Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g05581 Fragaria vesca HOM05D005048 ORTHO05D198222 1.7e-57 225.7 110 100.0
MD02G1057100 Malus domestica HOM05D005048 ORTHO05D006420 8.4e-12 73.9 124 43.5
RcHm_v2.0_Chr2g0091251 Rosa chinensis HOM05D005048 ORTHO05D006420 8.4e-12 73.9 125 42.4
FAN19G2567 Fragaria x ananassa HOM05D005048 ORTHO05D006420 1.4e-11 73.2 96 49.0
FAN26G3268 Fragaria x ananassa HOM05D005048 ORTHO05D006420 1.4e-11 73.2 183 34.4
FvH4_1g05550 Fragaria vesca HOM05D005048 ORTHO05D006420 2.4e-11 72.4 133 42.9
FAN23G2083 Fragaria x ananassa HOM05D005048 ORTHO05D006420 3.2e-11 72.0 139 41.7
FAN28G0981 Fragaria x ananassa HOM05D005048 ORTHO05D006420 3.2e-11 72.0 147 40.8
Prupe.7G225700 Prunus persica HOM05D005048 ORTHO05D006420 3.2e-11 72.0 125 43.2
MD15G1191500 Malus domestica HOM05D005048 ORTHO05D006420 5.4e-11 71.2 141 40.4
Peaxi162Scf00231g00512 Petunia axillaris HOM05D005048 ORTHO05D006420 5.4e-11 71.2 73 54.8
Cfa003227 Carpinus fangiana HOM05D005048 ORTHO05D006420 6.0e-10 67.8 131 38.2
CiPaw.04G161700 Carya illinoinensis HOM05D005048 ORTHO05D006420 6.0e-10 67.8 135 39.3
Eucgr.C03804 Eucalyptus grandis HOM05D005048 ORTHO05D006420 7.8e-10 67.4 122 41.8
TPR.G23489 Trifolium pratense HOM05D005048 ORTHO05D006420 7.8e-10 67.4 131 37.4
Cc01_g04910 Coffea canephora HOM05D005048 ORTHO05D006420 1.0e-09 67.0 127 39.4
HanXRQChr03g0061391 Helianthus annuus HOM05D005048 ORTHO05D006420 1.0e-09 67.0 126 39.7
TWI60G0019 Tripterygium wilfordii HOM05D005048 ORTHO05D006420 1.0e-09 67.0 147 37.4
Potri.017G118801 Populus trichocarpa HOM05D005048 ORTHO05D006420 1.3e-09 66.6 117 41.0
Aqoxy5G01302 Aquilegia oxysepala HOM05D005048 ORTHO05D006420 1.7e-09 66.2 110 42.7
Lsat_1_v5_gn_7_41421 Lactuca sativa HOM05D005048 ORTHO05D006420 1.7e-09 66.2 112 41.1
FvH4_1g05600 Fragaria vesca HOM05D005048 ORTHO05D006420 2.3e-09 65.9 43 79.1
Gorai.001G007100 Gossypium raimondii HOM05D005048 ORTHO05D006420 2.3e-09 65.9 135 38.5
PGR102G2767 Punica granatum HOM05D005048 ORTHO05D006420 2.3e-09 65.9 119 40.3
HPP92_003926 Vanilla planifolia HOM05D005048 ORTHO05D006420 2.3e-09 65.9 122 37.7
Ca_17323_v3 Cicer arietinum L. HOM05D005048 ORTHO05D006420 3.0e-09 65.5 119 41.2
Duzib168G1040 Durio zibethinus HOM05D005048 ORTHO05D006420 3.0e-09 65.5 131 38.2
Lj4g0020985 Lotus japonicus HOM05D005048 ORTHO05D006420 3.0e-09 65.5 122 41.0
Nn2g11663 Nelumbo nucifera HOM05D005048 ORTHO05D006420 3.0e-09 65.5 110 41.8
Thecc.09G106000 Theobroma cacao HOM05D005048 ORTHO05D006420 3.0e-09 65.5 135 38.5
