Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g07350 Fragaria vesca HOM05D006732 ORTHO05D005682 2.0e-250 868.6 437 100.0
FvH4_1g07310 Fragaria vesca HOM05D006732 ORTHO05D005682 1.1e-237 826.2 416 100.0
RcHm_v2.0_Chr2g0090681 Rosa chinensis HOM05D006732 ORTHO05D005682 2.4e-174 615.9 411 77.9
FvH4_5g09240 Fragaria vesca HOM05D006732 ORTHO05D005682 4.3e-136 488.8 366 63.7
FAN18G2797 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.3e-134 481.9 369 62.6
FAN08G0591 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.5e-133 480.3 366 62.8
RcHm_v2.0_Chr7g0225411 Rosa chinensis HOM05D006732 ORTHO05D005682 1.5e-120 437.2 418 55.0
RcHm_v2.0_Chr2g0090631 Rosa chinensis HOM05D006732 ORTHO05D005682 3.3e-120 436.0 419 56.8
RcHm_v2.0_Chr2g0088891 Rosa chinensis HOM05D006732 ORTHO05D005682 7.7e-117 424.9 370 58.4
FAN13G2469 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.5e-112 410.6 353 58.1
FAN23G0913 Fragaria x ananassa HOM05D006732 ORTHO05D005682 9.7e-112 407.9 310 67.1
FAN19G0447 Fragaria x ananassa HOM05D006732 ORTHO05D005682 9.1e-110 401.4 376 54.8
FvH4_1g04981 Fragaria vesca HOM05D006732 ORTHO05D005682 1.3e-108 397.5 413 50.8
FAN23G1322 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.9e-108 396.4 375 53.9
FvH4_1g04870 Fragaria vesca HOM05D006732 ORTHO05D005682 3.8e-108 396.0 375 53.6
FAN19G2793 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.0e-108 395.6 413 50.8
FAN26G1852 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.5e-107 393.3 416 56.0
FvH4_1g04892 Fragaria vesca HOM05D006732 ORTHO05D005682 5.5e-107 392.1 376 53.7
FAN26G0599 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.0e-106 388.3 407 52.3
FvH4_1g04982 Fragaria vesca HOM05D006732 ORTHO05D005682 6.8e-105 385.2 379 52.8
FAN19G1623 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.8e-105 385.2 370 53.8
FAN03G1911 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.8e-103 379.0 409 47.9
FAN26G0545 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.1e-102 377.9 368 53.0
FAN26G0144 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.7e-101 371.7 373 52.8
FAN23G1399 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.1e-98 363.6 352 52.3
FAN23G2814 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.1e-98 363.6 352 52.3
FAN23G0775 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.2e-97 359.0 346 51.7
FAN19G1442 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.6e-93 347.4 371 49.3
FAN19G0608 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.9e-93 345.5 325 53.2
FvH4_1g04650 Fragaria vesca HOM05D006732 ORTHO05D005682 7.7e-93 345.1 375 50.4
FAN19G1839 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.3e-92 343.6 374 50.0
FAN26G2691 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.3e-92 343.6 161 98.8
FAN19G1364 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.2e-90 337.8 333 53.2
FvH4_1g04980 Fragaria vesca HOM05D006732 ORTHO05D005682 1.6e-90 337.4 333 52.9
FAN26G0550 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.1e-90 337.0 160 96.9
FAN23G0359 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.5e-88 330.9 333 51.7
FAN23G1448 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.3e-87 325.5 373 50.1
FvH4_1g05020 Fragaria vesca HOM05D006732 ORTHO05D005682 9.2e-86 321.6 353 49.3
FAN26G1230 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.6e-85 319.3 342 47.1
FAN28G0011 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.3e-83 312.8 368 43.8
