Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 4.3e-167 591.3 306 100.0
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.6e-161 572.8 306 97.4
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 4.7e-161 571.2 306 97.1
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.8e-160 569.3 306 96.7
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.8e-160 569.3 306 96.7
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.6e-159 565.5 306 95.8
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 5.5e-130 468.0 308 82.1
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 4.5e-124 448.4 307 75.9
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 9.8e-119 430.6 306 75.2
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 5.0e-115 418.3 306 72.5
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 6.6e-115 417.9 297 73.4
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 4.3e-114 415.2 306 69.9
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 4.3e-114 415.2 306 71.9
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 8.0e-113 411.0 292 70.5
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 8.9e-112 407.5 293 72.4
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 6.4e-110 401.4 308 69.5
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 2.1e-108 396.4 300 70.3
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 2.1e-108 396.4 290 71.0
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.1e-108 396.4 306 67.3
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 3.5e-108 395.6 306 69.3
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 3.5e-108 395.6 305 69.8
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 1.3e-107 393.7 306 67.0
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 3.9e-107 392.1 306 67.0
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 5.1e-107 391.7 307 67.4
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 1.5e-106 390.2 293 72.0
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 2.5e-106 389.4 289 69.6
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 5.6e-106 388.3 306 69.3
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 1.6e-105 386.7 299 65.9
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 1.6e-105 386.7 304 67.4
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 2.3e-104 382.9 307 63.5
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 5.2e-104 381.7 306 65.4
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 6.8e-104 381.3 308 64.6
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 8.9e-104 380.9 298 68.1
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 1.2e-103 380.6 296 65.5
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 2.6e-103 379.4 306 65.4
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.3e-102 377.1 296 67.2
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 4.9e-102 375.2 307 65.5
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.4e-101 373.6 298 67.1
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.4e-101 373.6 298 67.1
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 2.4e-101 372.9 298 66.1
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 2.4e-101 372.9 298 66.1
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 5.4e-101 371.7 305 65.2
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 5.4e-101 371.7 303 65.0
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 7.1e-101 371.3 296 66.2
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 2.1e-100 369.8 296 65.5
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 2.1e-100 369.8 296 65.9
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 2.7e-100 369.4 297 66.0
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 3.5e-100 369.0 296 65.9
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 6.0e-100 368.2 301 65.4
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 6.0e-100 368.2 308 60.7
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 2.3e-99 366.3 306 61.4
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 2.5e-98 362.8 306 60.8
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 1.2e-97 360.5 302 61.6
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 1.2e-97 360.5 290 66.2
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 1.6e-97 360.1 307 61.9
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 2.8e-97 359.4 306 60.5
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 4.7e-97 358.6 308 62.0
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 1.1e-96 357.5 306 61.8
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 5.2e-96 355.1 297 64.6
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 6.8e-96 354.8 299 63.9
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 1.2e-95 354.0 299 62.2
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 1.2e-95 354.0 306 63.7
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 5.8e-95 351.7 312 60.6
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 1.7e-94 350.1 301 64.5
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 2.2e-94 349.7 292 62.0
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 2.2e-94 349.7 290 61.4
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 4.9e-94 348.6 298 64.1
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 2.4e-93 346.3 309 60.2
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 9.2e-93 344.4 295 61.4
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 1.2e-92 344.0 310 59.4
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 3.5e-92 342.4 316 58.9
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 6.0e-92 341.7 256 67.2
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 1.3e-91 340.5 306 60.1
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 1.7e-91 340.1 306 60.5
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 1.7e-91 340.1 234 73.9
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 3.9e-91 339.0 301 63.1
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 6.6e-91 338.2 297 64.0
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 6.6e-91 338.2 308 59.7
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 6.6e-91 338.2 298 58.7
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 8.7e-91 337.8 297 62.6
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 1.9e-90 336.7 312 57.7
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 1.9e-90 336.7 312 57.7
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 1.9e-90 336.7 308 56.5
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 7.3e-90 334.7 247 69.2
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 1.2e-89 334.0 303 59.7
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 2.8e-89 332.8 310 58.1
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 4.7e-89 332.0 310 58.1
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 1.4e-88 330.5 310 57.7
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 4.0e-88 328.9 310 57.7
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 5.3e-88 328.6 310 57.4
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 6.9e-88 328.2 306 57.2
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 1.2e-87 327.4 293 60.1
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 2.6e-87 326.2 303 56.1
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 4.4e-87 325.5 294 57.8
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 5.8e-87 325.1 314 56.7
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 8.4e-86 321.2 294 60.9
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.9e-85 320.1 298 57.7
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 3.2e-85 319.3 309 58.3
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 4.2e-85 318.9 308 56.5
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 4.2e-85 318.9 298 58.4
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 1.0e-83 314.3 296 58.1
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 3.9e-83 312.4 317 54.9
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 1.5e-82 310.5 280 58.6
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 1.9e-82 310.1 357 51.3
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 4.3e-82 308.9 263 61.2
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 1.3e-81 307.4 310 56.8
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 1.6e-81 307.0 311 55.9
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 6.2e-81 305.1 313 55.0
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 6.9e-80 301.6 263 62.7
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 1.5e-79 300.4 309 56.0
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 1.3e-78 297.4 300 53.0
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 1.3e-78 297.4 229 69.9
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 1.7e-78 297.0 310 53.2
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 3.8e-78 295.8 307 51.1
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 4.9e-78 295.4 307 50.8
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 6.4e-78 295.0 294 55.1
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 9.3e-77 291.2 241 63.1
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 1.9e-74 283.5 305 53.4
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 1.3e-70 270.8 284 53.9
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 1.3e-62 244.2 306 45.4
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 2.7e-60 236.5 321 44.5
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 1.8e-59 233.8 297 48.5
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 6.3e-57 225.3 230 55.2
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 9.0e-56 221.5 179 64.2
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 1.5e-55 220.7 210 55.2
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 8.2e-49 198.4 315 37.8
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 3.1e-48 196.4 202 55.4
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 1.0e-43 181.4 263 40.3
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 2.7e-36 156.8 282 38.7
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 8.0e-36 155.2 100 76.0
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 2.8e-33 146.7 131 61.1
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.2e-31 141.4 134 61.2
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.2e-31 141.4 134 61.2
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 6.3e-25 119.0 219 31.1
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 1.1e-24 118.2 64 90.6
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 1.4e-24 117.9 204 33.3
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 4.1e-24 116.3 62 91.9
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 3.8e-22 109.8 68 72.1
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 8.5e-22 108.6 66 72.7
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 7.2e-21 105.5 232 32.3
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.2e-15 88.2 52 78.8
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 2.9e-14 83.6 94 52.1
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 5.0e-14 82.8 50 76.0
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 4.2e-13 79.7 64 64.1
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 3.6e-12 76.6 119 43.7
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 5.2e-11 72.8 119 45.4
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 6.8e-11 72.4 45 64.4
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.5e-10 71.2 45 66.7
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 2.2e-09 67.4 130 43.1
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 6.3e-09 65.9 43 67.4
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 1.4e-08 64.7 39 74.4


User provided reference genes

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