Ciclev10008139m.g Citrus clementina HOM05D005048 ORTHO05D006420 3.9e-09 65.1 112 42.0
QL10p015858 Quercus lobata HOM05D005048 ORTHO05D006420 3.9e-09 65.1 112 42.0
GSVIVG01015352001 Vitis vinifera HOM05D005048 ORTHO05D006420 3.9e-09 65.1 112 41.1
Haze_25781 Corylus avellana HOM05D005048 ORTHO05D006420 5.1e-09 64.7 144 36.8
Gohir.D07G007400 Gossypium hirsutum HOM05D005048 ORTHO05D006420 5.1e-09 64.7 135 37.8
Sabra17G0098100 Salix brachista HOM05D005048 ORTHO05D006420 5.1e-09 64.7 117 40.2
SalBow2G2764 Salvia bowleyana HOM05D005048 ORTHO05D006420 6.6e-09 64.3 127 38.6
vmacro06232 Vaccinium macrocarpon HOM05D005048 ORTHO05D006420 8.7e-09 63.9 117 39.3
TWI81G0001 Tripterygium wilfordii HOM05D005048 ORTHO05D006420 1.1e-08 63.5 124 41.1
Lalb_Chr05g0223041 Lupinus albus HOM05D005048 ORTHO05D006420 1.5e-08 63.2 112 41.1
Phvul.002G311600 Phaseolus vulgaris HOM05D005048 ORTHO05D006420 1.5e-08 63.2 112 40.2
Hund09223 Selenicereus undatus HOM05D005048 ORTHO05D006420 1.5e-08 63.2 146 37.0
Aqoxy1G00313 Aquilegia oxysepala HOM05D005048 ORTHO05D006420 1.9e-08 62.8 110 40.9
EL10Ac8g18435 Beta vulgaris HOM05D005048 ORTHO05D006420 1.9e-08 62.8 129 37.2
ECA240G4205 Erigeron canadensis HOM05D005048 ORTHO05D006420 1.9e-08 62.8 110 40.0
Hma1.2p1_1151F.1_g261870 Hydrangea macrophylla HOM05D005048 ORTHO05D006420 2.5e-08 62.4 112 39.3
Oeu026966.2 Olea europaea HOM05D005048 ORTHO05D006420 2.5e-08 62.4 121 36.4
arahy.Tifrunner.gnm1.ann1.T6QICJ Arachis hypogaea HOM05D005048 ORTHO05D006420 3.3e-08 62.0 112 40.2
arahy.Tifrunner.gnm1.ann1.TTP0Q7 Arachis hypogaea HOM05D005048 ORTHO05D006420 3.3e-08 62.0 127 38.6
CAN.G1379.35 Capsicum annuum HOM05D005048 ORTHO05D006420 4.3e-08 61.6 127 37.0
Dinv41630 Davidia involucrata HOM05D005048 ORTHO05D006420 4.3e-08 61.6 109 39.4
Glyma.05G229400 Glycine max HOM05D005048 ORTHO05D006420 4.3e-08 61.6 112 40.2
Sc08g0007680 Simmondsia chinensis HOM05D005048 ORTHO05D006420 4.3e-08 61.6 107 41.1
Dinv36669 Davidia involucrata HOM05D005048 ORTHO05D006420 5.6e-08 61.2 113 38.9
Migut.D01920 Erythranthe guttata HOM05D005048 ORTHO05D006420 5.6e-08 61.2 112 36.6
Gohir.A07G004800 Gossypium hirsutum HOM05D005048 ORTHO05D006420 5.6e-08 61.2 135 37.0
Glyma.14G218300 Glycine max HOM05D005048 ORTHO05D006420 7.3e-08 60.8 112 40.2
Medtr8g103060 Medicago truncatula HOM05D005048 ORTHO05D006420 7.3e-08 60.8 112 40.2
AagrBONN_evm.TU.Sc2ySwM_344.4229 Anthoceros agrestis HOM05D005048 ORTHO05D006420 9.6e-08 60.5 115 36.5
PSO210G2605 Papaver somniferum HOM05D005048 ORTHO05D006420 9.6e-08 60.5 129 37.2
