Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g04841 Fragaria vesca HOM05D007950 ORTHO05D009951 5.7e-30 133.7 70 100.0
FAN19G2230 Fragaria x ananassa HOM05D007950 ORTHO05D009951 5.7e-30 133.7 70 100.0
FAN26G3407 Fragaria x ananassa HOM05D007950 ORTHO05D009951 2.4e-28 128.3 70 95.7
FAN23G0617 Fragaria x ananassa HOM05D007950 ORTHO05D009951 3.1e-28 127.9 70 95.7
RcHm_v2.0_Chr2g0090511 Rosa chinensis HOM05D007950 ORTHO05D009951 2.0e-27 125.2 70 90.0
MD02G1047700 Malus domestica HOM05D007950 ORTHO05D009951 5.0e-26 120.6 70 85.7
MD15G1186200 Malus domestica HOM05D007950 ORTHO05D009951 1.1e-25 119.4 70 84.3
Eucgr.C01044 Eucalyptus grandis HOM05D007950 ORTHO05D009951 7.2e-25 116.7 70 85.7
GSVIVG01015395001 Vitis vinifera HOM05D007950 ORTHO05D009951 7.2e-25 116.7 70 82.9
QL02p085472 Quercus lobata HOM05D007950 ORTHO05D009951 3.6e-24 114.4 69 79.7
Thecc.09G111000 Theobroma cacao HOM05D007950 ORTHO05D009951 3.6e-24 114.4 70 78.6
Manes.16G116501 Manihot esculenta HOM05D007950 ORTHO05D009951 7.9e-24 113.2 70 77.1
Prupe.7G230500 Prunus persica HOM05D007950 ORTHO05D009951 3.9e-23 110.9 61 88.5
CSS0015996 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 5.1e-23 110.5 68 77.9
Ciclev10010772m.g Citrus clementina HOM05D007950 ORTHO05D009951 2.0e-22 108.6 70 75.7
vmacro20696 Vaccinium macrocarpon HOM05D007950 ORTHO05D009951 2.0e-22 108.6 70 74.3
Actinidia20354 Actinidia chinensis HOM05D007950 ORTHO05D009951 3.3e-22 107.8 68 77.9
Gohir.A06G062300 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.3e-22 107.8 68 79.4
Gohir.D06G060600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 4.4e-22 107.5 68 77.9
ClCG06G008510 Citrullus lanatus HOM05D007950 ORTHO05D009951 1.7e-21 105.5 70 74.3
Gorai.010G070600 Gossypium raimondii HOM05D007950 ORTHO05D009951 1.7e-21 105.5 68 76.5
QL05p023317 Quercus lobata HOM05D007950 ORTHO05D009951 3.7e-21 104.4 69 73.9
CiPaw.04G164400 Carya illinoinensis HOM05D007950 ORTHO05D009951 4.8e-21 104.0 61 82.0
CsaV3_1G030490 Cucumis sativus L. HOM05D007950 ORTHO05D009951 4.8e-21 104.0 68 73.5
Thecc.06G089600 Theobroma cacao HOM05D007950 ORTHO05D009951 8.2e-21 103.2 68 77.9
TAR636G2963 Trochodendron aralioides HOM05D007950 ORTHO05D009951 8.2e-21 103.2 68 75.0
PGR102G0372 Punica granatum HOM05D007950 ORTHO05D009951 3.1e-20 101.3 70 65.7
CiPaw.03G232500 Carya illinoinensis HOM05D007950 ORTHO05D009951 4.1e-20 100.9 69 73.9
CiPaw.02G150700 Carya illinoinensis HOM05D007950 ORTHO05D009951 6.9e-20 100.1 68 75.0
Nn8g39199 Nelumbo nucifera HOM05D007950 ORTHO05D009951 6.9e-20 100.1 70 72.9
Sc10g0007380 Simmondsia chinensis HOM05D007950 ORTHO05D009951 3.4e-19 97.8 68 69.1
Gohir.D03G063400 Gossypium hirsutum HOM05D007950 ORTHO05D009951 5.9e-19 97.1 70 70.0
Gorai.002G059800 Gossypium raimondii HOM05D007950 ORTHO05D009951 5.9e-19 97.1 70 70.0
Potri.001G181701 Populus trichocarpa HOM05D007950 ORTHO05D009951 1.7e-18 95.5 67 71.6
Gohir.1Z049586 Gossypium hirsutum HOM05D007950 ORTHO05D009951 2.2e-18 95.1 70 68.6
arahy.Tifrunner.gnm1.ann1.7G47EE Arachis hypogaea HOM05D007950 ORTHO05D009951 2.9e-18 94.7 70 65.7
arahy.Tifrunner.gnm1.ann1.U6R6BR Arachis hypogaea HOM05D007950 ORTHO05D009951 2.9e-18 94.7 70 65.7
CSS0048253 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 2.9e-18 94.7 67 73.1
CSS0032282 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 8.5e-18 93.2 67 71.6
Phvul.003G020900 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 8.5e-18 93.2 70 62.9
