Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g07881 Fragaria vesca HOM05D006186 ORTHO05D009138 4.1e-201 704.5 356 100.0
FAN19G0843 Fragaria x ananassa HOM05D006186 ORTHO05D009138 7.2e-198 693.7 356 98.3
RcHm_v2.0_Chr5g0009421 Rosa chinensis HOM05D006186 ORTHO05D009138 6.8e-63 245.4 331 49.8
FAN24G3195 Fragaria x ananassa HOM05D006186 ORTHO05D009138 3.3e-41 173.3 346 38.7
FvH4_2g06091 Fragaria vesca HOM05D006186 ORTHO05D009138 9.6e-41 171.8 303 41.3
FAN15G1349 Fragaria x ananassa HOM05D006186 ORTHO05D009138 7.8e-35 152.1 319 37.3
RcHm_v2.0_Chr6g0257771 Rosa chinensis HOM05D006186 ORTHO05D009138 3.6e-32 143.3 312 35.6
FvH4_3g02580 Fragaria vesca HOM05D006186 ORTHO05D009138 5.3e-31 139.4 338 33.4
FvH4_3g02591 Fragaria vesca HOM05D006186 ORTHO05D009138 9.0e-31 138.7 336 33.9
FvH4_2g05841 Fragaria vesca HOM05D006186 ORTHO05D009138 3.8e-29 133.3 319 34.5
FAN21G3430 Fragaria x ananassa HOM05D006186 ORTHO05D009138 1.1e-28 131.7 336 33.3
RcHm_v2.0_Chr6g0265451 Rosa chinensis HOM05D006186 ORTHO05D009138 7.1e-28 129.0 369 30.4
MD17G1117300 Malus domestica HOM05D006186 ORTHO05D009138 9.3e-28 128.6 313 35.5
RcHm_v2.0_Chr2g0113181 Rosa chinensis HOM05D006186 ORTHO05D009138 1.2e-27 128.3 394 31.7
FAN10G0716 Fragaria x ananassa HOM05D006186 ORTHO05D009138 2.3e-26 124.0 317 32.5
FAN10G1081 Fragaria x ananassa HOM05D006186 ORTHO05D009138 2.3e-26 124.0 317 32.5
FAN09G3273 Fragaria x ananassa HOM05D006186 ORTHO05D009138 6.7e-26 122.5 328 32.6
FAN10G3894 Fragaria x ananassa HOM05D006186 ORTHO05D009138 1.1e-25 121.7 317 32.5
RcHm_v2.0_Chr1g0360131 Rosa chinensis HOM05D006186 ORTHO05D009138 7.4e-25 119.0 335 31.3
FAN14G1648 Fragaria x ananassa HOM05D006186 ORTHO05D009138 9.6e-25 118.6 328 32.0
Prupe.8G124900 Prunus persica HOM05D006186 ORTHO05D009138 2.1e-24 117.5 298 34.9
RcHm_v2.0_Chr1g0365181 Rosa chinensis HOM05D006186 ORTHO05D009138 2.1e-24 117.5 313 33.9
RcHm_v2.0_Chr1g0365201 Rosa chinensis HOM05D006186 ORTHO05D009138 6.2e-24 115.9 310 34.5
FAN05G1748 Fragaria x ananassa HOM05D006186 ORTHO05D009138 1.8e-23 114.4 329 31.6
Prupe.8G124800 Prunus persica HOM05D006186 ORTHO05D009138 9.0e-23 112.1 212 39.2
FAN20G0553 Fragaria x ananassa HOM05D006186 ORTHO05D009138 1.5e-22 111.3 338 30.8
RcHm_v2.0_Chr6g0265441 Rosa chinensis HOM05D006186 ORTHO05D009138 2.2e-21 107.5 314 29.9
FvH4_7g20111 Fragaria vesca HOM05D006186 ORTHO05D009138 1.1e-20 105.1 338 29.6
FAN06G4575 Fragaria x ananassa HOM05D006186 ORTHO05D009138 2.4e-20 104.0 265 35.5
FAN05G5370 Fragaria x ananassa HOM05D006186 ORTHO05D009138 7.1e-20 102.4 316 32.0
RcHm_v2.0_Chr6g0257421 Rosa chinensis HOM05D006186 ORTHO05D012372 7.1e-20 102.4 314 31.5
MD17G1286200 Malus domestica HOM05D006186 ORTHO05D009138 2.7e-19 100.5 267 33.0
RcHm_v2.0_Chr6g0257131 Rosa chinensis HOM05D006186 ORTHO05D009138 2.7e-19 100.5 338 29.6