Ah.14g082380 Amaranthus hybridus HOM05D005048 ORTHO05D006420 1.3e-07 60.1 127 37.8
Pp3c9_14820 Physcomitrium patens HOM05D005048 ORTHO05D006420 1.3e-07 60.1 107 40.2
Rhsim03G0239600 Rhododendron simsii HOM05D005048 ORTHO05D006420 1.3e-07 60.1 121 37.2
Nitab4.5_0004090g0040 Nicotiana tabacum HOM05D005048 ORTHO05D006420 1.6e-07 59.7 148 33.8
Solyc01g102490.3 Solanum lycopersicum HOM05D005048 ORTHO05D006420 1.6e-07 59.7 124 36.3
Sopen01g044930 Solanum pennellii HOM05D005048 ORTHO05D006420 1.6e-07 59.7 124 36.3
PGSC0003DMG400018273 Solanum tuberosum HOM05D005048 ORTHO05D006420 1.6e-07 59.7 124 36.3
TAR383G0565 Trochodendron aralioides HOM05D005048 ORTHO05D006420 1.6e-07 59.7 110 39.1
Manes.14G158111 Manihot esculenta HOM05D005048 ORTHO05D006420 2.1e-07 59.3 112 39.3
Actinidia32670 Actinidia chinensis HOM05D005048 ORTHO05D006420 2.8e-07 58.9 112 38.4
SGA_v2.0_scaffold58G20419 Striga asiatica HOM05D005048 ORTHO05D006420 3.6e-07 58.5 112 36.6
Os02g0277600 Oryza sativa ssp. japonica HOM05D005048 ORTHO05D006420 4.8e-07 58.2 115 37.4
FAN26G2936 Fragaria x ananassa HOM05D005048 ORTHO05D006420 6.2e-07 57.8 60 58.3
SHI02718 Sapria himalayana HOM05D005048 ORTHO05D006420 6.2e-07 57.8 112 37.5
Sed0003567 Sechium edule HOM05D005048 ORTHO05D006420 1.1e-06 57.0 131 32.8
BraSC35t45995Z Brassica rapa HOM05D005048 ORTHO05D006420 1.4e-06 56.6 127 35.4
Cpa.g.sc23.64 Carica papaya HOM05D005048 ORTHO05D006420 1.8e-06 56.2 112 37.5
Nitab4.5_0000399g0090 Nicotiana tabacum HOM05D005048 ORTHO05D006420 1.8e-06 56.2 127 34.6
ATR0315G096 Amborella trichopoda HOM05D005048 ORTHO05D006420 2.4e-06 55.8 112 36.6
MELO3C006282.2 Cucumis melo HOM05D005048 ORTHO05D006420 2.4e-06 55.8 113 35.4
unitig_0.g799 Utricularia gibba HOM05D005048 ORTHO05D006420 2.4e-06 55.8 113 35.4
A10p08040 Brassica napus HOM05D005048 ORTHO05D006420 4.0e-06 55.1 127 34.6
DCAR_009632 Daucus carota HOM05D005048 ORTHO05D006420 4.0e-06 55.1 112 37.5
SEGI_35536 Sequoiadendron giganteum HOM05D005048 ORTHO05D006420 4.0e-06 55.1 109 36.7
CARHR240270 Cardamine hirsuta HOM05D005048 ORTHO05D006420 5.3e-06 54.7 112 36.6
Carub.0007s0821 Capsella rubella HOM05D005048 ORTHO05D006420 6.9e-06 54.3 112 35.7
Thhalv10013379m.g Eutrema salsugineum HOM05D005048 ORTHO05D006420 6.9e-06 54.3 109 36.7
THA.LOC104799066 Tarenaya hassleriana HOM05D005048 ORTHO05D006420 6.9e-06 54.3 109 37.6
AL7G19480 Arabidopsis lyrata HOM05D005048 ORTHO05D006420 9.0e-06 53.9 112 36.6


User provided reference genes

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