3.0e-127 459.1 332 73.5
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 5.2e-127 458.4 368 67.7
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 3.3e-126 455.7 344 68.6
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 3.3e-126 455.7 347 68.9
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 4.4e-126 455.3 341 72.4
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 4.4e-126 455.3 350 70.0
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 5.7e-126 454.9 350 70.0
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 1.3e-125 453.8 301 79.1
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.1e-124 450.7 337 71.8
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 1.4e-124 450.3 351 70.4
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 1.3e-122 443.7 348 68.1
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 3.8e-122 442.2 302 74.5
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 7.2e-121 438.0 299 78.9
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 4.7e-120 435.3 325 70.8
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 1.0e-119 434.1 356 64.0
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 2.3e-119 433.0 318 73.3
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 6.7e-119 431.4 385 66.5
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 3.3e-118 429.1 334 66.5
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 1.3e-117 427.2 280 78.6
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 4.8e-117 425.2 347 67.4
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 7.2e-113 411.4 301 73.4
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 4.7e-112 408.7 298 73.2
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 6.1e-112 408.3 251 89.6
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 1.2e-110 404.1 318 67.9
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 1.7e-109 400.2 275 79.6
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 2.2e-109 399.8 357 64.1
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 2.8e-109 399.4 336 66.1
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 2.8e-109 399.4 413 58.8
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 7.0e-108 394.8 348 63.5
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 1.7e-106 390.2 332 64.8
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.1e-105 387.5 302 69.2
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 3.3e-105 386.0 438 53.4
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 8.9e-103 377.9 295 70.8
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 9.2e-100 367.9 393 58.3
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 8.6e-98 361.3 401 53.9
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 1.9e-97 360.1 245 75.1
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.2e-96 357.5 334 58.7
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 2.1e-96 356.7 226 79.6
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 6.1e-96 355.1 336 57.4
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 7.0e-92 341.7 268 69.0
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.2e-91 340.9 405 53.6
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 1.0e-90 337.8 261 71.6
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 1.6e-88 330.5 231 74.5
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 9.8e-86 321.2 244 71.3
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 2.8e-80 303.1 277 63.2
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 2.6e-78 296.6 304 56.2
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 1.1e-73 281.2 200 71.5
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.1e-73 281.2 332 48.8
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 7.3e-73 278.5 324 48.8
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 2.8e-72 276.6 181 81.8
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 4.7e-72 275.8 220 65.5
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 2.4e-71 273.5 227 62.6
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 3.3e-65 253.1 327 44.6
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 2.4e-63 246.9 150 82.7
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 2.6e-54 216.9 144 84.0
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 2.7e-51 206.8 148 68.9
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 8.7e-50 201.8 206 56.8
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 3.7e-48 196.4 170 66.5
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.6e-40 171.0 127 70.1
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 1.7e-37 161.0 337 35.0
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 1.4e-36 157.9 104 84.6
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 7.9e-35 152.1 97 84.5
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.9e-33 147.5 128 71.1
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.3e-24 118.2 167 46.7
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 1.8e-23 114.4 83 75.9
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 9.1e-23 112.1 111 63.1
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 4.5e-22 109.8 224 33.9
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 2.6e-17 94.0 102 48.0
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 1.4e-15 88.2 50 84.0
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 1.8e-15 87.8 52 88.5
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 5.3e-15 86.3 57 78.9
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 2.0e-14 84.3 78 57.7
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 2.0e-14 84.3 53 83.0
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 6.5e-13 79.3 68 58.8
FvH4_1g08700 Fragaria vesca HOM05D000069 ORTHO05D021424 5.5e-12 76.3 44 90.9
CAN.G2458.1 Capsicum annuum HOM05D002335 ORTHO05D006282 3.7e-08 63.5 74 52.7
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 1.1e-07 62.0 57 50.9
arahy.Tifrunner.gnm1.ann1.Y6L4BT Arachis hypogaea HOM05D000237 ORTHO05D017465 5.9e-06 56.2 72 41.7
FAN23G2278 Fragaria x ananassa HOM05D002335 ORTHO05D200751 7.7e-06 55.8 32 90.6


User provided reference genes

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