Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 1.8e-221 772.3 406 100.0
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 3.4e-220 768.1 406 99.8
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.0e-211 740.0 406 96.3
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 8.8e-208 726.9 406 95.1
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.7e-206 722.6 406 94.1
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.7e-206 722.6 404 94.3
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 5.7e-191 671.0 392 90.1
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 1.4e-176 623.2 401 83.5
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 4.0e-176 621.7 388 85.3
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 1.5e-175 619.8 401 83.5
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 4.9e-166 588.2 358 85.8
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 6.4e-166 587.8 389 79.4
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 2.4e-165 585.9 379 81.5
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 1.6e-164 583.2 366 83.3
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 3.0e-163 578.9 389 78.9
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 6.6e-163 577.8 373 81.8
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 1.9e-162 576.2 359 78.6
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 1.9e-162 576.2 347 85.6
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 1.9e-162 576.2 347 85.6
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 2.5e-162 575.9 383 79.1
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 1.2e-161 573.5 393 78.1
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.1e-161 572.8 393 74.8
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 2.8e-161 572.4 375 80.0
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.8e-161 572.4 393 74.8
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 4.7e-161 571.6 407 76.2
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 4.7e-161 571.6 386 79.5
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 6.2e-161 571.2 364 82.7
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 1.1e-160 570.5 383 78.6
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.4e-160 570.1 347 85.3
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 1.4e-160 570.1 354 83.1
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.8e-160 569.7 352 80.7
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 3.1e-160 568.9 369 79.9
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 6.8e-160 567.8 369 79.9
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 8.9e-160 567.4 356 83.1
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 1.2e-159 567.0 402 71.4
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 1.5e-159 566.6 360 81.7
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.5e-159 566.6 359 81.3
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 1.5e-159 566.6 388 78.9
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 3.4e-159 565.5 377 75.1
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 4.4e-159 565.1 363 82.1
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 5.8e-159 564.7 374 76.2
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 1.3e-158 563.5 373 80.4
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.3e-158 563.5 369 76.7
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 1.3e-158 563.5 362 82.0
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 1.7e-158 563.1 370 80.5
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 1.7e-158 563.1 381 74.8
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 2.2e-158 562.8 347 83.6
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 3.7e-158 562.0 368 79.9
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 4.9e-158 561.6 378 78.3
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 6.4e-158 561.2 369 76.2
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 8.3e-158 560.8 396 76.5
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 8.3e-158 560.8 396 76.5
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 1.1e-157 560.5 378 79.4
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 1.1e-157 560.5 419 72.3
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 1.9e-157 559.7 361 78.1
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 2.4e-157 559.3 405 73.3
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 2.4e-157 559.3 368 76.4
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 2.4e-157 559.3 388 77.3
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 3.2e-157 558.9 382 78.5
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 4.1e-157 558.5 377 79.6
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 4.1e-157 558.5 378 78.8
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 7.1e-157 557.8 352 81.0
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 7.1e-157 557.8 372 78.2
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 1.2e-156 557.0 362 80.9
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 1.6e-156 556.6 368 80.4
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.7e-156 555.8 374 74.3
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 7.8e-156 554.3 395 72.4
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 1.7e-155 553.1 361 77.0
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 3.0e-155 552.4 369 77.0
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 5.1e-155 551.6 362 78.7
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 6.6e-155 551.2 391 74.7
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 1.5e-154 550.1 368 79.9
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 1.5e-154 550.1 397 75.3
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 1.9e-154 549.7 368 78.3
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 1.9e-154 549.7 370 78.1
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 1.9e-154 549.7 345 80.9
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 2.5e-154 549.3 361 78.1
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 3.3e-154 548.9 374 73.5
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 5.6e-154 548.1 356 78.4
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 7.3e-154 547.7 373 78.3
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 7.3e-154 547.7 383 72.3
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 9.5e-154 547.4 338 81.1
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 1.2e-153 547.0 373 73.5
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 1.6e-153 546.6 373 73.2
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.1e-153 546.2 374 73.3
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 3.6e-153 545.4 397 74.8
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 3.6e-153 545.4 397 74.8
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.1e-152 543.9 351 77.8
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.4e-152 543.5 360 79.2
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 4.0e-152 542.0 415 70.6
