Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 1.4e-121 439.5 210 100.0
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.2e-117 425.6 231 90.5
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.8e-116 422.5 210 96.2
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.1e-116 421.4 210 96.7
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.0e-111 405.2 252 81.0
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.0e-111 404.8 252 80.6
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 5.2e-103 377.9 211 89.6
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 1.0e-90 337.0 210 77.1
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 2.3e-87 325.9 187 79.1
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 6.8e-87 324.3 184 78.3
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 8.9e-87 323.9 185 79.5
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 2.0e-86 322.8 185 78.9
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 6.4e-85 317.8 209 72.7
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 8.3e-85 317.4 185 78.9
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.1e-84 317.0 183 78.7
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 5.4e-84 314.7 183 77.6
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 5.4e-84 314.7 183 77.0
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 7.0e-84 314.3 185 76.8
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 2.0e-83 312.8 189 74.1
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 2.7e-83 312.4 183 76.5
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 7.8e-83 310.8 182 78.6
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 7.8e-83 310.8 182 76.9
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 1.0e-82 310.5 182 78.6
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 1.3e-82 310.1 178 79.8
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 1.3e-82 310.1 186 74.7
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.7e-82 309.7 183 75.4
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.7e-82 309.7 183 75.4
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 1.7e-82 309.7 181 76.8
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 2.3e-82 309.3 182 78.0
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 2.3e-82 309.3 182 77.5
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 3.0e-82 308.9 178 79.8
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 3.0e-82 308.9 186 74.2
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 3.9e-82 308.5 186 74.2
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 5.0e-82 308.1 186 74.7
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 6.6e-82 307.8 182 75.8
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 8.6e-82 307.4 178 79.2
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 8.6e-82 307.4 178 79.2
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 1.1e-81 307.0 182 76.9
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 1.1e-81 307.0 182 76.4
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.1e-81 307.0 177 77.4
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 1.1e-81 307.0 181 76.2
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 1.5e-81 306.6 180 76.1
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 3.3e-81 305.4 200 70.5
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 3.3e-81 305.4 177 77.4
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 4.3e-81 305.1 183 73.2
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 5.6e-81 304.7 182 76.4
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 5.6e-81 304.7 188 73.9
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 7.3e-81 304.3 182 75.8
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.2e-80 303.5 183 73.8
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 1.6e-80 303.1 184 75.0
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.1e-80 302.8 185 73.0
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.1e-80 302.8 182 74.2
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 2.8e-80 302.4 183 73.2
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 2.8e-80 302.4 185 74.1
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 2.8e-80 302.4 185 74.1
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 4.7e-80 301.6 185 74.1
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 4.7e-80 301.6 176 76.7
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.0e-80 300.8 185 73.0
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.1e-79 300.4 189 73.0
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.4e-79 300.1 182 74.2
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 1.4e-79 300.1 196 70.4
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.4e-79 300.1 185 72.4
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.4e-79 300.1 185 72.4
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 1.8e-79 299.7 176 74.4
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 2.3e-79 299.3 185 72.4
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 3.1e-79 298.9 188 72.9
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 6.8e-79 297.7 183 73.8
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 8.9e-79 297.4 183 71.6
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 8.9e-79 297.4 186 70.4
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 8.9e-79 297.4 186 70.4
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 8.9e-79 297.4 179 73.2
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.2e-78 297.0 187 68.4
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 2.6e-78 295.8 185 70.3
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 2.6e-78 295.8 179 72.6
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 2.6e-78 295.8 188 71.8
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 4.4e-78 295.0 185 71.4
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 4.4e-78 295.0 179 71.5
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 4.4e-78 295.0 175 74.3
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 7.5e-78 294.3 182 70.9
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 2.2e-77 292.7 189 69.8
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 2.9e-77 292.4 175 72.0
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 2.9e-77 292.4 175 73.1
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.9e-77 292.4 183 72.1
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.9e-77 291.6 185 70.8
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 1.1e-76 290.4 179 71.5
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 1.4e-76 290.0 198 67.2
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 1.4e-76 290.0 175 73.7
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 4.1e-76 288.5 189 68.8
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.2e-75 287.0 199 66.3
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 2.7e-75 285.8 178 68.0
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 7.8e-75 284.3 241 56.8
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 2.3e-74 282.7 182 69.2
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 9.5e-73 277.3 168 71.4
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 2.6e-70 269.2 154 76.0
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.4e-70 268.5 164 73.2
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 5.8e-70 268.1 189 66.1
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 7.5e-70 267.7 153 76.5
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 4.9e-69 265.0 154 77.3
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.4e-68 262.7 176 66.5
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 9.2e-68 260.8 151 76.8
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 9.2e-68 260.8 184 63.0
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 2.7e-67 259.2 163 72.4
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.3e-66 256.9 151 73.5
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 1.3e-66 256.9 180 62.8
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 3.3e-65 252.3 181 66.3
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 7.3e-65 251.1 181 61.3
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 7.3e-65 251.1 155 72.9
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 1.6e-64 250.0 149 71.8
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.6e-64 250.0 175 64.0
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.6e-64 250.0 175 64.0
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 2.1e-64 249.6 181 67.4
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 8.1e-64 247.7 162 70.4
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 2.2e-61 239.6 186 60.8
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 4.9e-61 238.4 146 71.9
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 6.4e-61 238.0 299 44.5
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 6.4e-61 238.0 148 70.3
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.1e-60 237.3 209 54.1
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 1.3e-58 230.3 141 71.6
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 3.9e-58 228.8 176 61.4
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 1.6e-51 206.8 182 53.3
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 2.7e-51 206.1 176 57.4
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 4.6e-51 205.3 194 53.6
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 4.6e-51 205.3 179 51.4
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.7e-50 201.1 120 74.2
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.1e-49 200.7 177 53.7
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 3.8e-45 185.7 208 46.6
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 2.3e-42 176.4 198 46.0
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.5e-41 173.7 172 44.8
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.5e-41 173.7 172 44.8
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 7.4e-41 171.4 91 80.2
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 5.8e-38 161.8 120 60.0
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.8e-37 159.1 90 75.6
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 5.5e-36 155.2 203 38.9
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.6e-35 153.7 184 46.7
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 3.5e-35 152.5 178 39.3
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.9e-35 151.4 145 52.4
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 3.0e-34 149.4 178 42.7
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.5e-33 147.1 180 37.8
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 7.4e-33 144.8 161 46.0
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.1e-32 143.3 149 49.7
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 2.2e-29 133.3 92 63.0
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 9.7e-25 117.9 90 58.9
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 1.8e-10 70.5 46 60.9
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 1.1e-09 67.8 69 46.4
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.2e-06 57.8 43 58.1


User provided reference genes

Program Settings