FAN28G2526 Fragaria x ananassa HOM05D006186 ORTHO05D009138 3.5e-19 100.1 288 32.6
RcHm_v2.0_Chr6g0257411 Rosa chinensis HOM05D006186 ORTHO05D012372 1.3e-18 98.2 314 30.6
FAN02G0039 Fragaria x ananassa HOM05D006186 ORTHO05D009138 2.3e-18 97.4 319 30.4
FvH4_2g06090 Fragaria vesca HOM05D006186 ORTHO05D009138 8.7e-18 95.5 410 27.8
FvH4_4g33310 Fragaria vesca HOM05D006186 ORTHO05D009138 9.6e-17 92.0 274 30.7
FAN19G0522 Fragaria x ananassa HOM05D006186 ORTHO05D009138 1.3e-16 91.7 311 29.6
RcHm_v2.0_Chr2g0096151 Rosa chinensis HOM05D006186 ORTHO05D009138 1.3e-16 91.7 324 31.5
FAN12G3351 Fragaria x ananassa HOM05D006186 ORTHO05D009138 1.6e-16 91.3 274 30.7
CANSAT80G2918 Cannabis sativa HOM05D000051 ORTHO05D010453 2.8e-16 90.5 357 27.2
RcHm_v2.0_Chr6g0257161 Rosa chinensis HOM05D006186 ORTHO05D009138 4.8e-16 89.7 323 29.7
FvH4_7g20022 Fragaria vesca HOM05D006186 ORTHO05D009138 1.1e-15 88.6 311 29.9
Prupe.3G231800 Prunus persica HOM05D006186 ORTHO05D009138 4.0e-15 86.7 350 27.7
FAN12G0089 Fragaria x ananassa HOM05D011168 ORTHO05D012372 5.3e-15 86.3 344 28.8
MD10G1278600 Malus domestica HOM05D006186 ORTHO05D009138 6.9e-15 85.9 212 37.7
MD09G1117600 Malus domestica HOM05D006186 ORTHO05D009138 9.0e-15 85.5 266 35.7
RcHm_v2.0_Chr1g0354511 Rosa chinensis HOM05D006186 ORTHO05D009138 9.0e-15 85.5 296 29.4
RcHm_v2.0_Chr2g0161931 Rosa chinensis HOM05D006186 ORTHO05D009138 1.2e-14 85.1 296 31.1
FAN09G0139 Fragaria x ananassa HOM05D006186 ORTHO05D009138 2.6e-14 84.0 253 32.8
MD09G1093500 Malus domestica HOM05D006186 ORTHO05D009138 2.6e-14 84.0 345 27.2
FAN17G1298 Fragaria x ananassa HOM05D006186 ORTHO05D009138 4.5e-14 83.2 328 29.0
FvH4_6g44771 Fragaria vesca HOM05D006186 ORTHO05D009138 1.0e-13 82.0 332 28.9
Prupe.8G124700 Prunus persica HOM05D006186 ORTHO05D009138 1.0e-13 82.0 204 32.8
FvH4_1g09331 Fragaria vesca HOM05D006186 ORTHO05D009138 1.7e-13 81.3 325 28.0
FAN14G3517 Fragaria x ananassa HOM05D006186 ORTHO05D009138 1.7e-13 81.3 344 27.6
FAN23G0589 Fragaria x ananassa HOM05D006186 ORTHO05D009138 1.7e-13 81.3 310 29.0
FvH4_4g28370 Fragaria vesca HOM05D006186 ORTHO05D009138 4.9e-13 79.7 247 32.8
CANSAT80G0872 Cannabis sativa HOM05D000051 ORTHO05D010453 8.4e-13 79.0 333 26.4
RcHm_v2.0_Chr6g0265481 Rosa chinensis HOM05D006186 ORTHO05D009138 2.5e-12 77.4 161 36.6
FAN01G0654 Fragaria x ananassa HOM05D006186 ORTHO05D009138 3.2e-12 77.0 269 29.7
CANSAT80G1127 Cannabis sativa HOM05D000051 ORTHO05D010453 1.2e-11 75.1 321 26.8
MD09G1093600 Malus domestica HOM05D006186 ORTHO05D009138 1.6e-11 74.7 353 28.3
FAN02G2153 Fragaria x ananassa HOM05D006186 ORTHO05D009138 2.1e-11 74.3 238 29.8
FAN06G2274 Fragaria x ananassa HOM05D006186 ORTHO05D009138 2.1e-11 74.3 182 34.1
FAN22G1291 Fragaria x ananassa HOM05D006186 ORTHO05D029544 2.7e-11 73.9 300 29.3
FAN24G3186 Fragaria x ananassa HOM05D006186 ORTHO05D009138 7.9e-11 72.4 153 34.6