FvH4_5g09163 Fragaria vesca HOM05D006732 ORTHO05D005682 1.4e-81 307.8 216 63.4
RcHm_v2.0_Chr4g0406891 Rosa chinensis HOM05D006732 ORTHO05D005682 7.5e-72 275.4 381 42.5
FvH4_1g03870 Fragaria vesca HOM05D006732 ORTHO05D005682 1.7e-68 264.2 258 52.3
FvH4_1g04850 Fragaria vesca HOM05D006732 ORTHO05D005682 6.8e-65 252.3 162 73.5
FAN26G2548 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.6e-60 235.3 326 43.9
FvH4_1g03120 Fragaria vesca HOM05D006732 ORTHO05D005682 1.1e-59 235.0 369 39.3
FAN19G1106 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.5e-59 233.8 400 37.2
FAN03G3183 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.6e-58 231.1 386 40.4
FAN06G2841 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.0e-57 226.5 365 41.1
FAN06G4694 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.0e-57 226.5 365 41.1
FvH4_7g04610 Fragaria vesca HOM05D006732 ORTHO05D005682 1.2e-56 224.9 362 40.3
FvH4_1g03650 Fragaria vesca HOM05D006732 ORTHO05D005682 2.2e-55 220.7 405 35.8
FAN01G2330 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.4e-54 216.1 363 40.8
FvH4_1g07301 Fragaria vesca HOM05D006732 ORTHO05D005682 3.6e-50 203.4 97 95.9
FAN23G0993 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.2e-50 202.6 155 60.0
FvH4_1g03800 Fragaria vesca HOM05D006732 ORTHO05D005682 8.1e-50 202.2 394 37.3
RcHm_v2.0_Chr2g0090141 Rosa chinensis HOM05D006732 ORTHO05D005682 3.8e-47 193.4 152 57.2
FAN26G1044 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.4e-46 189.5 344 38.1
FAN10G1871 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.4e-41 174.1 272 41.9
FAN28G2932 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.1e-41 173.7 202 52.0
FAN14G2290 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.2e-40 171.8 337 37.1
FAN19G1133 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.9e-39 166.4 394 33.2
FAN26G3406 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.5e-38 162.9 195 43.6
MD02G1004600 Malus domestica HOM05D006732 ORTHO05D005682 7.1e-38 162.5 363 33.3
RcHm_v2.0_Chr2g0089871 Rosa chinensis HOM05D006732 ORTHO05D005682 7.1e-38 162.5 129 55.8
FAN19G1213 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.2e-37 161.8 364 32.7
FAN05G1364 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.3e-36 158.3 338 37.0
FvH4_1g03730 Fragaria vesca HOM05D006732 ORTHO05D005682 3.3e-35 153.7 258 37.2
FvH4_6g38540 Fragaria vesca HOM05D006732 ORTHO05D005682 7.4e-35 152.5 391 32.7
FAN23G2570 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.4e-32 143.7 75 86.7
FAN19G2470 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.0e-31 142.1 329 33.1
FAN08G2174 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.4e-31 139.0 116 56.0
FAN19G2055 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.1e-30 136.0 81 77.8
FAN23G1506 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.1e-30 136.0 64 95.3
FvH4_3g44180 Fragaria vesca HOM05D031336 ORTHO05D029596 6.0e-29 132.9 397 26.7
FAN11G3653 Fragaria x ananassa HOM05D031336 ORTHO05D029596 6.0e-29 132.9 397 26.7
FAN19G3146 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.4e-25 121.7 190 38.9
RcHm_v2.0_Chr1g0379941 Rosa chinensis HOM05D008398 ORTHO05D005682 1.4e-25 121.7 332 30.7
RcHm_v2.0_Chr1g0379901 Rosa chinensis HOM05D008398 ORTHO05D005682 1.8e-25 121.3 332 31.0
FAN28G1694 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.2e-24 118.6 157 42.7
RcHm_v2.0_Chr1g0380941 Rosa chinensis HOM05D006732 ORTHO05D005682 1.2e-24 118.6 398 27.4
