Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g06390 Fragaria vesca HOM05D007850 ORTHO05D009594 1.6e-36 155.6 79 100.0
FAN19G1200 Fragaria x ananassa HOM05D007850 ORTHO05D009594 1.6e-36 155.6 79 100.0
FAN26G0602 Fragaria x ananassa HOM05D007850 ORTHO05D009594 3.5e-36 154.5 79 98.7
FAN26G2005 Fragaria x ananassa HOM05D007850 ORTHO05D009594 3.5e-36 154.5 79 98.7
FAN23G2338 Fragaria x ananassa HOM05D007850 ORTHO05D009594 6.0e-36 153.7 78 97.4
FAN28G1089 Fragaria x ananassa HOM05D007850 ORTHO05D009594 7.8e-36 153.3 79 97.5
RcHm_v2.0_Chr2g0092131 Rosa chinensis HOM05D007850 ORTHO05D009594 2.5e-34 148.3 79 94.9
Prupe.7G218200 Prunus persica HOM05D007850 ORTHO05D009594 5.2e-24 114.0 75 76.0
Duzib168G0149 Durio zibethinus HOM05D007850 ORTHO05D009594 3.9e-19 97.8 69 72.5
Gohir.D06G066600 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.1e-18 96.3 70 65.7
Gohir.D07G009300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 1.9e-18 95.5 69 69.6
Gorai.001G009500 Gossypium raimondii HOM05D007850 ORTHO05D009594 1.9e-18 95.5 69 69.6
Gohir.A07G009000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 3.3e-18 94.7 69 69.6
CANSAT56G2953 Cannabis sativa HOM05D007850 ORTHO05D009594 5.6e-18 94.0 68 72.1
Gorai.010G078100 Gossypium raimondii HOM05D007850 ORTHO05D009594 5.6e-18 94.0 70 64.3
Cfa003164 Carpinus fangiana HOM05D007850 ORTHO05D009594 9.6e-18 93.2 75 66.7
Gohir.A06G068000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 9.6e-18 93.2 70 67.1
Potri.015G106700 Populus trichocarpa HOM05D007850 ORTHO05D009594 1.3e-17 92.8 74 63.5
Thecc.09G099000 Theobroma cacao HOM05D007850 ORTHO05D009594 1.6e-17 92.4 69 69.6
Gohir.D08G264200 Gossypium hirsutum HOM05D007850 ORTHO05D009594 2.8e-17 91.7 77 64.9
Gorai.004G282100 Gossypium raimondii HOM05D007850 ORTHO05D009594 2.8e-17 91.7 77 64.9
Manes.03G028100 Manihot esculenta HOM05D007850 ORTHO05D009594 3.6e-17 91.3 75 64.0
Haze_25835 Corylus avellana HOM05D007850 ORTHO05D009594 4.8e-17 90.9 75 65.3
Cpa.g.sc78.26 Carica papaya HOM05D007850 ORTHO05D009594 1.4e-16 89.4 70 64.3
Gohir.A08G243300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 2.4e-16 88.6 77 63.6
Sabra12G0079700 Salix brachista HOM05D007850 ORTHO05D009594 2.4e-16 88.6 70 65.7
Lalb_Chr22g0352511 Lupinus albus HOM05D007850 ORTHO05D009594 1.2e-15 86.3 66 63.6
MELO3C015421.2 Cucumis melo HOM05D007850 ORTHO05D009594 2.0e-15 85.5 78 60.3
ClCG03G016060 Citrullus lanatus HOM05D007850 ORTHO05D009594 2.6e-15 85.1 74 66.2
Nn8g39046 Nelumbo nucifera HOM05D007850 ORTHO05D009594 2.6e-15 85.1 76 57.9
Hma1.2p1_0208F.1_g088080 Hydrangea macrophylla HOM05D007850 ORTHO05D009594 7.6e-15 83.6 71 64.8
arahy.Tifrunner.gnm1.ann1.X02Y3Q Arachis hypogaea HOM05D007850 ORTHO05D009594 2.2e-14 82.0 74 56.8
Rhsim05G0038300 Rhododendron simsii HOM05D007850 ORTHO05D009594 2.9e-14 81.6 74 58.1
Psat1g048160 Pisum sativum HOM05D007850 ORTHO05D009594 3.8e-14 81.3 74 58.1
Eucgr.K01055 Eucalyptus grandis HOM05D007850 ORTHO05D009594 4.9e-14 80.9 74 62.2
Glyma.07G125500 Glycine max HOM05D007850 ORTHO05D009594 1.1e-13 79.7 74 59.5
arahy.Tifrunner.gnm1.ann1.X1KXE8 Arachis hypogaea HOM05D012186 ORTHO05D009594 1.9e-13 79.0 66 60.6
Cc06_g10600 Coffea canephora HOM05D007850 ORTHO05D009594 2.4e-13 78.6 73 56.2
SalBow6G1226 Salvia bowleyana HOM05D007850 ORTHO05D009594 3.2e-13 78.2 74 59.5
Ca_25585_v3 Cicer arietinum L. HOM05D007850 ORTHO05D009594 4.2e-13 77.8 74 55.4
