Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 4.7e-101 371.3 205 100.0
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.0e-100 368.2 205 99.0
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.1e-97 358.2 216 93.5
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 9.2e-97 357.1 206 96.6
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.0e-96 354.4 207 95.2
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.1e-92 342.0 216 89.8
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 2.1e-72 276.2 167 90.4
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.7e-45 186.8 214 57.9
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 1.8e-44 183.3 216 60.6
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 2.4e-44 183.0 212 60.4
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 3.1e-44 182.6 212 62.7
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 7.7e-43 177.9 219 61.2
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 7.7e-43 177.9 215 58.1
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 5.0e-42 175.3 218 57.8
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 7.2e-41 171.4 210 52.4
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 4.7e-40 168.7 215 52.6
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 4.7e-40 168.7 206 54.9
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.8e-39 166.8 214 55.6
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 5.2e-39 165.2 207 55.1
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 2.0e-38 163.3 207 56.0
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 5.7e-38 161.8 232 53.0
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 6.3e-37 158.3 215 54.9
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 1.4e-36 157.1 207 51.7
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.4e-36 156.4 204 53.4
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.2e-35 154.1 216 54.6
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 1.6e-35 153.7 212 52.4
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.3e-34 150.6 211 57.8
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.7e-34 150.2 216 51.9
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.7e-34 150.2 216 51.9
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 1.7e-34 150.2 210 51.9
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 5.0e-34 148.7 207 50.2
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.5e-33 147.1 206 51.5
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.9e-33 146.7 212 52.8
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 5.5e-33 145.2 217 51.6
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 5.5e-33 145.2 212 49.1
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 5.5e-33 145.2 219 53.0
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 9.4e-33 144.4 212 50.5
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 2.7e-32 142.9 215 50.7
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 3.6e-32 142.5 209 51.7
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 4.7e-32 142.1 219 52.5
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 4.7e-32 142.1 212 48.1
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 6.1e-32 141.7 220 51.8
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 8.0e-32 141.4 210 53.8
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 8.0e-32 141.4 212 49.1
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 8.0e-32 141.4 209 50.2
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 8.0e-32 141.4 214 53.3
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 1.0e-31 141.0 212 48.6
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.8e-31 140.2 207 49.8
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.8e-31 140.2 220 48.6
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 1.8e-31 140.2 210 47.1
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 4.0e-31 139.0 215 49.8
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 2.0e-30 136.7 206 49.5
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 2.6e-30 136.3 208 52.4
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 7.5e-30 134.8 217 53.5
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 7.5e-30 134.8 219 46.6
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 9.7e-30 134.4 160 55.0
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 1.3e-29 134.0 214 49.5
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.3e-29 134.0 223 45.7
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.8e-29 132.9 214 47.2
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 8.2e-29 131.3 206 46.6
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.1e-28 131.0 210 51.9
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.4e-28 129.8 212 50.9
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.1e-28 129.4 212 47.2
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 3.1e-28 129.4 212 53.3
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.1e-28 129.0 214 51.9
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 7.0e-28 128.3 212 45.8
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 7.0e-28 128.3 186 48.9
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 1.2e-27 127.5 217 52.1
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 1.6e-27 127.1 223 47.1
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 3.5e-27 125.9 218 48.6
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 3.5e-27 125.9 209 45.9
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 4.5e-27 125.6 210 50.0
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 7.7e-27 124.8 221 48.0
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 7.7e-27 124.8 214 49.5
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.0e-26 124.4 213 48.8
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.0e-26 124.4 218 47.7
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.3e-26 124.0 214 49.5
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 1.7e-26 123.6 210 47.1
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 1.7e-26 123.6 235 43.0
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 2.2e-26 123.2 204 47.5
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 2.9e-26 122.9 207 44.4
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 2.9e-26 122.9 185 47.0
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 3.8e-26 122.5 213 47.9
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 8.5e-26 121.3 205 48.8
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.1e-25 120.9 214 50.0
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 1.1e-25 120.9 214 50.0
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 4.2e-25 119.0 207 46.9
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 9.4e-25 117.9 224 49.1
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 2.1e-24 116.7 212 41.5
