Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g04984 Fragaria vesca HOM05D003720 ORTHO05D005312 3.4e-83 311.6 158 100.0
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 8.5e-58 227.3 136 86.0
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 8.5e-58 227.3 136 86.0
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 8.5e-58 227.3 136 86.0
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 8.5e-58 227.3 136 86.0
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 8.5e-58 227.3 136 86.0
FAN23G2146 Fragaria x ananassa HOM05D003720 ORTHO05D005312 5.5e-57 224.6 136 85.3
COL.COLO4_34940 Corchorus olitorius HOM05D003720 ORTHO05D005312 6.1e-56 221.1 136 83.1
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 1.0e-55 220.3 136 82.4
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 1.0e-55 220.3 136 83.8
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 1.8e-55 219.5 136 83.1
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 2.3e-55 219.2 136 82.4
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 4.0e-55 218.4 136 81.6
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 8.8e-55 217.2 136 81.6
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 1.1e-54 216.9 136 81.6
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 1.5e-54 216.5 157 72.0
Cpa.g.sc23.154 Carica papaya HOM05D003720 ORTHO05D005312 1.5e-54 216.5 136 80.9
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 2.0e-54 216.1 136 80.9
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 2.0e-54 216.1 136 80.9
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 4.4e-54 214.9 136 79.4
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 5.7e-54 214.5 136 80.9
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 7.5e-54 214.2 136 80.1
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 9.7e-54 213.8 136 80.9
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.7e-53 213.0 136 80.1
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 1.7e-53 213.0 136 80.9
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 2.2e-53 212.6 136 79.4
Hund12707 Selenicereus undatus HOM05D003720 ORTHO05D005312 2.8e-53 212.2 136 80.1
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 3.7e-53 211.8 136 80.1
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 4.8e-53 211.5 136 78.7
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 4.8e-53 211.5 136 79.4
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 4.8e-53 211.5 136 77.9
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 6.3e-53 211.1 136 79.4
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 8.2e-53 210.7 136 79.4
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 8.2e-53 210.7 136 79.4
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 1.1e-52 210.3 136 80.1
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 1.4e-52 209.9 136 78.7
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 1.8e-52 209.5 136 80.1
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 1.8e-52 209.5 136 78.7
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 2.4e-52 209.1 136 79.4
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 2.4e-52 209.1 136 79.4
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 2.4e-52 209.1 136 78.7
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 2.4e-52 209.1 136 79.4
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 2.4e-52 209.1 136 78.7
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 2.4e-52 209.1 136 77.9
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 3.1e-52 208.8 136 78.7
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 3.1e-52 208.8 136 79.4
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 4.1e-52 208.4 136 80.1
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 4.1e-52 208.4 136 77.9
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 4.1e-52 208.4 136 78.7
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 4.1e-52 208.4 136 79.4
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 4.1e-52 208.4 136 77.2
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 7.0e-52 207.6 136 77.9
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 7.0e-52 207.6 136 78.7
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 9.1e-52 207.2 136 77.2
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 9.1e-52 207.2 136 77.2
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 9.1e-52 207.2 136 77.2
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 9.1e-52 207.2 136 78.7
Peaxi162Scf00256g00817 Petunia axillaris HOM05D003720 ORTHO05D005312 2.0e-51 206.1 136 76.5
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 2.0e-51 206.1 136 78.7
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 3.5e-51 205.3 136 75.7
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 3.5e-51 205.3 136 76.5
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 3.5e-51 205.3 136 76.5
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 4.5e-51 204.9 143 73.4
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 4.5e-51 204.9 136 75.7
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 4.5e-51 204.9 136 77.2
Gohir.D05G022400 Gossypium hirsutum HOM05D003720 ORTHO05D005312 4.5e-51 204.9 136 77.2
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 4.5e-51 204.9 136 77.2
Lj7C641G5 Lonicera japonica HOM05D003720 ORTHO05D005312 5.9e-51 204.5 136 77.9
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 1.0e-50 203.8 136 75.7
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 1.0e-50 203.8 136 75.7
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 1.7e-50 203.0 136 75.7
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 1.7e-50 203.0 136 77.9
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 2.2e-50 202.6 143 74.1
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 2.9e-50 202.2 136 75.0
Nitab4.5_0000100g0300 Nicotiana tabacum HOM05D003720 ORTHO05D005312 2.9e-50 202.2 136 73.5
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 2.9e-50 202.2 136 77.2
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 3.8e-50 201.8 136 74.3
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 5.0e-50 201.4 136 77.2
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 5.0e-50 201.4 136 75.0
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 5.0e-50 201.4 136 74.3
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 6.5e-50 201.1 136 75.0
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 8.5e-50 200.7 136 75.7
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 8.5e-50 200.7 136 76.5
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 1.1e-49 200.3 136 75.7
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 1.5e-49 199.9 136 74.3
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 2.5e-49 199.1 136 74.3
Nitab4.5_0002116g0040 Nicotiana tabacum HOM05D003720 ORTHO05D005312 3.2e-49 198.7 136 73.5
CARHR119040 Cardamine hirsuta HOM05D003720 ORTHO05D005312 4.2e-49 198.4 136 73.5
SEGI_35777 Sequoiadendron giganteum HOM05D003720 ORTHO05D005312 5.5e-49 198.0 136 74.3
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 7.2e-49 197.6 136 75.0
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 9.4e-49 197.2 136 73.5
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 9.4e-49 197.2 136 72.8
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 9.4e-49 197.2 136 74.3
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 1.2e-48 196.8 136 72.8
BcaC02g10846 Brassica carinata HOM05D003720 ORTHO05D005312 1.6e-48 196.4 136 72.1
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 1.6e-48 196.4 136 72.1
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 1.6e-48 196.4 136 72.1
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 1.6e-48 196.4 136 72.1
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 6.1e-48 194.5 136 71.3
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 1.4e-47 193.4 134 76.1
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 6.8e-47 191.0 136 73.5
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 6.8e-47 191.0 136 70.6
SHI03186 Sapria himalayana HOM05D003720 ORTHO05D005312 8.8e-47 190.7 136 72.1
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 7.0e-44 181.0 136 66.9
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 3.5e-43 178.7 133 66.2
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 3.5e-43 178.7 136 67.6
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 7.7e-43 177.6 133 66.2
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 1.7e-42 176.4 136 66.9
CDE07G1715 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 2.0e-38 162.9 107 78.5
GSVIVG01015441001 Vitis vinifera HOM05D003720 ORTHO05D005312 9.8e-38 160.6 108 75.0
CBR_g4479 Chara braunii HOM05D003720 ORTHO05D005312 6.6e-34 147.9 129 58.9
arahy.Tifrunner.gnm1.ann1.PTA25Z Arachis hypogaea HOM05D003720 ORTHO05D005312 2.3e-31 139.4 136 58.1
arahy.Tifrunner.gnm1.ann1.7C8SEE Arachis hypogaea HOM05D003720 ORTHO05D005312 2.1e-11 73.2 63 58.7
PRCOL_00006435 Prasinoderma coloniale HOM05D003720 ORTHO05D005312 1.7e-10 70.1 111 40.5


User provided reference genes

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