Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g05551 Fragaria vesca HOM05D005048 ORTHO05D006420 1.3e-45 186.0 94 100.0
FAN19G2567 Fragaria x ananassa HOM05D005048 ORTHO05D006420 9.3e-44 179.9 92 100.0
FAN26G2936 Fragaria x ananassa HOM05D005048 ORTHO05D006420 6.7e-26 120.6 74 87.8
FvH4_1g05550 Fragaria vesca HOM05D005048 ORTHO05D006420 8.7e-26 120.2 75 86.7
FAN23G2083 Fragaria x ananassa HOM05D005048 ORTHO05D006420 1.9e-25 119.0 74 86.5
FAN28G0981 Fragaria x ananassa HOM05D005048 ORTHO05D006420 4.3e-25 117.9 75 85.3
RcHm_v2.0_Chr2g0091251 Rosa chinensis HOM05D005048 ORTHO05D006420 1.4e-23 112.8 74 79.7
Prupe.7G225700 Prunus persica HOM05D005048 ORTHO05D006420 1.7e-21 105.9 72 72.2
MD02G1057100 Malus domestica HOM05D005048 ORTHO05D006420 2.9e-21 105.1 72 72.2
Ciclev10008139m.g Citrus clementina HOM05D005048 ORTHO05D006420 3.3e-17 91.7 71 66.2
Lalb_Chr05g0223041 Lupinus albus HOM05D005048 ORTHO05D006420 7.4e-17 90.5 71 67.6
Cpa.g.sc23.64 Carica papaya HOM05D005048 ORTHO05D006420 1.6e-16 89.4 76 59.2
Cfa003227 Carpinus fangiana HOM05D005048 ORTHO05D006420 2.2e-16 89.0 71 64.8
Potri.017G118801 Populus trichocarpa HOM05D005048 ORTHO05D006420 2.8e-16 88.6 75 62.7
AUR62010945 Chenopodium quinoa HOM05D005048 ORTHO05D006420 4.8e-16 87.8 126 43.7
Hma1.2p1_1151F.1_g261870 Hydrangea macrophylla HOM05D005048 ORTHO05D006420 4.8e-16 87.8 71 63.4
Eucgr.C03804 Eucalyptus grandis HOM05D005048 ORTHO05D006420 6.3e-16 87.4 69 66.7
Nn2g11663 Nelumbo nucifera HOM05D005048 ORTHO05D006420 1.1e-15 86.7 69 65.2
Thecc.09G106000 Theobroma cacao HOM05D005048 ORTHO05D006420 1.1e-15 86.7 75 58.7
Haze_25781 Corylus avellana HOM05D005048 ORTHO05D006420 1.4e-15 86.3 71 62.0
GSVIVG01015352001 Vitis vinifera HOM05D005048 ORTHO05D006420 1.8e-15 85.9 71 64.8
CiPaw.04G161700 Carya illinoinensis HOM05D005048 ORTHO05D006420 2.4e-15 85.5 75 61.3
Ca_17323_v3 Cicer arietinum L. HOM05D005048 ORTHO05D006420 2.4e-15 85.5 75 61.3
PGR102G2767 Punica granatum HOM05D005048 ORTHO05D006420 3.1e-15 85.1 72 61.1
COL.COLO4_37106 Corchorus olitorius HOM05D005048 ORTHO05D006420 4.1e-15 84.7 75 58.7
Duzib168G1040 Durio zibethinus HOM05D005048 ORTHO05D006420 4.1e-15 84.7 75 56.0
Lj4g0020985 Lotus japonicus HOM05D005048 ORTHO05D006420 5.3e-15 84.3 75 61.3
PGSC0003DMG400018273 Solanum tuberosum HOM05D005048 ORTHO05D006420 6.9e-15 84.0 75 57.3
Gohir.A07G004800 Gossypium hirsutum HOM05D005048 ORTHO05D006420 9.0e-15 83.6 71 57.7
Gohir.D07G007400 Gossypium hirsutum HOM05D005048 ORTHO05D006420 9.0e-15 83.6 71 57.7
Gorai.001G007100 Gossypium raimondii HOM05D005048 ORTHO05D006420 9.0e-15 83.6 71 57.7
