Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g04983 Fragaria vesca HOM05D003720 ORTHO05D197786 2.2e-67 258.8 133 100.0
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 1.6e-17 93.2 79 72.2
FAN23G2146 Fragaria x ananassa HOM05D003720 ORTHO05D005312 4.1e-13 78.6 97 55.7
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 9.5e-10 67.4 89 53.9
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 9.5e-10 67.4 89 53.9
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 9.5e-10 67.4 89 53.9
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 9.5e-10 67.4 89 53.9
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 3.6e-09 65.5 64 59.4
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 1.0e-08 63.9 89 50.6
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 1.4e-08 63.5 60 60.0
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 1.4e-08 63.5 81 51.9
Lj7C641G5 Lonicera japonica HOM05D003720 ORTHO05D005312 3.1e-08 62.4 60 61.7
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 3.1e-08 62.4 60 60.0
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 3.1e-08 62.4 60 60.0
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 4.0e-08 62.0 59 59.3
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 5.2e-08 61.6 60 56.7
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 5.2e-08 61.6 60 60.0
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 6.8e-08 61.2 60 61.7
Actinidia26424 Actinidia chinensis HOM05D003720 ORTHO05D005312 8.9e-08 60.8 60 60.0
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 8.9e-08 60.8 60 60.0
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 1.2e-07 60.5 60 60.0
Hma1.2p1_0245F.1_g101400 Hydrangea macrophylla HOM05D003720 ORTHO05D005312 1.2e-07 60.5 60 58.3
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 1.2e-07 60.5 60 58.3
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 1.5e-07 60.1 60 58.3
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.5e-07 60.1 60 56.7
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 2.0e-07 59.7 60 56.7
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 2.0e-07 59.7 60 56.7
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 2.0e-07 59.7 60 58.3
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 2.0e-07 59.7 60 58.3
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 2.0e-07 59.7 60 56.7
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 2.6e-07 59.3 60 56.7
COL.COLO4_34940 Corchorus olitorius HOM05D003720 ORTHO05D005312 2.6e-07 59.3 60 58.3
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 2.6e-07 59.3 60 56.7
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 2.6e-07 59.3 60 58.3
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 3.4e-07 58.9 60 56.7
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 3.4e-07 58.9 59 57.6
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 3.4e-07 58.9 59 57.6
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 3.4e-07 58.9 60 56.7
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 3.4e-07 58.9 60 56.7
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 3.4e-07 58.9 60 58.3
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 3.4e-07 58.9 60 56.7
Cpa.g.sc23.154 Carica papaya HOM05D003720 ORTHO05D005312 4.4e-07 58.5 60 56.7
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 4.4e-07 58.5 59 55.9
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 5.8e-07 58.2 60 58.3
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 5.8e-07 58.2 60 56.7
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 7.5e-07 57.8 59 55.9
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 7.5e-07 57.8 61 54.1
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 9.8e-07 57.4 60 55.0
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 1.3e-06 57.0 60 53.3
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 1.3e-06 57.0 60 55.0
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 1.3e-06 57.0 60 53.3
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 1.7e-06 56.6 60 55.0
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 1.7e-06 56.6 60 55.0
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 1.7e-06 56.6 60 55.0
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 1.7e-06 56.6 60 55.0
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 1.7e-06 56.6 60 55.0
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 2.2e-06 56.2 60 55.0
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 2.9e-06 55.8 59 57.6
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 2.9e-06 55.8 60 55.0
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 2.9e-06 55.8 60 55.0
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 3.7e-06 55.5 60 55.0
GSVIVG01015442001 Vitis vinifera HOM05D003720 ORTHO05D005312 3.7e-06 55.5 60 55.0
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 4.9e-06 55.1 60 53.3
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 4.9e-06 55.1 60 55.0
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 4.9e-06 55.1 60 53.3
Os10g0575200 Oryza sativa ssp. japonica HOM05D003720 ORTHO05D005312 4.9e-06 55.1 60 51.7
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 4.9e-06 55.1 60 53.3
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 4.9e-06 55.1 60 53.3
HPP92_014850 Vanilla planifolia HOM05D003720 ORTHO05D005312 4.9e-06 55.1 61 49.2
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 6.4e-06 54.7 60 53.3
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 6.4e-06 54.7 60 55.0
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 6.4e-06 54.7 62 51.6
Nitab4.5_0002116g0040 Nicotiana tabacum HOM05D003720 ORTHO05D005312 8.3e-06 54.3 60 53.3
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 8.3e-06 54.3 59 55.9


User provided reference genes

Program Settings