Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 1.8e-105 386.0 194 100.0
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.1e-105 384.4 194 99.5
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.1e-105 384.4 194 99.5
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 8.2e-103 377.1 202 95.5
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.4e-102 375.6 206 93.7
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 3.1e-102 375.2 194 96.4
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 3.4e-93 345.1 194 89.7
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.0e-92 343.6 175 98.3
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 3.8e-92 341.7 194 88.7
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 7.9e-90 334.0 194 86.1
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.4e-89 333.2 197 84.3
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 6.7e-89 330.9 197 83.8
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 6.3e-87 324.3 194 84.0
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 6.3e-87 324.3 194 82.5
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 8.2e-87 323.9 194 81.4
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 8.2e-87 323.9 194 82.0
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 1.1e-86 323.6 194 82.5
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.4e-86 323.2 194 82.0
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 3.1e-86 322.0 194 81.4
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.2e-85 320.1 194 80.4
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 3.4e-85 318.5 194 81.4
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.3e-84 316.6 192 82.3
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 6.5e-84 314.3 198 78.8
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.1e-83 313.5 195 81.5
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.4e-83 313.2 194 80.9
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 1.9e-83 312.8 194 80.4
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 2.5e-83 312.4 195 79.5
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 2.5e-83 312.4 194 80.4
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 3.2e-83 312.0 192 81.2
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 3.2e-83 312.0 194 81.4
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 3.2e-83 312.0 194 80.4
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 4.2e-83 311.6 194 80.4
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 5.5e-83 311.2 194 78.9
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 9.4e-83 310.5 194 77.8
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 9.4e-83 310.5 195 79.0
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.2e-82 310.1 198 77.8
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.1e-82 309.3 195 80.0
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 2.1e-82 309.3 194 79.9
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 2.7e-82 308.9 195 80.0
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 6.1e-82 307.8 194 78.9
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 6.1e-82 307.8 193 80.8
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 6.1e-82 307.8 194 79.4
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 7.9e-82 307.4 198 80.3
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 1.0e-81 307.0 197 77.7
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.0e-81 307.0 194 78.4
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.0e-81 307.0 201 75.6
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.0e-81 307.0 201 77.1
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.4e-81 306.6 194 78.9
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.4e-81 306.6 195 79.0
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.4e-81 306.6 194 78.9
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.3e-81 305.8 201 76.6
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 2.3e-81 305.8 194 77.3
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 3.0e-81 305.4 198 77.8
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 3.9e-81 305.1 194 78.4
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 5.1e-81 304.7 193 77.7
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.7e-81 304.3 195 77.9
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.7e-81 304.3 194 77.3
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 6.7e-81 304.3 199 74.4
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.1e-80 303.5 194 76.8
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.1e-80 303.5 196 77.0
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.5e-80 303.1 203 75.9
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.5e-80 303.1 194 77.8
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 2.0e-80 302.8 194 76.8
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 2.0e-80 302.8 195 76.4
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.0e-80 302.8 194 77.8
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.0e-80 302.8 203 73.9
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 2.6e-80 302.4 194 78.4
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 2.6e-80 302.4 194 75.8
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.6e-80 302.4 210 73.3
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 3.3e-80 302.0 196 77.0
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 3.3e-80 302.0 194 76.3
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 7.4e-80 300.8 201 74.6
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 9.7e-80 300.4 198 74.2
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 9.7e-80 300.4 201 75.1
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 9.7e-80 300.4 202 73.8
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.3e-79 300.1 196 76.5
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.3e-79 300.1 202 73.3
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.7e-79 299.7 197 75.1
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 2.2e-79 299.3 199 74.4
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.2e-79 299.3 201 74.1
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.2e-79 299.3 200 75.5
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 4.8e-79 298.1 197 74.6
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 6.3e-79 297.7 197 75.1
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 8.2e-79 297.4 197 74.1
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 8.2e-79 297.4 196 76.0
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 1.8e-78 296.2 197 74.1