RcHm_v2.0_Chr4g0442321 Rosa chinensis HOM05D006186 ORTHO05D009138 1.8e-10 71.2 308 29.2
FAN12G0508 Fragaria x ananassa HOM05D006186 ORTHO05D029544 3.9e-10 70.1 305 29.5
FAN15G0536 Fragaria x ananassa HOM05D006186 ORTHO05D009138 5.1e-10 69.7 148 40.5
FAN10G3286 Fragaria x ananassa HOM05D006186 ORTHO05D009138 6.7e-10 69.3 308 25.0
FAN22G2351 Fragaria x ananassa HOM05D006186 ORTHO05D009138 6.7e-10 69.3 279 26.2
FAN09G3194 Fragaria x ananassa HOM05D006186 ORTHO05D009138 1.9e-09 67.8 179 31.8
Migut.N03356 Erythranthe guttata HOM05D000051 ORTHO05D000843 4.3e-09 66.6 252 26.2
FvH4_7g18893 Fragaria vesca HOM05D006186 ORTHO05D009138 4.3e-09 66.6 178 32.0
Lsat_1_v5_gn_7_108840 Lactuca sativa HOM05D000051 ORTHO05D000015 4.3e-09 66.6 353 25.2
Lj2A948G37 Lonicera japonica HOM05D000051 ORTHO05D000015 4.3e-09 66.6 213 32.4
Actinidia32125 Actinidia chinensis HOM05D000617 ORTHO05D000229 5.7e-09 66.2 342 26.0
FvH4_4g33210 Fragaria vesca HOM05D006186 ORTHO05D009138 7.4e-09 65.9 278 27.7
Aqoxy4G00512 Aquilegia oxysepala HOM05D000312 ORTHO05D000221 9.6e-09 65.5 242 27.7
Carub.0005s2565 Capsella rubella HOM05D000689 ORTHO05D000015 1.3e-08 65.1 241 26.1
FAN19G2487 Fragaria x ananassa HOM05D006186 ORTHO05D009138 1.6e-08 64.7 300 28.3
RcHm_v2.0_Chr2g0161951 Rosa chinensis HOM05D006186 ORTHO05D012372 1.6e-08 64.7 288 27.4
RcHm_v2.0_Chr4g0442821 Rosa chinensis HOM05D006186 ORTHO05D035762 1.6e-08 64.7 179 33.0
CANSAT54G2031 Cannabis sativa HOM05D000051 ORTHO05D010453 2.1e-08 64.3 364 24.2
CANSAT80G2150 Cannabis sativa HOM05D000051 ORTHO05D010453 2.1e-08 64.3 324 27.2
PSO210G4528 Papaver somniferum HOM05D000051 ORTHO05D003312 2.8e-08 63.9 237 24.9
FAN12G3981 Fragaria x ananassa HOM05D006186 ORTHO05D009138 4.8e-08 63.2 260 26.5
Aa31LG8G16210 Aethionema arabicum HOM05D000051 ORTHO05D000015 6.3e-08 62.8 272 26.5
FAN09G0644 Fragaria x ananassa HOM05D006186 ORTHO05D009138 6.3e-08 62.8 303 26.4
CAN.G996.18 Capsicum annuum HOM05D009599 ORTHO05D011640 8.2e-08 62.4 354 23.4
Migut.E00509 Erythranthe guttata HOM05D005930 ORTHO05D003423 1.1e-07 62.0 246 24.4
vmacro18828 Vaccinium macrocarpon HOM05D001477 ORTHO05D001182 1.1e-07 62.0 349 24.1
CANSAT80G1807 Cannabis sativa HOM05D000051 ORTHO05D010453 1.4e-07 61.6 359 23.7
FAN24G1717 Fragaria x ananassa HOM05D006186 ORTHO05D009138 1.8e-07 61.2 128 35.9
Nn1g06755 Nelumbo nucifera HOM05D001396 ORTHO05D000493 1.8e-07 61.2 310 26.5
Rhsim08G0230500 Rhododendron simsii HOM05D001477 ORTHO05D001182 1.8e-07 61.2 355 25.6
CANSAT54G2277 Cannabis sativa HOM05D000051 ORTHO05D010453 2.4e-07 60.8 373 22.8
FvH4_6g51091 Fragaria vesca HOM05D006186 ORTHO05D009138 2.4e-07 60.8 163 31.9
MD09G1197600 Malus domestica HOM05D001477 ORTHO05D001182 2.4e-07 60.8 361 23.5
COL.COLO4_09618 Corchorus olitorius HOM05D000051 ORTHO05D044699 3.1e-07 60.5 351 23.4
