Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g04931 Fragaria vesca HOM05D007828 ORTHO05D009889 2.3e-122 442.6 286 100.0
FAN19G0878 Fragaria x ananassa HOM05D007828 ORTHO05D009889 1.0e-117 427.2 286 97.9
FAN26G0421 Fragaria x ananassa HOM05D007828 ORTHO05D009889 6.8e-114 414.5 286 91.6
RcHm_v2.0_Chr2g0090531 Rosa chinensis HOM05D007828 ORTHO05D009889 7.8e-94 347.8 294 81.0
Prupe.7G230300 Prunus persica HOM05D007828 ORTHO05D009889 2.5e-63 246.5 315 56.5
MD02G1047900 Malus domestica HOM05D007828 ORTHO05D009889 1.6e-51 207.2 317 53.9
Haze_25710 Corylus avellana HOM05D007828 ORTHO05D009889 4.8e-51 205.7 290 58.3
Ciclev10010509m.g Citrus clementina HOM05D007828 ORTHO05D009889 1.1e-50 204.5 304 49.3
Cfa003261 Carpinus fangiana HOM05D007828 ORTHO05D009889 5.3e-50 202.2 291 54.0
CiPaw.04G164600 Carya illinoinensis HOM05D007828 ORTHO05D009889 1.0e-48 198.0 296 49.7
Manes.03G019900 Manihot esculenta HOM05D007828 ORTHO05D009889 4.2e-47 192.6 293 53.6
Thecc.09G111200 Theobroma cacao HOM05D007828 ORTHO05D009889 2.2e-43 180.3 316 47.2
CsaV3_1G030510 Cucumis sativus L. HOM05D007828 ORTHO05D009889 4.8e-43 179.1 314 45.5
Cpa.g.sc810.5 Carica papaya HOM05D007828 ORTHO05D009889 1.1e-42 177.9 306 46.1
Gohir.A06G062100 Gossypium hirsutum HOM05D007828 ORTHO05D009889 5.3e-42 175.6 298 47.3
Potri.018G079400 Populus trichocarpa HOM05D007828 ORTHO05D009889 2.6e-41 173.3 310 50.6
TWI63G1614 Tripterygium wilfordii HOM05D007828 ORTHO05D009889 1.3e-40 171.0 300 47.0
Manes.16G116600 Manihot esculenta HOM05D007828 ORTHO05D009889 2.2e-40 170.2 300 48.3
Gorai.010G070300 Gossypium raimondii HOM05D007828 ORTHO05D009889 5.0e-40 169.1 298 46.6
TAR624G0153 Trochodendron aralioides HOM05D007828 ORTHO05D009889 1.1e-39 167.9 274 45.6
PGR142G3024 Punica granatum HOM05D007828 ORTHO05D009889 2.5e-39 166.8 288 44.1
Gohir.D06G060400 Gossypium hirsutum HOM05D007828 ORTHO05D009889 4.2e-39 166.0 298 44.3
Duzib187G0623 Durio zibethinus HOM05D007828 ORTHO05D009889 7.2e-39 165.2 302 49.3
TAR636G3628 Trochodendron aralioides HOM05D007828 ORTHO05D009889 2.1e-38 163.7 291 52.9
Phvul.002G313500 Phaseolus vulgaris HOM05D007828 ORTHO05D009889 3.6e-38 162.9 300 43.3
Atru.chr7.1344 Acer truncatum HOM05D007828 ORTHO05D009889 4.7e-38 162.5 306 49.7
Lj4g0015011 Lotus japonicus HOM05D007828 ORTHO05D009889 2.3e-37 160.2 303 44.2
Actinidia20352 Actinidia chinensis HOM05D007828 ORTHO05D009889 8.8e-37 158.3 287 43.9
Sed0012449 Sechium edule HOM05D007828 ORTHO05D009889 8.8e-37 158.3 301 44.9
MELO3C025334.2 Cucumis melo HOM05D007828 ORTHO05D009889 1.5e-36 157.5 287 45.3
Sed0011451 Sechium edule HOM05D007828 ORTHO05D009889 1.5e-36 157.5 317 42.9
Phvul.004G163000 Phaseolus vulgaris HOM05D007828 ORTHO05D009889 2.0e-36 157.1 299 52.5
QL02p085484 Quercus lobata HOM05D007828 ORTHO05D009889 4.4e-36 156.0 291 52.6
COL.COLO4_34914 Corchorus olitorius HOM05D007828 ORTHO05D009889 9.7e-36 154.8 310 51.0
Dinv41596 Davidia involucrata HOM05D007828 ORTHO05D009889 9.7e-36 154.8 281 54.4
Glyma.08G038800 Glycine max HOM05D007828 ORTHO05D009889 1.3e-35 154.5 289 45.7
Glyma.09G190200 Glycine max HOM05D007828 ORTHO05D009889 3.7e-35 152.9 306 50.0
Cc06_g09610 Coffea canephora HOM05D007828 ORTHO05D009889 1.8e-34 150.6 297 40.4
Glyma.05G231300 Glycine max HOM05D007828 ORTHO05D009889 2.4e-34 150.2 296 44.3
VMungo0251G2715 Vigna mungo HOM05D007828 ORTHO05D009889 4.1e-34 149.4 304 46.7
Lalb_Chr14g0371491 Lupinus albus HOM05D007828 ORTHO05D009889 3.5e-33 146.4 313 51.8