FAN23G1684 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.4e-24 117.1 179 38.5
FAN18G3618 Fragaria x ananassa HOM05D008398 ORTHO05D005682 5.9e-24 116.3 321 31.8
RcHm_v2.0_Chr1g0376501 Rosa chinensis HOM05D008398 ORTHO05D005682 1.7e-23 114.8 266 31.6
FAN19G1560 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.4e-23 112.5 168 42.9
FAN19G1906 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.1e-22 112.1 149 43.6
FvH4_5g34640 Fragaria vesca HOM05D008398 ORTHO05D005682 7.2e-22 109.4 324 31.2
FvH4_5g09162 Fragaria vesca HOM05D006732 ORTHO05D005682 3.5e-21 107.1 80 63.8
FAN26G3385 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.5e-21 107.1 141 42.6
FvH4_6g50450 Fragaria vesca HOM05D008398 ORTHO05D005682 4.6e-21 106.7 411 27.7
FvH4_6g52510 Fragaria vesca HOM05D013417 ORTHO05D022618 1.3e-20 105.1 354 28.8
RcHm_v2.0_Chr1g0337091 Rosa chinensis HOM05D010677 ORTHO05D012678 1.3e-20 105.1 206 34.5
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 3.0e-20 104.0 413 26.4
RcHm_v2.0_Chr5g0043771 Rosa chinensis HOM05D018501 ORTHO05D020617 3.0e-20 104.0 339 30.7
FAN05G0770 Fragaria x ananassa HOM05D008398 ORTHO05D005682 3.9e-20 103.6 327 32.1
FAN23G1145 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.9e-20 103.6 67 67.2
RcHm_v2.0_Chr1g0329851 Rosa chinensis HOM05D006732 ORTHO05D005682 5.1e-20 103.2 199 39.2
FvH4_7g31320 Fragaria vesca HOM05D010677 ORTHO05D012678 6.7e-20 102.8 318 28.0
FvH4_7g31260 Fragaria vesca HOM05D010677 ORTHO05D012678 1.1e-19 102.1 303 28.4
FAN10G1111 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.1e-19 102.1 305 28.5
FvH4_7g27001 Fragaria vesca HOM05D010677 ORTHO05D012678 1.5e-19 101.7 409 26.4
FvH4_7g31670 Fragaria vesca HOM05D010677 ORTHO05D012678 1.9e-19 101.3 295 29.8
FAN04G2845 Fragaria x ananassa HOM05D010677 ORTHO05D012678 5.7e-19 99.8 411 26.0
FAN15G3012 Fragaria x ananassa HOM05D010677 ORTHO05D012678 7.4e-19 99.4 291 31.3
RcHm_v2.0_Chr5g0043731 Rosa chinensis HOM05D018501 ORTHO05D020617 7.4e-19 99.4 368 28.8
FAN09G2688 Fragaria x ananassa HOM05D008398 ORTHO05D005682 1.3e-18 98.6 275 33.8
RcHm_v2.0_Chr1g0337131 Rosa chinensis HOM05D006732 ORTHO05D012678 1.3e-18 98.6 203 36.5
FvH4_7g31682 Fragaria vesca HOM05D010677 ORTHO05D012678 1.6e-18 98.2 287 30.3
FAN06G1115 Fragaria x ananassa HOM05D010677 ORTHO05D012678 2.2e-18 97.8 304 26.0
FAN06G1601 Fragaria x ananassa HOM05D010677 ORTHO05D012678 2.2e-18 97.8 304 26.0
FAN14G5053 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.4e-17 95.1 297 30.6
Prupe.7G110000 Prunus persica HOM05D006732 ORTHO05D005682 1.8e-17 94.7 231 32.0
FAN03G2148 Fragaria x ananassa HOM05D018501 ORTHO05D020617 3.1e-17 94.0 318 29.2
FAN01G2543 Fragaria x ananassa HOM05D008398 ORTHO05D046348 4.1e-17 93.6 328 29.3
QL02p081954 Quercus lobata HOM05D006732 ORTHO05D005682 5.3e-17 93.2 370 26.8
FvH4_7g30481 Fragaria vesca HOM05D008398 ORTHO05D029520 9.0e-17 92.4 330 28.2
Prupe.6G029800 Prunus persica HOM05D006732 ORTHO05D005682 9.0e-17 92.4 215 30.7
FAN06G4869 Fragaria x ananassa HOM05D018501 ORTHO05D020617 1.2e-16 92.0 323 28.8
FAN28G1562 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.2e-16 92.0 71 57.7
FAN10G0863 Fragaria x ananassa HOM05D008398 ORTHO05D005682 1.5e-16 91.7 294 30.6
FAN28G2349 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.5e-16 91.7 125 40.8
FAN28G2648 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.5e-16 91.7 125 40.8
FvH4_2g38420 Fragaria vesca HOM05D013417 ORTHO05D022618 2.0e-16 91.3 356 28.4
