Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g06280 Fragaria vesca HOM05D008202 ORTHO05D010302 2.0e-43 178.7 93 100.0
FAN19G1093 Fragaria x ananassa HOM05D008202 ORTHO05D010302 2.0e-43 178.7 93 100.0
FAN23G0175 Fragaria x ananassa HOM05D008202 ORTHO05D010302 2.5e-41 171.8 93 94.6
FAN26G0167 Fragaria x ananassa HOM05D008202 ORTHO05D010302 4.3e-25 117.9 61 96.7
FAN26G3206 Fragaria x ananassa HOM05D008202 ORTHO05D010302 4.3e-25 117.9 61 96.7
FAN28G0380 Fragaria x ananassa HOM05D008202 ORTHO05D010302 1.7e-21 105.9 62 91.9
Prupe.7G218700 Prunus persica HOM05D008202 ORTHO05D010302 3.0e-18 95.1 100 59.0
RcHm_v2.0_Chr2g0091981 Rosa chinensis HOM05D008202 ORTHO05D010302 5.1e-18 94.4 53 88.7
Ciclev10010342m.g Citrus clementina HOM05D008202 ORTHO05D010302 6.2e-16 87.4 65 69.2
MD02G1066600 Malus domestica HOM05D008202 ORTHO05D010302 5.2e-15 84.3 93 57.0
CiPaw.04G157000 Carya illinoinensis HOM05D008202 ORTHO05D010302 2.6e-14 82.0 97 53.6
Ciclev10027258m.g Citrus clementina HOM05D008202 ORTHO05D010302 5.8e-14 80.9 65 64.6
Dinv42250 Davidia involucrata HOM05D008202 ORTHO05D010302 5.8e-14 80.9 95 52.6
TWI63G1052 Tripterygium wilfordii HOM05D008202 ORTHO05D010302 1.3e-13 79.7 89 51.7
Haze_25829 Corylus avellana HOM05D008202 ORTHO05D010302 1.7e-13 79.3 93 49.5
CiPaw.04G155900 Carya illinoinensis HOM05D008202 ORTHO05D010302 2.9e-13 78.6 97 52.6
Thecc.09G099700 Theobroma cacao HOM05D008202 ORTHO05D010302 4.9e-13 77.8 99 48.5
Peaxi162Scf00720g00418 Petunia axillaris HOM05D008202 ORTHO05D010302 1.1e-12 76.6 58 69.0
Manes.03G026600 Manihot esculenta HOM05D008202 ORTHO05D010302 2.4e-12 75.5 91 50.5
Oeu018577.1 Olea europaea HOM05D008202 ORTHO05D010302 3.2e-12 75.1 95 48.4
Actinidia39781 Actinidia chinensis HOM05D008202 ORTHO05D010302 4.2e-12 74.7 92 50.0
Hma1.2p1_0386F.1_g141760 Hydrangea macrophylla HOM05D008202 ORTHO05D010302 4.2e-12 74.7 95 51.6
DCAR_028656 Daucus carota HOM05D008202 ORTHO05D010302 5.4e-12 74.3 88 51.1
HanXRQChr12g0358111 Helianthus annuus HOM05D008202 ORTHO05D010302 7.1e-12 73.9 92 50.0
EL10Ac8g18376 Beta vulgaris HOM05D008202 ORTHO05D010302 9.3e-12 73.6 84 52.4
Ah.14g083220 Amaranthus hybridus HOM05D008202 ORTHO05D010302 3.5e-11 71.6 74 51.4
Lsat_1_v5_gn_8_98261 Lactuca sativa HOM05D008202 ORTHO05D010302 7.8e-11 70.5 91 47.3
Actinidia17520 Actinidia chinensis HOM05D008202 ORTHO05D010302 1.0e-10 70.1 91 47.3
Cc06_g10540 Coffea canephora HOM05D008202 ORTHO05D010302 1.0e-10 70.1 94 44.7
Dinv36682 Davidia involucrata HOM05D008202 ORTHO05D010302 1.0e-10 70.1 57 63.2
Migut.K00545 Erythranthe guttata HOM05D008202 ORTHO05D010302 1.7e-10 69.3 95 48.4
SGA_v2.0_scaffold512G52633 Striga asiatica HOM05D008202 ORTHO05D010302 1.7e-10 69.3 97 45.4
Ah.14g082540 Amaranthus hybridus HOM05D008202 ORTHO05D010302 2.3e-10 68.9 67 50.7