Duzib168G1738 Durio zibethinus HOM05D007828 ORTHO05D009889 1.1e-31 141.4 220 45.0
Medtr6g086505 Medicago truncatula HOM05D007828 ORTHO05D009889 1.5e-31 141.0 301 43.9
Actinidia09414 Actinidia chinensis HOM05D007828 ORTHO05D009889 4.7e-30 136.0 264 45.8
VMungo0464G0263 Vigna mungo HOM05D007828 ORTHO05D009889 1.4e-29 134.4 295 51.2
Lj2g0009665 Lotus japonicus HOM05D007828 ORTHO05D009889 5.2e-29 132.5 303 47.5
PSO063G6099 Papaver somniferum HOM05D007828 ORTHO05D009889 9.7e-28 128.3 332 39.5
Psat1g042080 Pisum sativum HOM05D007828 ORTHO05D009889 6.3e-27 125.6 268 48.1
Ah.14g081900 Amaranthus hybridus HOM05D007828 ORTHO05D009889 1.1e-26 124.8 288 40.6
EL10Ac8g18503 Beta vulgaris HOM05D007828 ORTHO05D009889 9.1e-26 121.7 313 39.0
THA.LOC104811107 Tarenaya hassleriana HOM05D007828 ORTHO05D009889 1.5e-23 114.4 286 37.8
Rhsim03G0242900 Rhododendron simsii HOM05D007828 ORTHO05D009889 5.5e-23 112.5 286 40.2
PSO782G3184 Papaver somniferum HOM05D007828 ORTHO05D009889 9.4e-23 111.7 307 38.1
Oeu013432.1 Olea europaea HOM05D007828 ORTHO05D009889 1.2e-22 111.3 283 36.7
Lsat_1_v5_gn_7_40641 Lactuca sativa HOM05D007828 ORTHO05D009889 1.0e-21 108.2 288 41.0
DCAR_028715 Daucus carota HOM05D007828 ORTHO05D009889 1.4e-21 107.8 281 40.9
Lsat_1_v5_gn_5_103381 Lactuca sativa HOM05D007828 ORTHO05D009889 1.5e-20 104.4 284 39.8
AUR62021512 Chenopodium quinoa HOM05D007828 ORTHO05D009889 9.8e-20 101.7 273 37.0
Dinv36622 Davidia involucrata HOM05D007828 ORTHO05D009889 3.7e-19 99.8 263 49.0
AT3G29300 Arabidopsis thaliana HOM05D007828 ORTHO05D009889 7.7e-17 92.0 292 33.6
Sp2g17900 Schrenkiella parvula HOM05D007828 ORTHO05D009889 7.7e-17 92.0 282 37.9
Lj7C649T8 Lonicera japonica HOM05D007828 ORTHO05D009889 1.9e-15 87.4 174 42.0
A06p39980 Brassica napus HOM05D007828 ORTHO05D009889 2.5e-15 87.0 293 34.1
BraA06t26913Z Brassica rapa HOM05D007828 ORTHO05D009889 2.5e-15 87.0 293 34.1
MBI15_g13431_MAGBIO Magnolia biondii HOM05D007828 ORTHO05D009889 3.2e-15 86.7 219 38.4
ECA240G1757 Erigeron canadensis HOM05D007828 ORTHO05D009889 1.6e-14 84.3 206 35.9
Thhalv10004856m.g Eutrema salsugineum HOM05D007828 ORTHO05D009889 1.6e-14 84.3 290 40.3
CARHR154000 Cardamine hirsuta HOM05D007828 ORTHO05D009889 3.6e-14 83.2 288 36.8
Lalb_Chr22g0352821 Lupinus albus HOM05D007828 ORTHO05D009889 8.0e-14 82.0 288 38.2
BcaC06g33685 Brassica carinata HOM05D007828 ORTHO05D009889 4.0e-13 79.7 286 33.2
Ah.09g227940 Amaranthus hybridus HOM05D007828 ORTHO05D009889 5.2e-13 79.3 248 33.1
TPR.G35269 Trifolium pratense HOM05D007828 ORTHO05D009889 6.8e-13 79.0 213 36.2
C07p38190 Brassica napus HOM05D007828 ORTHO05D009889 8.8e-13 78.6 294 33.3
BolC7t44341H Brassica oleracea HOM05D007828 ORTHO05D009889 8.8e-13 78.6 294 33.3
PGSC0003DMG400000314 Solanum tuberosum HOM05D007828 ORTHO05D009889 4.4e-12 76.3 124 47.6
AL5G19330 Arabidopsis lyrata HOM05D007828 ORTHO05D009889 7.5e-12 75.5 292 38.0
Glyma.07G086700 Glycine max HOM05D007828 ORTHO05D009889 9.8e-12 75.1 191 51.3
Gorai.001G005100 Gossypium raimondii HOM05D007828 ORTHO05D009889 2.8e-11 73.6 189 41.8
Carub.0005s0801 Capsella rubella HOM05D007828 ORTHO05D009889 3.7e-11 73.2 166 44.6
Gohir.A07G006450 Gossypium hirsutum HOM05D007828 ORTHO05D009889 1.8e-10 70.9 189 41.3
Sc18g0001180 Simmondsia chinensis HOM05D007828 ORTHO05D009889 5.9e-09 65.9 270 32.6
HanXRQChr03g0061871 Helianthus annuus HOM05D007828 ORTHO05D009889 1.0e-08 65.1 203 35.5
Nn8g39203 Nelumbo nucifera HOM05D007828 ORTHO05D009889 1.9e-07 60.8 149 38.3


User provided reference genes

Program Settings