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 1.8e-78 296.2 197 74.1
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.1e-78 295.4 201 72.6
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.1e-78 295.4 201 72.6
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 5.3e-78 294.7 197 73.6
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 5.3e-78 294.7 199 73.4
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 5.3e-78 294.7 194 74.7
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 7.0e-78 294.3 194 74.7
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 7.0e-78 294.3 204 73.5
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 2.0e-77 292.7 175 83.4
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 2.0e-77 292.7 195 76.4
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.3e-76 290.0 197 74.6
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.3e-76 290.0 197 74.6
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 1.3e-76 290.0 196 75.0
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.2e-76 289.3 186 78.0
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 2.9e-76 288.9 194 77.3
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 5.0e-76 288.1 200 73.5
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 8.5e-76 287.3 217 67.7
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.9e-75 286.2 194 74.7
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 2.5e-75 285.8 198 74.2
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 2.5e-75 285.8 197 72.1
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.5e-75 285.8 192 75.0
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 4.2e-75 285.0 201 73.6
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 5.5e-75 284.6 201 73.6
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.6e-74 283.1 198 72.7
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 1.6e-74 283.1 194 73.7
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 8.0e-74 280.8 192 71.9
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 1.0e-73 280.4 194 73.7
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 1.4e-73 280.0 197 72.1
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 2.3e-73 279.3 198 73.2
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 3.0e-73 278.9 196 69.4
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.0e-73 278.9 176 79.5
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 3.0e-73 278.9 202 71.8
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 4.0e-73 278.5 243 62.1
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 6.7e-73 277.7 223 65.5
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 1.1e-72 276.9 198 73.2
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 5.7e-72 274.6 198 71.7
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.7e-71 273.1 193 69.4
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 2.2e-71 272.7 211 68.7
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 4.8e-71 271.6 180 76.1
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 2.4e-70 269.2 204 71.1
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 5.3e-70 268.1 188 71.3
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.2e-69 266.9 193 68.4
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 4.5e-69 265.0 189 70.4
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 6.5e-68 261.2 201 68.2
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 8.5e-68 260.8 213 64.8
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.5e-67 260.0 183 68.9
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 1.9e-67 259.6 215 64.7
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 4.2e-67 258.5 194 69.1
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.0e-65 253.8 185 67.0
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 5.2e-65 251.5 233 60.5
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 2.6e-64 249.2 181 68.5
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 4.8e-63 245.0 190 67.4
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 1.4e-62 243.4 181 68.0
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 9.1e-62 240.7 199 61.8
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.5e-59 233.4 194 63.9
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.6e-58 229.9 179 68.2
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 4.4e-56 221.9 205 60.5
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 1.1e-51 207.2 154 68.8
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.7e-47 192.2 116 81.9
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 3.2e-46 189.1 129 76.0
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 9.2e-46 187.6 177 57.1
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.7e-39 166.8 99 85.9
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 1.4e-38 163.7 99 85.9
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 4.1e-38 162.2 106 78.3
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 9.2e-38 161.0 188 53.2
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.3e-36 156.4 97 72.2
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 7.1e-30 134.8 79 77.2
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 6.6e-28 128.3 71 77.5
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.5e-27 127.1 195 45.1
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.5e-27 126.3 70 90.0
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 3.3e-27 125.9 95 69.5
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 5.2e-25 118.6 101 65.3
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 9.9e-24 114.4 190 38.4
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 7.1e-22 108.2 192 37.0
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 7.8e-21 104.8 100 61.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.2e-18 97.4 192 40.1
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.6e-18 97.1 71 63.4
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 5.2e-17 92.0 62 67.7
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 8.9e-17 91.3 65 67.7
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 1.2e-16 90.9 67 61.2
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 2.6e-16 89.7 192 38.5
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 4.6e-13 79.0 165 35.8
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.3e-12 77.4 51 76.5
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.7e-12 77.0 53 73.6
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 1.1e-11 74.3 61 60.7
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.6e-08 63.2 70 51.4


User provided reference genes

Program Settings