Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 1.1e-116 423.3 212 100.0
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.0e-114 415.2 210 98.6
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.5e-113 412.9 210 97.6
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 7.3e-113 410.6 210 97.1
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 6.8e-111 404.1 210 94.8
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 6.0e-99 364.4 210 83.8
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.3e-98 363.2 210 82.4
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 5.1e-98 361.3 211 82.5
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 1.5e-97 359.8 210 83.3
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 1.9e-97 359.4 207 85.5
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 3.3e-97 358.6 210 82.4
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 4.3e-97 358.2 206 83.0
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 5.6e-97 357.8 206 84.0
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 9.6e-97 357.1 209 82.3
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 1.2e-96 356.7 212 81.1
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 1.6e-96 356.3 206 82.5
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 4.7e-96 354.8 210 81.0
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 6.2e-96 354.4 209 81.3
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 6.2e-96 354.4 211 81.5
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 1.1e-95 353.6 211 81.0
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 1.1e-95 353.6 212 80.7
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.4e-95 353.2 206 81.1
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.4e-95 353.2 209 79.9
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 1.8e-95 352.8 209 80.4
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 4.0e-95 351.7 209 79.9
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 8.9e-95 350.5 209 81.8
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 1.5e-94 349.7 209 78.9
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 2.0e-94 349.4 209 78.9
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 2.0e-94 349.4 209 79.4
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 2.0e-94 349.4 209 80.4
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 2.6e-94 349.0 209 79.4
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 4.4e-94 348.2 206 79.6
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 4.4e-94 348.2 209 82.3
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 7.6e-94 347.4 209 79.9
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 7.6e-94 347.4 206 80.1
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 7.6e-94 347.4 210 78.1
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 9.9e-94 347.1 209 79.9
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 1.7e-93 346.3 211 78.7
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 3.8e-93 345.1 209 78.5
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 8.4e-93 344.0 209 77.0
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.4e-92 343.2 211 78.7
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.4e-92 343.2 209 78.5
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 3.2e-92 342.0 207 78.3
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 4.2e-92 341.7 209 77.0
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 2.1e-91 339.3 208 78.4
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 2.1e-91 339.3 206 79.6
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 2.1e-91 339.3 205 80.0
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 3.5e-91 338.6 209 76.1
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 1.0e-90 337.0 213 78.9
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 1.3e-90 336.7 215 75.3
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 1.7e-90 336.3 206 78.6
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 1.7e-90 336.3 205 77.6
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 3.0e-90 335.5 209 77.0
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 5.1e-90 334.7 211 76.3
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 8.7e-90 334.0 211 76.3
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 1.1e-89 333.6 205 79.5
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.5e-89 333.2 230 70.9
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 1.9e-89 332.8 211 75.4
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 1.9e-89 332.8 209 76.1
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 2.5e-89 332.4 205 77.6
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 7.3e-89 330.9 208 75.0
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.3e-88 330.1 211 76.8
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 1.6e-88 329.7 206 75.7
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 2.1e-88 329.3 209 75.6
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 3.6e-88 328.6 206 76.7
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 4.8e-88 328.2 206 76.7
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 6.2e-88 327.8 206 76.7
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 6.2e-88 327.8 206 76.7
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 6.2e-88 327.8 206 76.7
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 1.4e-87 326.6 206 76.2
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 2.4e-87 325.9 206 76.7
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 3.1e-87 325.5 206 76.2
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 3.1e-87 325.5 206 76.2
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 4.0e-87 325.1 206 75.2
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 4.0e-87 325.1 206 76.2
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 1.2e-86 323.6 206 75.7
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 2.0e-86 322.8 206 74.8
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 2.6e-86 322.4 211 72.5
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 3.4e-86 322.0 209 74.2
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 1.3e-85 320.1 206 74.8
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.3e-85 320.1 203 75.9
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 1.7e-85 319.7 206 74.8
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 2.9e-85 318.9 212 73.1
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 6.4e-85 317.8 215 72.1
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 8.4e-85 317.4 208 73.6
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 1.9e-84 316.2 207 73.4
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 1.9e-84 316.2 210 72.4
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 3.5e-83 312.0 203 71.4
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 4.6e-83 311.6 210 74.3
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 5.1e-82 308.1 186 76.9
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 8.7e-82 307.4 210 72.4
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 1.1e-81 307.0 210 69.5
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 1.9e-81 306.2 178 87.1
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 9.6e-81 303.9 212 67.9
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 2.8e-80 302.4 214 69.6
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 6.4e-77 291.2 203 66.5
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 1.6e-75 286.6 207 67.1
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 7.9e-75 284.3 208 68.3
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 1.0e-74 283.9 191 73.3
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 2.3e-74 282.7 173 75.7
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 3.9e-74 282.0 203 67.0
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 2.5e-73 279.3 203 66.5
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 1.1e-71 273.9 167 76.0
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 5.3e-71 271.6 166 75.9
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 2.2e-69 266.2 157 80.9
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 8.7e-66 254.2 157 76.4
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 4.1e-63 245.4 157 76.4
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 6.9e-63 244.6 254 50.4
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 2.6e-62 242.7 193 62.7
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 3.7e-56 222.2 137 73.7
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 1.1e-55 220.7 211 50.7
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 3.8e-53 212.2 182 57.7
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.1e-52 210.7 208 51.4
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 7.2e-52 208.0 157 65.6
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 4.1e-47 192.2 130 70.8
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 4.1e-47 192.2 130 70.8
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 1.5e-46 190.3 142 66.2
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 8.5e-45 184.5 210 50.0
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 2.0e-38 163.3 223 40.8
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 2.0e-38 163.3 223 40.8
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 2.0e-38 163.3 95 83.2
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 3.4e-25 119.4 196 35.7
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 9.1e-23 111.3 96 62.5
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 2.5e-20 103.2 87 59.8
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 5.2e-18 95.5 65 64.6
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 9.8e-17 91.3 53 81.1
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 9.8e-17 91.3 52 82.7
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 1.4e-15 87.4 72 62.5
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 9.2e-15 84.7 48 81.2
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.5e-14 82.8 57 64.9
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 3.5e-14 82.8 53 77.4
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 1.2e-11 74.3 38 92.1
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 2.0e-09 67.0 48 64.6
arahy.Tifrunner.gnm1.ann1.43H8SX Arachis hypogaea HOM05D000371 ORTHO05D013217 1.3e-08 64.3 39 69.2
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 8.3e-08 61.6 39 76.9
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 1.8e-07 60.5 134 35.1
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 4.1e-07 59.3 39 76.9
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 5.4e-07 58.9 33 78.8
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 4.6e-06 55.8 36 63.9


User provided reference genes

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