Nn2g11757 Nelumbo nucifera HOM05D007950 ORTHO05D009951 1.1e-17 92.8 70 65.7
Manes.03G020101 Manihot esculenta HOM05D007950 ORTHO05D009951 1.4e-17 92.4 70 67.1
Gohir.D05G129500 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.9e-17 92.0 68 69.1
Eucgr.J02984 Eucalyptus grandis HOM05D007950 ORTHO05D009951 4.2e-17 90.9 61 73.8
Gohir.A05G130600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 5.5e-17 90.5 68 67.6
Psat1g042280 Pisum sativum HOM05D007950 ORTHO05D009951 5.5e-17 90.5 70 62.9
Lj3g0016273 Lotus japonicus HOM05D007950 ORTHO05D009951 2.7e-16 88.2 70 62.9
Manes.11G045700 Manihot esculenta HOM05D007950 ORTHO05D009951 8.0e-16 86.7 68 66.2
Haze_16407 Corylus avellana HOM05D007950 ORTHO05D009951 2.3e-15 85.1 70 64.3
Haze_16408 Corylus avellana HOM05D007950 ORTHO05D009951 2.3e-15 85.1 70 64.3
Medtr6g086645 Medicago truncatula HOM05D007950 ORTHO05D009951 5.2e-15 84.0 68 61.8
TPR.G35274 Trifolium pratense HOM05D007950 ORTHO05D009951 2.0e-14 82.0 66 56.1
ATR0980G014 Amborella trichopoda HOM05D007950 ORTHO05D009951 2.6e-14 81.6 70 57.1
CDE06G0019 Ceratophyllum demersum HOM05D007950 ORTHO05D009951 2.6e-14 81.6 67 61.2
Glyma.09G123700 Glycine max HOM05D007950 ORTHO05D009951 2.6e-14 81.6 70 61.4
Potri.003G054001 Populus trichocarpa HOM05D007950 ORTHO05D009951 2.6e-14 81.6 67 65.7
Cc06_g09630 Coffea canephora HOM05D007950 ORTHO05D009951 3.3e-14 81.3 61 67.2
Lalb_Chr04g0262731 Lupinus albus HOM05D007950 ORTHO05D009951 5.7e-14 80.5 70 55.7
TPR.G24171 Trifolium pratense HOM05D007950 ORTHO05D009951 5.7e-14 80.5 66 60.6
Medtr4g012610 Medicago truncatula HOM05D007950 ORTHO05D009951 7.4e-14 80.1 70 57.1
Psat7g251240 Pisum sativum HOM05D007950 ORTHO05D009951 7.4e-14 80.1 70 57.1
Glyma.08G206200 Glycine max HOM05D007950 ORTHO05D009951 8.2e-13 76.6 66 59.1
Prupe.3G070100 Prunus persica HOM05D007950 ORTHO05D009951 8.2e-13 76.6 74 63.5
FAN05G0591 Fragaria x ananassa HOM05D007950 ORTHO05D009951 1.1e-12 76.3 71 57.7
Cc04_g03310 Coffea canephora HOM05D007950 ORTHO05D009951 1.4e-12 75.9 68 58.8
Medtr4g012580 Medicago truncatula HOM05D007950 ORTHO05D009951 1.8e-12 75.5 66 56.1
Sc08g0007460 Simmondsia chinensis HOM05D007950 ORTHO05D009951 1.8e-12 75.5 68 60.3
FAN14G2438 Fragaria x ananassa HOM05D007950 ORTHO05D009951 2.4e-12 75.1 71 57.7
SalBow2G2396 Salvia bowleyana HOM05D007950 ORTHO05D009951 2.4e-12 75.1 53 64.2
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 2.0e-11 72.0 65 58.5
Dinv36624 Davidia involucrata HOM05D007950 ORTHO05D009951 2.6e-11 71.6 68 60.3
Migut.D01581 Erythranthe guttata HOM05D007950 ORTHO05D009951 3.5e-11 71.2 65 53.8
Lsat_1_v5_gn_5_103401 Lactuca sativa HOM05D007950 ORTHO05D009951 4.5e-11 70.9 70 52.9
Phvul.010G150100 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 1.0e-10 69.7 70 51.4
arahy.Tifrunner.gnm1.ann1.6Z76EK Arachis hypogaea HOM05D007950 ORTHO05D009951 1.3e-10 69.3 72 52.8
TPR.G8534 Trifolium pratense HOM05D007950 ORTHO05D009951 3.8e-10 67.8 66 51.5
HanXRQChr09g0275201 Helianthus annuus HOM05D007950 ORTHO05D009951 8.5e-10 66.6 74 45.9
Sed0000041 Sechium edule HOM05D007950 ORTHO05D009951 1.1e-09 66.2 64 53.1
Thhalv10012203m.g Eutrema salsugineum HOM05D007950 ORTHO05D009951 8.0e-08 60.1 62 50.0
Medtr6g086730 Medicago truncatula HOM05D007950 ORTHO05D009951 2.3e-07 58.5 50 60.0
Os06g0686900 Oryza sativa ssp. japonica HOM05D018973 ORTHO05D009951 8.8e-07 56.6 68 47.1


User provided reference genes

Program Settings