Sabra17G0098100 Salix brachista HOM05D005048 ORTHO05D006420 9.0e-15 83.6 71 62.0
Atru.chr7.1383 Acer truncatum HOM05D005048 ORTHO05D006420 1.2e-14 83.2 76 56.6
CSS0046369 Camellia sinensis var. sinensis HOM05D005048 ORTHO05D006420 1.2e-14 83.2 71 56.3
Peaxi162Scf00231g00512 Petunia axillaris HOM05D005048 ORTHO05D006420 1.2e-14 83.2 75 58.7
Rhsim03G0239600 Rhododendron simsii HOM05D005048 ORTHO05D006420 1.2e-14 83.2 70 58.6
Sopen01g044930 Solanum pennellii HOM05D005048 ORTHO05D006420 1.2e-14 83.2 75 57.3
Migut.D01920 Erythranthe guttata HOM05D005048 ORTHO05D006420 3.4e-14 81.6 69 56.5
VMungo0251G3001 Vigna mungo HOM05D005048 ORTHO05D006420 3.4e-14 81.6 74 63.5
HanXRQChr03g0061391 Helianthus annuus HOM05D005048 ORTHO05D006420 1.0e-13 80.1 83 50.6
unitig_0.g799 Utricularia gibba HOM05D005048 ORTHO05D006420 1.0e-13 80.1 68 57.4
arahy.Tifrunner.gnm1.ann1.T6QICJ Arachis hypogaea HOM05D005048 ORTHO05D006420 1.3e-13 79.7 75 56.0
arahy.Tifrunner.gnm1.ann1.TTP0Q7 Arachis hypogaea HOM05D005048 ORTHO05D006420 1.3e-13 79.7 75 56.0
TPR.G23489 Trifolium pratense HOM05D005048 ORTHO05D006420 1.7e-13 79.3 75 57.3
CAN.G1379.35 Capsicum annuum HOM05D005048 ORTHO05D006420 2.2e-13 79.0 75 57.3
TWI81G0001 Tripterygium wilfordii HOM05D005048 ORTHO05D006420 2.2e-13 79.0 71 60.6
Medtr8g103060 Medicago truncatula HOM05D005048 ORTHO05D006420 2.9e-13 78.6 75 60.0
TAR383G0565 Trochodendron aralioides HOM05D005048 ORTHO05D006420 5.0e-13 77.8 69 59.4
ClCG05G003020 Citrullus lanatus HOM05D005048 ORTHO05D006420 6.5e-13 77.4 72 58.3
SHI02717 Sapria himalayana HOM05D005048 ORTHO05D012697 6.5e-13 77.4 77 49.4
HPP92_003926 Vanilla planifolia HOM05D005048 ORTHO05D006420 6.5e-13 77.4 75 53.3
Oeu026966.2 Olea europaea HOM05D005048 ORTHO05D006420 8.5e-13 77.0 69 55.1
vmacro06232 Vaccinium macrocarpon HOM05D005048 ORTHO05D006420 8.5e-13 77.0 70 52.9
EL10Ac8g18435 Beta vulgaris HOM05D005048 ORTHO05D006420 1.1e-12 76.6 71 59.2
Actinidia32670 Actinidia chinensis HOM05D005048 ORTHO05D006420 1.4e-12 76.3 70 55.7
MBI01_g38807_MAGBIO Magnolia biondii HOM05D005048 ORTHO05D006420 1.4e-12 76.3 71 54.9
AUR62021458 Chenopodium quinoa HOM05D005048 ORTHO05D006420 1.9e-12 75.9 71 56.3
MELO3C006282.2 Cucumis melo HOM05D005048 ORTHO05D006420 3.2e-12 75.1 72 56.9
Glyma.05G229400 Glycine max HOM05D005048 ORTHO05D006420 3.2e-12 75.1 77 57.1
Hund09223 Selenicereus undatus HOM05D005048 ORTHO05D006420 3.2e-12 75.1 71 56.3
PSO210G2605 Papaver somniferum HOM05D005048 ORTHO05D006420 4.2e-12 74.7 74 51.4
SalBow2G2764 Salvia bowleyana HOM05D005048 ORTHO05D006420 5.5e-12 74.3 73 50.7
BcaB08g35458 Brassica carinata HOM05D005048 ORTHO05D006420 7.2e-12 73.9 73 49.3