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 5.2e-152 541.6 396 75.0
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.2e-151 540.4 357 77.9
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 1.5e-151 540.0 357 77.9
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 9.9e-151 537.3 358 77.9
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 1.3e-150 537.0 404 68.3
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 1.7e-150 536.6 366 74.9
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 2.2e-150 536.2 327 83.8
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 8.4e-150 534.3 382 75.1
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 8.4e-150 534.3 395 74.4
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 1.4e-149 533.5 341 78.3
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 3.2e-149 532.3 377 74.3
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 6.0e-148 528.1 356 74.7
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 1.0e-147 527.3 362 72.1
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 2.3e-147 526.2 335 77.6
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 3.9e-147 525.4 363 76.3
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 1.5e-146 523.5 359 74.9
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 2.5e-146 522.7 316 80.1
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 2.5e-146 522.7 353 74.5
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 3.3e-146 522.3 370 76.8
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 7.3e-146 521.2 353 74.5
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 7.3e-146 521.2 341 78.3
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 4.7e-145 518.5 300 82.7
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 6.2e-145 518.1 333 76.6
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 1.8e-144 516.5 485 60.8
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 4.0e-144 515.4 378 69.6
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 6.9e-144 514.6 333 75.7
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 4.4e-143 511.9 389 67.9
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 5.8e-143 511.5 313 79.9
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 7.6e-143 511.1 359 72.7
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 3.2e-141 505.8 378 69.8
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 7.1e-141 504.6 334 74.0
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 5.6e-138 495.0 335 74.3
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 5.6e-138 495.0 374 71.9
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 1.1e-136 490.7 286 82.5
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 4.0e-136 488.8 313 83.7
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 2.6e-135 486.1 289 86.2
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 4.5e-135 485.3 301 83.4
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 2.9e-134 482.6 381 66.9
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 4.9e-134 481.9 344 73.5
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 5.4e-133 478.4 359 71.9
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 7.9e-132 474.6 349 72.5
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 5.1e-131 471.9 386 68.1
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 3.3e-130 469.2 360 69.7
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 1.4e-128 463.8 336 72.6
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 4.5e-127 458.8 264 83.3
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 2.2e-126 456.4 300 71.3
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 1.6e-124 450.3 350 62.6
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.0e-118 431.0 304 66.4
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 8.4e-118 427.9 341 67.4
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.9e-117 426.8 266 78.6
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 3.2e-117 426.0 333 60.7
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 4.6e-116 422.2 345 60.9
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 6.0e-116 421.8 402 57.7
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.9e-114 416.8 300 66.0
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.5e-111 407.1 306 63.7
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 3.6e-108 396.0 361 62.6
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 1.0e-107 394.4 221 86.4
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 2.0e-106 390.2 409 54.3
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 1.9e-101 373.6 240 77.9
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 6.1e-92 342.0 332 53.0
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.1e-85 321.2 211 70.1
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 8.8e-83 311.6 226 74.3
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 1.5e-74 284.3 150 92.7
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 1.3e-65 254.6 375 45.3
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 1.7e-57 227.6 178 60.7
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 8.3e-57 225.3 170 72.4
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 8.9e-43 178.7 164 57.9
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 6.4e-33 146.0 89 80.9
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.6e-28 131.3 299 30.8
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 2.4e-27 127.5 116 59.5
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 1.3e-25 121.7 335 28.7
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 8.7e-22 109.0 65 76.9
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 3.3e-21 107.1 283 28.3
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 4.8e-20 103.2 95 76.8
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 1.4e-19 101.7 76 85.5
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 5.3e-19 99.8 247 34.4
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 2.0e-18 97.8 61 80.3
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 2.0e-18 97.8 61 80.3
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 4.5e-18 96.7 61 80.3
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.7e-17 94.7 377 25.5
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 5.4e-16 89.7 59 72.9
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 3.0e-14 84.0 61 73.8
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 3.4e-10 70.5 108 35.2
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 1.0e-09 68.9 33 97.0
Cpa.g.c48203 Carica papaya HOM05D003970 ORTHO05D004615 1.1e-08 65.5 58 82.8
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 2.1e-07 61.2 41 70.7
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 3.5e-07 60.5 41 68.3
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 6.0e-07 59.7 39 71.8
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 2.3e-06 57.8 49 59.2


User provided reference genes

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