FvH4_7g30470 Fragaria vesca HOM05D008398 ORTHO05D046348 2.0e-16 91.3 334 28.7
FAN03G3389 Fragaria x ananassa HOM05D010677 ORTHO05D012678 2.6e-16 90.9 292 28.8
FAN06G1563 Fragaria x ananassa HOM05D018501 ORTHO05D020617 2.6e-16 90.9 323 28.5
FAN06G3627 Fragaria x ananassa HOM05D008398 ORTHO05D005682 2.6e-16 90.9 334 28.4
FAN19G0291 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.6e-16 90.9 169 39.6
Prupe.2G176100 Prunus persica HOM05D006732 ORTHO05D005682 2.6e-16 90.9 283 30.0
FvH4_1g03530 Fragaria vesca HOM05D006732 ORTHO05D005682 5.9e-16 89.7 211 33.2
FvH4_7g04500 Fragaria vesca HOM05D018501 ORTHO05D020617 7.7e-16 89.4 327 29.1
FAN10G3231 Fragaria x ananassa HOM05D000122 ORTHO05D000139 7.7e-16 89.4 269 27.9
FAN23G1741 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.0e-15 89.0 124 41.1
FvH4_6g28610 Fragaria vesca HOM05D008398 ORTHO05D005682 2.2e-15 87.8 252 34.1
FAN10G3441 Fragaria x ananassa HOM05D008398 ORTHO05D005682 2.2e-15 87.8 299 27.8
FAN03G1932 Fragaria x ananassa HOM05D018501 ORTHO05D020617 2.9e-15 87.4 330 28.2
FAN06G0523 Fragaria x ananassa HOM05D008398 ORTHO05D005682 2.9e-15 87.4 326 26.7
FAN14G4282 Fragaria x ananassa HOM05D013417 ORTHO05D022618 6.5e-15 86.3 320 28.8
FAN01G1167 Fragaria x ananassa HOM05D000122 ORTHO05D000139 3.2e-14 84.0 316 25.6
FAN12G0204 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.5e-14 83.2 104 43.3
FvH4_1g04991 Fragaria vesca HOM05D006732 ORTHO05D005682 7.2e-14 82.8 160 38.8
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.2e-13 82.0 266 28.6
FAN10G3871 Fragaria x ananassa HOM05D008398 ORTHO05D005682 1.6e-13 81.6 310 28.4
FAN06G2795 Fragaria x ananassa HOM05D008398 ORTHO05D046322 2.7e-13 80.9 270 28.5
FAN03G0822 Fragaria x ananassa HOM05D010677 ORTHO05D012678 7.9e-13 79.3 181 31.5
FAN06G5012 Fragaria x ananassa HOM05D010677 ORTHO05D012678 1.0e-12 79.0 288 29.2
FAN06G3455 Fragaria x ananassa HOM05D010677 ORTHO05D012678 1.4e-12 78.6 286 29.4
RcHm_v2.0_Chr5g0014821 Rosa chinensis HOM05D006732 ORTHO05D005682 3.0e-12 77.4 350 27.1
Dinv24221 Davidia involucrata HOM05D015193 ORTHO05D005682 5.1e-12 76.6 195 32.3
FvH4_7g31310 Fragaria vesca HOM05D000122 ORTHO05D012678 1.5e-11 75.1 132 31.8
FAN03G1797 Fragaria x ananassa HOM05D008398 ORTHO05D029520 1.5e-11 75.1 257 27.6
FAN03G3131 Fragaria x ananassa HOM05D008398 ORTHO05D029520 1.5e-11 75.1 257 27.6
FAN01G0845 Fragaria x ananassa HOM05D008398 ORTHO05D029520 2.0e-11 74.7 228 27.6
FvH4_1g04520 Fragaria vesca HOM05D006732 ORTHO05D005682 2.5e-11 74.3 85 41.2
FAN05G1573 Fragaria x ananassa HOM05D008398 ORTHO05D005682 3.3e-11 73.9 207 34.3
FAN10G3802 Fragaria x ananassa HOM05D008398 ORTHO05D035411 1.1e-09 68.9 229 27.5
FAN19G1354 Fragaria x ananassa HOM05D006732 ORTHO05D035266 1.1e-09 68.9 191 34.0
FAN23G1373 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.8e-09 68.2 76 44.7
QL02p078454 Quercus lobata HOM05D006732 ORTHO05D005682 2.4e-09 67.8 198 28.8
FvH4_4g06202 Fragaria vesca HOM05D006732 ORTHO05D005682 1.2e-08 65.5 53 50.9
FvH4_1g04910 Fragaria vesca HOM05D006732 ORTHO05D046085 2.0e-08 64.7 54 53.7
FAN19G2861 Fragaria x ananassa HOM05D006732 ORTHO05D046085 4.5e-08 63.5 51 56.9
FAN25G1334 Fragaria x ananassa HOM05D031336 ORTHO05D029596 1.0e-07 62.4 70 45.7
FAN06G3593 Fragaria x ananassa HOM05D000122 ORTHO05D012678 1.4e-06 58.5 132 27.3
FAN06G4197 Fragaria x ananassa HOM05D000122 ORTHO05D012678 1.4e-06 58.5 132 27.3


User provided reference genes

Program Settings