Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 0.0e+00 1434.9 695 100.0
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1408.7 714 96.2
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1362.8 692 94.9
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1361.3 692 94.8
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1350.5 692 93.8
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1211.4 694 82.7
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1178.7 693 80.4
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1102.0 691 75.3
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1100.9 691 75.4
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1097.4 692 75.3
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1090.5 691 74.2
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1090.1 691 74.7
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1086.2 691 74.1
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1084.7 691 74.4
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1080.1 691 74.8
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1078.2 691 73.5
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 4.8e-312 1074.3 691 73.5
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 9.5e-312 1073.2 691 72.6
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 2.4e-311 1071.6 692 73.8
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 3.3e-311 1071.2 691 72.8
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 1.6e-310 1068.9 691 73.5
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 3.6e-310 1067.8 691 73.2
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 3.6e-310 1067.8 691 73.1
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 1.0e-309 1066.2 691 73.5
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 3.0e-309 1064.7 691 73.2
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 4.0e-309 1064.3 691 73.1
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 4.0e-309 1064.3 691 71.9
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 6.8e-309 1063.5 691 72.6
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 8.9e-309 1063.1 692 72.7
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 1.2e-308 1062.8 692 72.8
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 2.0e-308 1062.0 691 72.6
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 2.0e-308 1062.0 692 72.4
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 4.4e-308 1060.8 691 72.4
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 2.2e-307 1058.5 691 72.9
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 4.9e-307 1057.4 692 72.4
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 2.4e-306 1055.0 691 71.6
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 5.4e-306 1053.9 691 72.5
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 7.0e-306 1053.5 691 73.4
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 2.0e-305 1052.0 691 71.6
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 2.7e-305 1051.6 691 72.5
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 5.9e-305 1050.4 703 71.1
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 1.0e-304 1049.7 693 71.0
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 2.3e-304 1048.5 691 71.3
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 2.3e-304 1048.5 691 72.4
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 4.3e-303 1044.3 694 72.0
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 5.6e-303 1043.9 690 70.7
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 3.6e-302 1041.2 689 71.4
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 6.1e-302 1040.4 691 71.3
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 1.4e-301 1039.3 691 71.2
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 2.3e-301 1038.5 691 70.9
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 3.1e-301 1038.1 691 71.1
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 4.0e-301 1037.7 691 72.1
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 5.2e-301 1037.3 645 76.3
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 8.9e-301 1036.6 691 70.2
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 3.4e-300 1034.6 683 71.2
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 7.5e-300 1033.5 691 70.6
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 7.5e-300 1033.5 691 70.6
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 3.7e-299 1031.2 690 70.7
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 1.9e-298 1028.9 691 69.9
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 2.4e-298 1028.5 690 70.3
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 3.2e-298 1028.1 692 71.4
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 2.0e-297 1025.4 690 70.4
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 3.5e-297 1024.6 710 68.2
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 4.6e-297 1024.2 691 69.3
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 6.0e-297 1023.8 687 70.5
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 1.7e-296 1022.3 691 69.8
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 1.7e-296 1022.3 693 69.3
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 2.3e-296 1021.9 691 69.8
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 2.3e-296 1021.9 691 70.2
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 5.0e-296 1020.8 691 70.3
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 1.1e-295 1019.6 691 70.3
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 1.1e-295 1019.6 692 71.0
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 1.9e-295 1018.8 691 69.3
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 1.9e-295 1018.8 691 69.8
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 4.3e-295 1017.7 692 69.7
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 5.6e-295 1017.3 691 69.6
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 1.2e-294 1016.1 691 69.5
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 1.2e-294 1016.1 691 69.3
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 4.7e-294 1014.2 693 69.7
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 4.7e-294 1014.2 691 70.5
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 1.4e-293 1012.7 691 68.9
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 2.3e-293 1011.9 695 68.9
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 2.3e-293 1011.9 691 68.9
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 1.7e-291 1005.7 692 67.9
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 4.9e-291 1004.2 692 67.9
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 6.4e-291 1003.8 703 67.7
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 4.1e-290 1001.1 691 69.2
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 7.1e-290 1000.3 691 67.7
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 7.1e-290 1000.3 691 69.5
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 2.7e-289 998.4 692 67.9
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.1e-285 986.5 691 66.4
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 4.9e-283 977.6 691 68.0
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 3.0e-272 941.8 691 64.5
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 1.9e-263 912.5 675 65.0
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 1.3e-262 909.8 566 76.7
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 1.0e-243 847.0 693 56.7
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 3.2e-242 842.0 644 65.2
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 5.5e-242 841.3 688 60.9
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 7.4e-239 830.9 696 57.9
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 2.4e-237 825.9 694 57.2
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 3.3e-231 805.4 695 55.3
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.9e-194 683.3 698 48.6
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 6.2e-161 572.0 388 70.4
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 7.2e-125 452.2 380 56.6
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 4.4e-98 363.2 188 95.2
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 4.1e-96 356.7 302 59.3
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 6.1e-76 289.7 227 63.9
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 1.0e-70 272.3 204 63.7
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.0e-67 262.3 168 73.2
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 7.3e-53 213.0 175 63.4
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 7.8e-39 166.4 197 48.2
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 3.0e-38 164.5 216 43.1
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.1e-30 137.1 85 76.5
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 8.7e-30 136.3 149 48.3
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 4.3e-29 134.0 87 78.2
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.2e-26 125.9 80 76.2
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 1.3e-25 122.5 69 84.1
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 1.1e-24 119.4 90 66.7
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 2.2e-17 95.1 103 46.6
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 7.4e-13 80.1 197 24.9
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 1.6e-12 79.0 315 24.1
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 9.0e-11 73.2 251 23.9
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.4e-10 71.2 329 22.2
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 7.6e-10 70.1 310 21.6
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 2.2e-09 68.6 350 23.4
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 6.5e-09 67.0 304 27.3
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 8.5e-09 66.6 33 87.9
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.1e-08 66.2 204 25.0
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.4e-08 65.9 313 23.0
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 5.5e-08 63.9 297 22.9
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.6e-07 61.2 283 21.9
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 3.6e-07 61.2 65 47.7
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 6.1e-07 60.5 233 23.6
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.3e-06 58.5 147 26.5
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 3.9e-06 57.8 220 27.3
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.7e-06 56.6 213 23.5


User provided reference genes

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