Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g07520 Fragaria vesca HOM05D006665 ORTHO05D008327 7.6e-222 773.5 376 100.0
FAN26G0384 Fragaria x ananassa HOM05D006665 ORTHO05D008327 4.9e-221 770.8 376 99.5
FAN19G1242 Fragaria x ananassa HOM05D006665 ORTHO05D008327 7.1e-220 766.9 377 99.5
FAN23G0824 Fragaria x ananassa HOM05D006665 ORTHO05D008327 9.0e-215 750.0 376 97.1
FAN26G1216 Fragaria x ananassa HOM05D006665 ORTHO05D008327 2.4e-207 725.3 376 95.5
RcHm_v2.0_Chr5g0011451 Rosa chinensis HOM05D006665 ORTHO05D008327 1.3e-205 719.5 376 93.4
Prupe.4G065800 Prunus persica HOM05D006665 ORTHO05D008327 5.0e-181 637.9 375 83.5
MD05G1296500 Malus domestica HOM05D006665 ORTHO05D008327 4.7e-179 631.3 375 81.3
QL05p048519 Quercus lobata HOM05D006665 ORTHO05D008327 4.1e-159 565.1 379 71.8
Cfa000642 Carpinus fangiana HOM05D006665 ORTHO05D008327 5.7e-153 544.7 380 69.7
CSS0008142 Camellia sinensis var. sinensis HOM05D006665 ORTHO05D008327 2.2e-152 542.7 373 68.9
CANSAT80G2447 Cannabis sativa HOM05D000074 ORTHO05D000220 3.1e-151 538.9 379 69.1
TAR627G0088 Trochodendron aralioides HOM05D006665 ORTHO05D008327 4.1e-151 538.5 375 70.4
Gohir.A10G035200 Gossypium hirsutum HOM05D006665 ORTHO05D008327 1.2e-150 537.0 373 66.8
THA.LOC104812882 Tarenaya hassleriana HOM05D006665 ORTHO05D008327 1.2e-150 537.0 373 68.1
Ciclev10015641m.g Citrus clementina HOM05D006665 ORTHO05D008327 1.6e-150 536.6 377 69.2
Nn3g21119 Nelumbo nucifera HOM05D006665 ORTHO05D008327 2.0e-150 536.2 378 69.0
PGR042G0915 Punica granatum HOM05D006665 ORTHO05D008327 2.7e-150 535.8 371 69.3
Eucgr.E04353 Eucalyptus grandis HOM05D006665 ORTHO05D008327 7.7e-150 534.3 381 68.8
Duzib235G0558 Durio zibethinus HOM05D006665 ORTHO05D008327 2.9e-149 532.3 374 67.4
Eucgr.E02766 Eucalyptus grandis HOM05D006665 ORTHO05D008327 3.8e-149 531.9 381 68.2
Gorai.011G037800 Gossypium raimondii HOM05D006665 ORTHO05D008327 3.8e-149 531.9 373 66.0
Gohir.D10G035900 Gossypium hirsutum HOM05D006665 ORTHO05D008327 6.6e-149 531.2 373 66.0
Thecc.06G166800 Theobroma cacao HOM05D006665 ORTHO05D008327 1.1e-148 530.4 374 68.2
HanXRQChr15g0480791 Helianthus annuus HOM05D006665 ORTHO05D008327 1.5e-148 530.0 380 68.4
TWI73G0293 Tripterygium wilfordii HOM05D006665 ORTHO05D008327 8.0e-147 524.2 372 69.1
GSVIVG01021249001 Vitis vinifera HOM05D006665 ORTHO05D008327 8.9e-146 520.8 371 68.5
Dinv32346 Davidia involucrata HOM05D006665 ORTHO05D008327 7.5e-145 517.7 376 68.1
Potri.011G069700 Populus trichocarpa HOM05D006665 ORTHO05D008327 7.5e-145 517.7 377 68.2
COL.COLO4_31251 Corchorus olitorius HOM05D006665 ORTHO05D008327 2.9e-144 515.8 393 63.6