Rhsim05G0039400 Rhododendron simsii HOM05D008202 ORTHO05D010302 2.3e-10 68.9 59 55.9
Sc18g0001520 Simmondsia chinensis HOM05D008202 ORTHO05D010302 3.9e-10 68.2 92 45.7
PGSC0003DMG400046448 Solanum tuberosum HOM05D001685 ORTHO05D006653 3.9e-10 68.2 86 51.2
Solyc04g058130.3 Solanum lycopersicum HOM05D008202 ORTHO05D010302 5.1e-10 67.8 86 51.2
AUR62010887 Chenopodium quinoa HOM05D008202 ORTHO05D010302 6.6e-10 67.4 72 50.0
Gorai.010G077500 Gossypium raimondii HOM05D008202 ORTHO05D010302 6.6e-10 67.4 91 46.2
vmacro10849 Vaccinium macrocarpon HOM05D008202 ORTHO05D010302 6.6e-10 67.4 79 49.4
MSTRG.19550 Avicennia marina HOM05D008202 ORTHO05D010302 8.7e-10 67.0 95 42.1
CSS0001567 Camellia sinensis var. sinensis HOM05D008202 ORTHO05D010302 8.7e-10 67.0 89 47.2
AUR62021399 Chenopodium quinoa HOM05D008202 ORTHO05D010302 8.7e-10 67.0 72 50.0
Gohir.A06G067500 Gossypium hirsutum HOM05D008202 ORTHO05D010302 8.7e-10 67.0 85 48.2
Ciclev10027039m.g Citrus clementina HOM05D008202 ORTHO05D010302 1.5e-09 66.2 100 49.0
Manes.04G125801 Manihot esculenta HOM05D008202 ORTHO05D010302 1.9e-09 65.9 85 48.2
Manes.13G078801 Manihot esculenta HOM05D008202 ORTHO05D010302 1.9e-09 65.9 85 48.2
Medtr6g088800 Medicago truncatula HOM05D008202 ORTHO05D010302 2.5e-09 65.5 56 58.9
COL.COLO4_34733 Corchorus olitorius HOM05D008202 ORTHO05D010302 3.3e-09 65.1 57 57.9
Nn8g39054 Nelumbo nucifera HOM05D008202 ORTHO05D010302 7.3e-09 63.9 94 47.9
Atru.chr7.1471 Acer truncatum HOM05D008202 ORTHO05D010302 2.8e-08 62.0 89 42.7
CDE08G1102 Ceratophyllum demersum HOM05D008202 ORTHO05D010302 3.6e-08 61.6 53 52.8
GSVIVG01015295001 Vitis vinifera HOM05D008202 ORTHO05D010302 6.2e-08 60.8 91 47.3
Psat1g048280 Pisum sativum HOM05D008202 ORTHO05D010302 8.1e-08 60.5 46 58.7
Gohir.D06G066100 Gossypium hirsutum HOM05D008202 ORTHO05D010302 1.1e-07 60.1 91 44.0
CsaV3_2G001850 Cucumis sativus L. HOM05D008202 ORTHO05D010302 1.4e-07 59.7 60 51.7
Lalb_Chr14g0371911 Lupinus albus HOM05D008202 ORTHO05D010302 2.4e-07 58.9 53 52.8
ClCG11G002070 Citrullus lanatus HOM05D008202 ORTHO05D010302 3.1e-07 58.5 42 59.5
Eucgr.C03726 Eucalyptus grandis HOM05D008202 ORTHO05D010302 5.3e-07 57.8 90 38.9
CAN.G1325.3 Capsicum annuum HOM05D001685 ORTHO05D006653 9.0e-07 57.0 81 43.2
MBI01_g10122_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 1.2e-06 56.6 69 43.5
MD15G1197100 Malus domestica HOM05D008202 ORTHO05D010302 3.4e-06 55.1 83 42.2
Nitab4.5_0002557g0010 Nicotiana tabacum HOM05D001685 ORTHO05D006653 4.4e-06 54.7 82 46.3
HPP92_009087 Vanilla planifolia HOM05D008202 ORTHO05D010302 4.4e-06 54.7 97 38.1
ATR0705G156 Amborella trichopoda HOM05D008202 ORTHO05D010302 7.6e-06 53.9 42 54.8


User provided reference genes

Program Settings