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 2.1e-24 116.7 213 41.8
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 2.1e-24 116.7 213 41.8
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 2.1e-24 116.7 213 49.8
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 6.1e-24 115.2 211 45.0
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 6.1e-24 115.2 222 46.4
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 1.0e-23 114.4 211 45.0
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 1.4e-23 114.0 213 41.3
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 1.4e-23 114.0 213 41.3
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 5.2e-23 112.1 210 43.8
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 5.2e-23 112.1 211 43.1
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 6.8e-23 111.7 210 42.4
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 6.8e-23 111.7 210 42.4
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 6.8e-23 111.7 207 45.4
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 8.8e-23 111.3 211 44.1
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.2e-22 110.9 211 44.5
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 1.5e-22 110.5 210 41.9
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.0e-22 110.2 212 45.3
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 2.0e-22 110.2 210 47.6
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 2.2e-21 106.7 217 48.4
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 6.3e-21 105.1 223 49.3
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 7.0e-20 101.7 182 44.5
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 7.0e-20 101.7 216 38.9
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.6e-19 100.5 200 40.5
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 3.5e-19 99.4 181 42.0
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 4.5e-19 99.0 178 46.1
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 5.9e-19 98.6 217 45.2
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 1.3e-18 97.4 214 46.7
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 3.8e-18 95.9 214 46.3
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 5.0e-18 95.5 168 42.9
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 5.0e-18 95.5 207 43.5
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 5.0e-18 95.5 212 40.6
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.5e-17 94.0 170 48.8
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 1.5e-17 94.0 118 51.7
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 1.9e-17 93.6 202 38.6
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 4.2e-17 92.4 212 42.9
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 4.2e-17 92.4 205 39.5
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 7.2e-17 91.7 202 43.6
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 7.2e-17 91.7 134 49.3
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 1.6e-16 90.5 218 41.7
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.6e-16 90.5 208 35.6
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 2.8e-16 89.7 188 41.5
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 2.8e-16 89.7 171 46.8
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 3.6e-16 89.4 209 39.7
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 3.6e-16 89.4 169 46.7
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 3.6e-16 89.4 128 50.8
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 4.7e-16 89.0 182 50.0
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 6.1e-16 88.6 216 41.7
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 6.1e-16 88.6 215 43.3
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 8.0e-16 88.2 210 40.0
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-15 87.4 213 36.2
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 3.0e-15 86.3 212 41.0
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 4.0e-15 85.9 214 36.4
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 8.8e-15 84.7 208 38.5
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.0e-14 83.6 209 40.2
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 2.6e-14 83.2 204 40.2
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 3.4e-14 82.8 212 35.8
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.8e-13 79.7 142 45.8
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 2.8e-13 79.7 211 37.4
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.1e-12 77.8 186 38.7
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 1.4e-12 77.4 210 37.6
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 1.4e-12 77.4 219 38.4
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 3.1e-12 76.3 219 38.8
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 3.1e-12 76.3 112 47.3
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 3.1e-12 76.3 219 38.8
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 5.4e-12 75.5 133 43.6
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 9.2e-12 74.7 177 39.0
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.6e-11 73.9 146 46.6
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 3.5e-11 72.8 202 38.6
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 5.9e-11 72.0 211 38.9
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 1.0e-10 71.2 151 38.4
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 1.9e-09 67.0 62 66.1
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 1.9e-09 67.0 131 48.9
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 1.9e-09 67.0 182 33.5
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 3.3e-09 66.2 83 60.2
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 3.3e-09 66.2 180 37.2
HPP92_024624 Vanilla planifolia HOM05D003644 ORTHO05D004305 4.3e-09 65.9 209 34.4
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 7.3e-09 65.1 121 45.5
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 2.1e-08 63.5 127 48.8
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 2.8e-08 63.2 222 31.5
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 4.7e-08 62.4 126 38.1
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 8.0e-08 61.6 99 48.5
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 1.4e-07 60.8 210 34.8
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 1.4e-07 60.8 81 46.9
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 1.8e-07 60.5 76 56.6
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 3.4e-06 56.2 30 83.3
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 3.4e-06 56.2 213 31.9
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 4.4e-06 55.8 135 41.5
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 5.7e-06 55.5 173 34.7


User provided reference genes

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