CiPaw.09G072200 Carya illinoinensis HOM05D006665 ORTHO05D008327 1.4e-143 513.5 380 67.9
Sabra11G0053800 Salix brachista HOM05D006665 ORTHO05D008327 2.4e-143 512.7 377 67.9
Lalb_Chr13g0295211 Lupinus albus HOM05D006665 ORTHO05D008327 9.2e-143 510.8 377 66.0
CsaV3_1G033140 Cucumis sativus L. HOM05D006665 ORTHO05D008327 4.6e-142 508.4 381 64.6
Manes.17G058400 Manihot esculenta HOM05D006665 ORTHO05D008327 3.9e-141 505.4 370 67.0
PSO170G0566 Papaver somniferum HOM05D000074 ORTHO05D000220 9.5e-140 500.7 378 65.3
Sed0010934 Sechium edule HOM05D006665 ORTHO05D008327 2.1e-139 499.6 373 64.9
PGSC0003DMG400028425 Solanum tuberosum HOM05D006665 ORTHO05D008327 3.1e-138 495.7 378 63.2
Aqoxy4G00257 Aquilegia oxysepala HOM05D006665 ORTHO05D008327 1.2e-137 493.8 377 64.2
Solyc02g072230.3 Solanum lycopersicum HOM05D006665 ORTHO05D008327 1.5e-137 493.4 378 63.0
Sopen02g021210 Solanum pennellii HOM05D006665 ORTHO05D008327 1.5e-137 493.4 378 62.7
DCAR_005186 Daucus carota HOM05D006665 ORTHO05D008327 4.4e-137 491.9 377 63.9
MBI07_g09544_MAGBIO Magnolia biondii HOM05D006665 ORTHO05D008327 1.3e-136 490.3 381 63.0
Cc02_g15490 Coffea canephora HOM05D006665 ORTHO05D008327 1.7e-136 490.0 376 63.8
ECA236G1698 Erigeron canadensis HOM05D000074 ORTHO05D000220 1.4e-135 486.9 370 63.8
Lj2C318T4 Lonicera japonica HOM05D006665 ORTHO05D008327 1.4e-135 486.9 375 63.7
Carub.0008s0223 Capsella rubella HOM05D006665 ORTHO05D008327 1.9e-135 486.5 371 63.3
AT5G45760 Arabidopsis thaliana HOM05D006665 ORTHO05D008327 4.1e-135 485.3 371 62.3
CARHR176220 Cardamine hirsuta HOM05D006665 ORTHO05D008327 2.0e-134 483.0 371 62.8
AL8G12850 Arabidopsis lyrata HOM05D006665 ORTHO05D008327 2.7e-134 482.6 371 62.5
Nitab4.5_0000437g0180 Nicotiana tabacum HOM05D006665 ORTHO05D008327 2.7e-134 482.6 384 62.2
MSTRG.7424 Avicennia marina HOM05D006665 ORTHO05D008327 3.5e-134 482.3 378 64.6
Nitab4.5_0008526g0030 Nicotiana tabacum HOM05D006665 ORTHO05D008327 7.8e-134 481.1 376 62.2
Sc05g0006960 Simmondsia chinensis HOM05D006665 ORTHO05D008327 5.6e-132 474.9 373 63.0
Sp2g10670 Schrenkiella parvula HOM05D006665 ORTHO05D008327 7.3e-132 474.6 371 62.5
Medtr8g086605 Medicago truncatula HOM05D006665 ORTHO05D008327 4.0e-130 468.8 378 59.5
Sabra11G0057300 Salix brachista HOM05D000074 ORTHO05D000220 3.4e-129 465.7 352 66.2
Aa31LG9G7310 Aethionema arabicum HOM05D006665 ORTHO05D008327 4.4e-129 465.3 379 62.0
ClCG03G007500 Citrullus lanatus HOM05D000074 ORTHO05D000220 8.3e-128 461.1 372 60.5
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.4e-127 460.3 365 61.9
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 1.4e-127 460.3 366 62.0
Lj4g0005276 Lotus japonicus HOM05D000074 ORTHO05D008327 1.4e-127 460.3 369 61.2