BcaC04g20784 Brassica carinata HOM05D005048 ORTHO05D006420 1.2e-11 73.2 72 47.2
C09p39250 Brassica napus HOM05D005048 ORTHO05D006420 1.2e-11 73.2 72 47.2
BolC9t56804H Brassica oleracea HOM05D005048 ORTHO05D006420 1.2e-11 73.2 72 47.2
TWI60G0019 Tripterygium wilfordii HOM05D005048 ORTHO05D006420 1.2e-11 73.2 71 56.3
Ah.14g082380 Amaranthus hybridus HOM05D005048 ORTHO05D006420 1.6e-11 72.8 71 53.5
Aqoxy5G01302 Aquilegia oxysepala HOM05D005048 ORTHO05D006420 1.6e-11 72.8 73 52.1
Glyma.14G218300 Glycine max HOM05D005048 ORTHO05D006420 1.6e-11 72.8 77 55.8
Os02g0277600 Oryza sativa ssp. japonica HOM05D005048 ORTHO05D006420 2.1e-11 72.4 77 50.6
THA.LOC104799066 Tarenaya hassleriana HOM05D005048 ORTHO05D006420 2.7e-11 72.0 70 52.9
ECA240G4205 Erigeron canadensis HOM05D005048 ORTHO05D006420 3.6e-11 71.6 73 52.1
AL7G19480 Arabidopsis lyrata HOM05D005048 ORTHO05D006420 6.1e-11 70.9 72 48.6
CsaV3_3G010630 Cucumis sativus L. HOM05D005048 ORTHO05D006420 6.1e-11 70.9 71 54.9
Carub.0007s0821 Capsella rubella HOM05D005048 ORTHO05D006420 7.9e-11 70.5 72 51.4
PSO210G5559 Papaver somniferum HOM05D005048 ORTHO05D006420 1.4e-10 69.7 74 48.6
QL10p015858 Quercus lobata HOM05D005048 ORTHO05D006420 1.8e-10 69.3 69 56.5
A10p08040 Brassica napus HOM05D005048 ORTHO05D006420 3.0e-10 68.6 72 44.4
Aqoxy1G00313 Aquilegia oxysepala HOM05D005048 ORTHO05D006420 5.1e-10 67.8 73 49.3
Cc01_g04910 Coffea canephora HOM05D005048 ORTHO05D006420 5.1e-10 67.8 72 50.0
BraSC35t45995Z Brassica rapa HOM05D005048 ORTHO05D006420 8.8e-10 67.0 72 43.1
SGA_v2.0_scaffold58G20419 Striga asiatica HOM05D005048 ORTHO05D006420 1.5e-09 66.2 68 50.0
SEGI_37811 Sequoiadendron giganteum HOM05D005048 ORTHO05D012697 2.0e-09 65.9 70 47.1
MD15G1191600 Malus domestica HOM05D005048 ORTHO05D006420 3.3e-09 65.1 44 72.7
ATR0315G096 Amborella trichopoda HOM05D005048 ORTHO05D006420 5.7e-09 64.3 73 45.2
CBR_g50003 Chara braunii HOM05D005048 ORTHO05D006420 5.7e-09 64.3 73 47.9
Oeu035977.1 Olea europaea HOM05D005048 ORTHO05D006420 5.7e-09 64.3 68 48.5
Thhalv10013379m.g Eutrema salsugineum HOM05D005048 ORTHO05D006420 9.7e-09 63.5 88 39.8
CDE05G1289 Ceratophyllum demersum HOM05D005048 ORTHO05D006420 1.3e-08 63.2 71 46.5
Sp7g30130 Schrenkiella parvula HOM05D005048 ORTHO05D006420 1.3e-08 63.2 74 48.6
CARHR240280 Cardamine hirsuta HOM05D005048 ORTHO05D006420 2.8e-08 62.0 74 44.6
Aa31LG2G18290 Aethionema arabicum HOM05D005048 ORTHO05D006420 3.7e-08 61.6 71 45.1
Lsat_1_v5_gn_7_41421 Lactuca sativa HOM05D005048 ORTHO05D006420 4.8e-08 61.2 83 39.8
Mapoly0125s0046 Marchantia polymorpha HOM05D005048 ORTHO05D006420 7.7e-06 53.9 85 36.5


User provided reference genes

Program Settings