Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 1.6e-258 895.6 461 100.0
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 7.8e-253 876.7 458 98.3
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 6.2e-250 867.1 461 96.7
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 3.9e-244 847.8 461 93.7
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.1e-233 813.1 432 96.8
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.8e-233 812.4 432 96.8
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 2.2e-199 699.1 471 75.6
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 5.0e-199 698.0 475 74.3
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 6.5e-199 697.6 475 74.9
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 8.2e-186 654.1 465 71.2
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 1.2e-181 640.2 466 69.3
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 1.6e-181 639.8 465 69.2
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 1.4e-180 636.7 465 69.9
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 2.2e-178 629.4 465 69.2
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 1.4e-177 626.7 462 66.7
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 2.4e-177 625.9 471 67.7
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 2.9e-175 619.0 461 66.8
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 3.2e-174 615.5 463 65.9
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 6.3e-170 601.3 462 65.2
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 1.1e-169 600.5 466 65.0
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 2.7e-168 595.9 465 64.3
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 3.5e-168 595.5 466 63.3
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 7.7e-168 594.3 513 60.4
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 2.9e-167 592.4 468 63.9
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 8.5e-167 590.9 468 65.2
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 4.2e-166 588.6 465 65.8
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 7.2e-166 587.8 449 66.6
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 7.2e-166 587.8 462 64.5
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 1.2e-165 587.0 465 65.4
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 2.0e-163 579.7 464 61.6
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 9.8e-163 577.4 461 63.3
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 1.3e-162 577.0 468 63.5
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 1.3e-162 577.0 465 62.4
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 2.2e-162 576.2 465 63.4
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 2.2e-162 576.2 465 63.4
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 4.9e-162 575.1 465 63.2
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 4.1e-161 572.0 448 64.3
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 1.2e-160 570.5 468 62.8
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 1.0e-159 567.4 460 63.3
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 3.8e-159 565.5 462 61.9
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 1.1e-158 563.9 469 61.6
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 2.3e-156 556.2 465 60.9
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 6.8e-156 554.7 467 60.8
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 1.5e-155 553.5 464 59.9
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 5.7e-155 551.6 463 62.6
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 2.9e-154 549.3 459 60.8
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.8e-153 546.6 459 60.1
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 4.1e-153 545.4 462 61.0
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 5.4e-153 545.0 461 58.8
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 7.8e-152 541.2 465 58.1
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 1.0e-151 540.8 460 59.3
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.0e-151 540.8 462 58.7
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 1.3e-151 540.4 449 60.1
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 2.3e-151 539.7 466 57.9
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 3.0e-151 539.3 465 59.8
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 1.2e-149 533.9 456 59.4
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 4.7e-149 531.9 462 58.0
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 8.0e-149 531.2 461 57.0
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 3.1e-148 529.3 464 58.4
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 4.0e-148 528.9 462 57.1
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 5.2e-148 528.5 465 59.1
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 6.8e-148 528.1 463 57.2
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 1.2e-147 527.3 463 57.2
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 2.6e-147 526.2 460 59.3
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 9.8e-147 524.2 463 56.8
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 2.2e-146 523.1 466 58.8
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 3.7e-146 522.3 463 56.8
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 4.9e-146 521.9 464 57.5
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 1.1e-145 520.8 465 56.6
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 1.1e-145 520.8 463 56.2
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 1.1e-145 520.8 449 57.7
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 2.4e-145 519.6 464 55.8
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 3.2e-145 519.2 458 58.3
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 7.0e-145 518.1 460 58.7
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 2.7e-144 516.2 460 56.5
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 2.7e-144 516.2 453 58.5
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 6.0e-144 515.0 467 56.7
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 7.8e-144 514.6 463 56.4
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 3.0e-143 512.7 460 56.3
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 5.0e-143 511.9 465 56.3
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 6.6e-143 511.5 497 54.3
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 1.6e-141 506.9 448 56.5
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 3.1e-140 502.7 449 58.8
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 6.4e-138 495.0 459 56.4
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 1.4e-137 493.8 453 55.6
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 3.5e-136 489.2 464 54.1
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 4.6e-136 488.8 468 53.4
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 3.3e-134 482.6 417 59.0
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 5.2e-132 475.3 466 52.8
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 2.9e-130 469.5 460 53.3
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 1.7e-127 460.3 422 57.6
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 6.6e-127 458.4 463 50.3
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.1e-125 453.4 463 50.5
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 8.1e-125 451.4 420 55.7
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.4e-124 450.7 461 50.1
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.0e-123 446.8 461 49.9
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 5.8e-123 445.3 421 58.9
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 4.9e-122 442.2 459 50.3
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 1.1e-121 441.0 438 51.6
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 2.8e-117 426.4 494 46.6
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 8.1e-117 424.9 437 51.0
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 4.5e-115 419.1 457 47.0
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 1.5e-110 404.1 454 48.2
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 1.6e-109 400.6 491 44.8
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 1.0e-95 354.8 296 60.8
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.3e-95 354.4 353 51.3
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 1.3e-95 354.4 353 51.3
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 1.4e-89 334.3 432 40.5
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 9.3e-89 331.6 278 59.7
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 5.9e-83 312.4 438 39.5
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 1.6e-80 304.3 516 37.4
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 3.6e-80 303.1 483 37.7
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 2.0e-78 297.4 472 39.2
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 1.3e-61 241.5 323 46.1
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 9.1e-60 235.3 137 87.6
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 1.2e-59 235.0 516 32.9
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 4.0e-55 219.9 476 33.0
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 5.4e-52 209.5 117 88.0
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.6e-43 181.4 192 47.9
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 1.7e-42 177.9 357 33.3
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 2.0e-38 164.5 162 50.6
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 7.5e-38 162.5 162 50.0
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 2.2e-37 161.0 350 33.1
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 6.2e-32 142.9 331 30.8
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 8.0e-32 142.5 105 63.8
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.8e-31 141.4 135 48.1
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.8e-31 141.4 135 48.1
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 6.8e-31 139.4 442 24.9
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.0e-30 137.9 219 38.4
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.6e-30 137.5 132 47.7
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 7.3e-25 119.4 296 29.1
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 1.2e-24 118.6 217 38.7
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 6.6e-18 96.3 124 41.1
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 4.9e-13 80.1 168 33.9
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 3.2e-12 77.4 88 46.6
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 5.4e-12 76.6 88 46.6
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 5.1e-10 70.1 39 76.9
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 5.1e-10 70.1 38 78.9
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.8e-08 64.3 66 48.5
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 5.2e-07 60.1 73 41.1


User provided reference genes

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