Phvul.002G240300 Phaseolus vulgaris HOM05D006665 ORTHO05D008327 1.9e-127 459.9 377 59.2
TPR.G6756 Trifolium pratense HOM05D006665 ORTHO05D008327 3.2e-127 459.1 375 58.1
Migut.M01013 Erythranthe guttata HOM05D006665 ORTHO05D008327 4.1e-127 458.8 379 60.4
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 5.4e-127 458.4 369 61.5
Glyma.05G160032 Glycine max HOM05D006665 ORTHO05D008327 6.6e-125 451.4 377 59.4
Glyma.08G117600 Glycine max HOM05D006665 ORTHO05D008327 6.6e-125 451.4 377 58.4
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 4.3e-124 448.7 363 60.3
EL10Ac8g20571 Beta vulgaris HOM05D006665 ORTHO05D008327 1.2e-123 447.2 376 59.8
Thhalv10000923m.g Eutrema salsugineum HOM05D006665 ORTHO05D008327 1.6e-123 446.8 395 57.2
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 6.2e-123 444.9 355 61.7
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 8.1e-123 444.5 358 61.5
Peaxi162Scf00371g00319 Petunia axillaris HOM05D006665 ORTHO05D008327 5.4e-119 431.8 374 57.5
Os01g0205100 Oryza sativa ssp. japonica HOM05D006665 ORTHO05D008327 2.3e-117 426.4 373 56.8
AUR62027710 Chenopodium quinoa HOM05D006665 ORTHO05D008327 1.9e-116 423.3 371 57.4
arahy.Tifrunner.gnm1.ann1.L41MS4 Arachis hypogaea HOM05D006665 ORTHO05D008327 8.9e-114 414.5 380 56.8
arahy.Tifrunner.gnm1.ann1.UF726L Arachis hypogaea HOM05D006665 ORTHO05D008327 2.7e-110 402.9 374 56.1
Actinidia07650 Actinidia chinensis HOM05D006665 ORTHO05D008327 9.6e-100 367.9 253 68.8
SEGI_17628 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 3.5e-94 349.4 379 47.5
ATR0012G051 Amborella trichopoda HOM05D006665 ORTHO05D008327 1.0e-93 347.8 312 58.3
SalBow8G2667 Salvia bowleyana HOM05D000074 ORTHO05D000220 6.7e-93 345.1 388 49.5
Ah.14g087040 Amaranthus hybridus HOM05D006665 ORTHO05D008327 4.9e-88 328.9 403 45.9
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 2.7e-86 323.2 353 51.3
Pp3c18_2320 Physcomitrium patens HOM05D006665 ORTHO05D008327 2.5e-76 290.0 381 42.0
vmacro16044 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 2.2e-75 287.0 223 65.0
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 3.7e-75 286.2 367 40.9
Zm00001eb120830 Zea mays HOM05D006665 ORTHO05D008327 4.1e-74 282.7 301 50.8
SMO118G0425 Selaginella moellendorffii HOM05D006665 ORTHO05D008327 1.9e-71 273.9 382 38.5
Lsat_1_v5_gn_7_25921 Lactuca sativa HOM05D006665 ORTHO05D008327 2.3e-69 266.9 204 63.7
Atru.chr10.1583 Acer truncatum HOM05D006665 ORTHO05D008327 1.1e-68 264.6 193 64.8
Rhsim02G0145600 Rhododendron simsii HOM05D006665 ORTHO05D008327 4.3e-68 262.7 208 63.9
AagrBONN_evm.TU.Sc2ySwM_117.2766 Anthoceros agrestis HOM05D006665 ORTHO05D008327 1.8e-66 257.3 318 44.3