QL02p094064 Quercus lobata HOM05D001477 ORTHO05D001182 5.3e-07 59.7 356 24.7
CiPaw.15G162600 Carya illinoinensis HOM05D001477 ORTHO05D001182 6.9e-07 59.3 387 23.0
FAN07G0358 Fragaria x ananassa HOM05D006186 ORTHO05D009138 6.9e-07 59.3 284 25.7
FAN07G2685 Fragaria x ananassa HOM05D006186 ORTHO05D009138 6.9e-07 59.3 284 25.7
Carub.0008s1717 Capsella rubella HOM05D000051 ORTHO05D000015 9.0e-07 58.9 196 27.0
Migut.E01276 Erythranthe guttata HOM05D000576 ORTHO05D000368 9.0e-07 58.9 301 23.9
FvH4_4g33180 Fragaria vesca HOM05D006186 ORTHO05D029544 9.0e-07 58.9 287 27.5
FAN12G0814 Fragaria x ananassa HOM05D006186 ORTHO05D035762 9.0e-07 58.9 175 32.0
Prupe.8G124500 Prunus persica HOM05D006186 ORTHO05D009138 9.0e-07 58.9 110 39.1
QL05p053661 Quercus lobata HOM05D001477 ORTHO05D001182 9.0e-07 58.9 338 22.8
HanXRQChr17g0564571 Helianthus annuus HOM05D000051 ORTHO05D000015 1.2e-06 58.5 233 28.3
PSO170G6389 Papaver somniferum HOM05D000051 ORTHO05D000015 1.2e-06 58.5 268 22.8
BolC9t57626H Brassica oleracea HOM05D000051 ORTHO05D000015 1.5e-06 58.2 197 23.4
FAN10G2323 Fragaria x ananassa HOM05D006186 ORTHO05D009138 2.0e-06 57.8 200 28.0
BNapus_Darmor_BZH_scaffold_38p00440 Brassica napus HOM05D000051 ORTHO05D000015 2.6e-06 57.4 202 25.2
FAN22G1356 Fragaria x ananassa HOM05D006186 ORTHO05D029358 2.6e-06 57.4 176 31.8
QL05p074545 Quercus lobata HOM05D000051 ORTHO05D000015 2.6e-06 57.4 200 25.0
SalBow2G2327 Salvia bowleyana HOM05D007834 ORTHO05D003423 3.4e-06 57.0 264 24.6
GSVIVG01016843001 Vitis vinifera HOM05D001477 ORTHO05D001182 3.4e-06 57.0 337 24.3
Thhalv10000471m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 5.9e-06 56.2 262 24.4
Potri.013G146800 Populus trichocarpa HOM05D001477 ORTHO05D001182 5.9e-06 56.2 309 25.9
QL05p074592 Quercus lobata HOM05D000051 ORTHO05D000015 5.9e-06 56.2 200 25.5
AT5G22700 Arabidopsis thaliana HOM05D000051 ORTHO05D000015 7.6e-06 55.8 197 26.4
Cfa014270 Carpinus fangiana HOM05D001477 ORTHO05D001182 7.6e-06 55.8 297 26.6
Migut.E00539 Erythranthe guttata HOM05D005930 ORTHO05D003423 7.6e-06 55.8 224 25.0
FAN25G3595 Fragaria x ananassa HOM05D006186 ORTHO05D009138 7.6e-06 55.8 92 35.9
Medtr2g100570 Medicago truncatula HOM05D001477 ORTHO05D001182 7.6e-06 55.8 335 24.5
QL05p074490 Quercus lobata HOM05D000051 ORTHO05D000015 7.6e-06 55.8 205 25.9
C02p11030 Brassica napus HOM05D000051 ORTHO05D000015 1.0e-05 55.5 201 24.9
BolC2t07175H Brassica oleracea HOM05D000051 ORTHO05D000015 1.0e-05 55.5 201 24.9
Thhalv10019578m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 1.0e-05 55.5 193 29.0
FAN03G1763 Fragaria x ananassa HOM05D006186 ORTHO05D009138 1.0e-05 55.5 122 38.5
Rhsim13G0198300 Rhododendron simsii HOM05D000051 ORTHO05D000015 1.0e-05 55.5 296 25.0


User provided reference genes

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