Actinidia17514 Actinidia chinensis HOM05D007850 ORTHO05D009594 5.4e-13 77.4 67 59.7
Glyma.01G006200 Glycine max HOM05D007850 ORTHO05D009594 5.4e-13 77.4 74 59.5
TAR624G0098 Trochodendron aralioides HOM05D007850 ORTHO05D009594 5.4e-13 77.4 79 55.7
Nitab4.5_0003079g0010 Nicotiana tabacum HOM05D007850 ORTHO05D009594 9.3e-13 76.6 69 62.3
QL08p048105 Quercus lobata HOM05D007850 ORTHO05D009594 9.3e-13 76.6 75 60.0
AUR62010878 Chenopodium quinoa HOM05D007850 ORTHO05D009594 2.1e-12 75.5 74 56.8
TPR.G33528 Trifolium pratense HOM05D007850 ORTHO05D009594 2.1e-12 75.5 77 54.5
Phvul.004G174800 Phaseolus vulgaris HOM05D007850 ORTHO05D009594 2.7e-12 75.1 74 58.1
CSS0000041 Camellia sinensis var. sinensis HOM05D007850 ORTHO05D009594 3.5e-12 74.7 75 61.3
Nitab4.5_0000566g0200 Nicotiana tabacum HOM05D007850 ORTHO05D009594 3.5e-12 74.7 75 57.3
AUR62021391 Chenopodium quinoa HOM05D007850 ORTHO05D009594 6.0e-12 73.9 74 55.4
COL.COLO4_34726 Corchorus olitorius HOM05D007850 ORTHO05D009594 6.0e-12 73.9 56 71.4
QL03p050300 Quercus lobata HOM05D007850 ORTHO05D009594 1.3e-11 72.8 69 59.4
Ciclev10010071m.g Citrus clementina HOM05D007850 ORTHO05D009594 1.1e-10 69.7 74 56.8
Lj2g0008653 Lotus japonicus HOM05D007850 ORTHO05D009594 1.5e-10 69.3 79 51.9
Medtr6g090490 Medicago truncatula HOM05D007850 ORTHO05D009594 1.9e-10 68.9 74 52.7
CsaV3_1G039900 Cucumis sativus L. HOM05D007850 ORTHO05D009594 2.5e-10 68.6 63 60.3
Sc18g0001560 Simmondsia chinensis HOM05D007850 ORTHO05D009594 2.5e-10 68.6 54 64.8
Sed0003200 Sechium edule HOM05D007850 ORTHO05D009594 4.3e-10 67.8 67 62.7
Ciclev10006350m.g Citrus clementina HOM05D007850 ORTHO05D009594 5.6e-10 67.4 71 56.3
Peaxi162Scf00944g00009 Petunia axillaris HOM05D007850 ORTHO05D009594 5.6e-10 67.4 74 54.1
Solyc12g008560.1 Solanum lycopersicum HOM05D007850 ORTHO05D009594 5.6e-10 67.4 69 56.5
unitig_8.g4473 Utricularia gibba HOM05D007850 ORTHO05D009594 5.6e-10 67.4 68 58.8
EL10Ac8g18368 Beta vulgaris HOM05D007850 ORTHO05D009594 9.6e-10 66.6 74 51.4
PGSC0003DMG400000292 Solanum tuberosum HOM05D007850 ORTHO05D009594 9.6e-10 66.6 71 54.9
Aqoxy7G01385 Aquilegia oxysepala HOM05D007850 ORTHO05D009594 1.6e-09 65.9 77 49.4
SEGI_13362 Sequoiadendron giganteum HOM05D007850 ORTHO05D009594 3.7e-09 64.7 76 48.7
CAN.G1591.18 Capsicum annuum HOM05D007850 ORTHO05D009594 8.1e-09 63.5 76 47.4
CAN.G2021.4 Capsicum annuum HOM05D007850 ORTHO05D009594 8.1e-09 63.5 76 47.4
Ah.09g230500 Amaranthus hybridus HOM05D007850 ORTHO05D009594 4.0e-08 61.2 77 46.8
Sopen12g003500 Solanum pennellii HOM05D007850 ORTHO05D009594 4.0e-08 61.2 61 54.1
CAN.G1677.12 Capsicum annuum HOM05D007850 ORTHO05D009594 5.3e-08 60.8 76 46.1
CAN.G1357.32 Capsicum annuum HOM05D007850 ORTHO05D009594 1.2e-07 59.7 76 46.1
DCAR_000091 Daucus carota HOM05D007850 ORTHO05D009594 1.5e-07 59.3 75 48.0
DCAR_012032 Daucus carota HOM05D007850 ORTHO05D009594 1.5e-07 59.3 75 48.0
DCAR_012035 Daucus carota HOM05D007850 ORTHO05D009594 1.5e-07 59.3 75 48.0
Lsat_1_v5_gn_7_39541 Lactuca sativa HOM05D007850 ORTHO05D009594 1.5e-07 59.3 52 57.7
CAN.G1349.15 Capsicum annuum HOM05D007850 ORTHO05D009594 4.5e-07 57.8 76 44.7
CAN.G1084.1 Capsicum annuum HOM05D007850 ORTHO05D009594 7.6e-07 57.0 76 44.7
ATR0705G131 Amborella trichopoda HOM05D007850 ORTHO05D009594 1.7e-06 55.8 73 42.5
ECA240G2374 Erigeron canadensis HOM05D004751 ORTHO05D005819 8.4e-06 53.5 61 52.5


User provided reference genes

Program Settings