Atru.chr10.1584 Acer truncatum HOM05D006665 ORTHO05D008327 4.1e-66 256.1 186 68.8
VMungo0251G1318 Vigna mungo HOM05D006665 ORTHO05D008327 3.4e-65 253.1 255 50.6
Haze_06187 Corylus avellana HOM05D006665 ORTHO05D008327 1.3e-64 251.1 185 70.8
Dinv12760 Davidia involucrata HOM05D006665 ORTHO05D008327 8.8e-61 238.4 235 54.0
CBR_g34019 Chara braunii HOM05D006665 ORTHO05D008327 2.0e-60 237.3 409 36.7
Hma1.2p1_0113F.1_g055090 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 3.2e-55 219.9 209 56.9
Hma1.2p1_0113F.1_g055096 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 3.2e-55 219.9 209 56.9
Hund25815 Selenicereus undatus HOM05D006665 ORTHO05D008327 1.8e-53 214.2 180 60.6
AUR62039464 Chenopodium quinoa HOM05D006665 ORTHO05D008327 3.0e-53 213.4 180 62.2
BcaB06g27285 Brassica carinata HOM05D006665 ORTHO05D008327 1.1e-52 211.5 245 46.1
Cpa.g.sc7.98 Carica papaya HOM05D006665 ORTHO05D008327 2.2e-48 197.2 149 60.4
RcHm_v2.0_Chr5g0011471 Rosa chinensis HOM05D006665 ORTHO05D008327 1.0e-45 188.3 173 59.0
Psat2g000080 Pisum sativum HOM05D006665 ORTHO05D008327 2.0e-41 174.1 139 62.6
Psat7g069040 Pisum sativum HOM05D006665 ORTHO05D008327 2.9e-40 170.2 264 40.2
BcaB04g18653 Brassica carinata HOM05D006665 ORTHO05D008327 3.8e-40 169.9 154 53.9
Oeu043117.1 Olea europaea HOM05D006665 ORTHO05D008327 3.8e-40 169.9 149 61.1
SGA_v2.0_scaffold1G00072 Striga asiatica HOM05D006665 ORTHO05D008327 3.8e-40 169.9 126 61.1
vmacro16043 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 7.5e-36 155.6 103 68.9
Haze_06186 Corylus avellana HOM05D006665 ORTHO05D008327 5.4e-34 149.4 143 53.8
Psat7g069080 Pisum sativum HOM05D006665 ORTHO05D008327 1.6e-33 147.9 125 52.8
FAN25G1258 Fragaria x ananassa HOM05D006665 ORTHO05D008327 4.3e-31 139.8 79 91.1
FvH4_3g07410 Fragaria vesca HOM05D006665 ORTHO05D008327 2.3e-29 134.0 161 55.9
FAN11G1287 Fragaria x ananassa HOM05D006665 ORTHO05D008327 3.0e-24 117.1 186 47.3
Cre16.g678400 Chlamydomonas reinhardtii HOM05D006665 ORTHO05D008327 1.1e-23 115.2 247 32.8
MCO11G387 Micromonas commoda HOM05D006665 ORTHO05D008327 1.3e-19 101.7 481 23.3
arahy.Tifrunner.gnm1.ann1.XDX40G Arachis hypogaea HOM05D006665 ORTHO05D008327 1.4e-18 98.2 79 57.0
SEGI_34445 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 5.4e-18 96.3 102 44.1
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 1.2e-17 95.1 99 48.5
Sabra04G0038600 Salix brachista HOM05D000074 ORTHO05D000220 4.6e-17 93.2 103 55.3
VMungo0251G0552 Vigna mungo HOM05D006665 ORTHO05D008327 3.4e-12 77.0 76 47.4


User provided reference genes

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