Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g04670 Fragaria vesca HOM05D004541 ORTHO05D006163 0.0e+00 1614.0 789 100.0
FAN23G1653 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1556.2 764 98.7
FAN19G1993 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1513.8 734 100.0
RcHm_v2.0_Chr2g0090281 Rosa chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1498.0 764 95.3
Prupe.7G232300 Prunus persica HOM05D004541 ORTHO05D006163 0.0e+00 1434.9 764 89.8
FAN26G2455 Fragaria x ananassa HOM05D004541 ORTHO05D006163 0.0e+00 1432.2 714 96.9
MD15G1183900 Malus domestica HOM05D004541 ORTHO05D006163 0.0e+00 1416.0 764 89.3
CANSAT56G4378 Cannabis sativa HOM05D004541 ORTHO05D006163 0.0e+00 1388.2 764 86.0
CANSAT56G2738 Cannabis sativa HOM05D004541 ORTHO05D006163 0.0e+00 1386.3 764 85.9
Thecc.09G109100 Theobroma cacao HOM05D004541 ORTHO05D006163 0.0e+00 1379.4 789 84.0
CsaV3_1G024300 Cucumis sativus L. HOM05D004541 ORTHO05D006163 0.0e+00 1367.8 776 83.6
Glyma.09G191400 Glycine max HOM05D004541 ORTHO05D006163 0.0e+00 1365.5 790 82.9
Eucgr.C03820 Eucalyptus grandis HOM05D004541 ORTHO05D006163 0.0e+00 1361.7 762 84.8
Manes.16G115100 Manihot esculenta HOM05D004541 ORTHO05D006163 0.0e+00 1357.8 764 84.7
CiPaw.03G231000 Carya illinoinensis HOM05D004541 ORTHO05D006163 0.0e+00 1355.1 764 84.8
ClCG06G008600 Citrullus lanatus HOM05D004541 ORTHO05D006163 0.0e+00 1354.3 764 84.3
Duzib187G1831 Durio zibethinus HOM05D004541 ORTHO05D006163 0.0e+00 1354.0 764 84.3
Ca_20226_v3 Cicer arietinum L. HOM05D004541 ORTHO05D006163 0.0e+00 1352.4 764 83.6
Actinidia07413 Actinidia chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1352.0 764 83.5
CSS0034093 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 0.0e+00 1352.0 764 83.8
GSVIVG01015382001 Vitis vinifera HOM05D004541 ORTHO05D006163 0.0e+00 1351.7 764 84.0
vmacro06222 Vaccinium macrocarpon HOM05D004541 ORTHO05D006163 0.0e+00 1345.9 764 83.9
Atru.chr7.1362 Acer truncatum HOM05D004541 ORTHO05D006163 0.0e+00 1345.5 764 84.0
Gohir.A08G241500 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1345.5 789 82.3
Dinv41612 Davidia involucrata HOM05D004541 ORTHO05D006163 0.0e+00 1343.2 764 84.3
COL.COLO4_34849 Corchorus olitorius HOM05D004541 ORTHO05D006163 0.0e+00 1341.6 764 83.4
Glyma.07G085500 Glycine max HOM05D004541 ORTHO05D006163 0.0e+00 1340.5 765 83.7
TAR383G1084 Trochodendron aralioides HOM05D004541 ORTHO05D006163 0.0e+00 1340.5 771 83.5
Medtr6g087520 Medicago truncatula HOM05D004541 ORTHO05D006163 0.0e+00 1339.3 765 83.7
MELO3C025349.2 Cucumis melo HOM05D004541 ORTHO05D006163 0.0e+00 1337.4 764 83.4
Phvul.004G164500 Phaseolus vulgaris HOM05D004541 ORTHO05D006163 0.0e+00 1336.2 764 82.3
Ciclev10007326m.g Citrus clementina HOM05D004541 ORTHO05D006163 0.0e+00 1334.3 764 83.0
QL02p040000 Quercus lobata HOM05D004541 ORTHO05D006163 0.0e+00 1333.2 763 84.3
Psat1g043400 Pisum sativum HOM05D004541 ORTHO05D006163 0.0e+00 1332.8 765 83.8
Lalb_Chr09g0331191 Lupinus albus HOM05D004541 ORTHO05D006163 0.0e+00 1331.6 764 82.5
Gohir.A05G023600 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1327.0 764 82.3
Gorai.004G280300 Gossypium raimondii HOM05D004541 ORTHO05D006163 0.0e+00 1326.6 764 82.6
VMungo0464G1118 Vigna mungo HOM05D004541 ORTHO05D006163 0.0e+00 1323.9 763 81.9
Gohir.D08G262300 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1321.2 789 80.9
MD02G1045500 Malus domestica HOM05D004541 ORTHO05D006163 0.0e+00 1319.3 689 91.1
Potri.018G081400 Populus trichocarpa HOM05D004541 ORTHO05D006163 0.0e+00 1318.5 764 82.7
Lj7A652G69 Lonicera japonica HOM05D004541 ORTHO05D006163 0.0e+00 1318.1 762 82.4
TPR.G10041 Trifolium pratense HOM05D004541 ORTHO05D006163 0.0e+00 1318.1 765 82.5
Sed0019002 Sechium edule HOM05D004541 ORTHO05D006163 0.0e+00 1316.2 764 82.6
CSS0021602 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 0.0e+00 1314.7 733 84.6
Gorai.009G025200 Gossypium raimondii HOM05D004541 ORTHO05D006163 0.0e+00 1314.7 764 81.5
Nitab4.5_0007565g0030 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1309.3 767 81.5
Lj2g0016785 Lotus japonicus HOM05D004541 ORTHO05D006163 0.0e+00 1307.4 761 82.0
TWI34G1287 Tripterygium wilfordii HOM05D004541 ORTHO05D006163 0.0e+00 1307.0 763 81.0
Cc06_g09760 Coffea canephora HOM05D004541 ORTHO05D006163 0.0e+00 1300.8 762 80.1
Sabra18G0068500 Salix brachista HOM05D004541 ORTHO05D006163 0.0e+00 1299.3 734 84.2
Aqoxy7G01635 Aquilegia oxysepala HOM05D004541 ORTHO05D006163 0.0e+00 1292.7 767 81.6
Migut.J01157 Erythranthe guttata HOM05D004541 ORTHO05D006163 0.0e+00 1290.0 762 79.9
HanXRQChr10g0318611 Helianthus annuus HOM05D004541 ORTHO05D006163 0.0e+00 1289.2 765 79.3
ECA234G1988 Erigeron canadensis HOM05D004541 ORTHO05D006163 0.0e+00 1287.7 764 79.2
PGR102G1372 Punica granatum HOM05D004541 ORTHO05D006163 0.0e+00 1287.3 764 79.8
CAN.G608.21 Capsicum annuum HOM05D004541 ORTHO05D006163 0.0e+00 1284.6 769 79.2
THA.LOC104804980 Tarenaya hassleriana HOM05D004541 ORTHO05D006163 0.0e+00 1283.9 765 80.4
Gohir.D05G025100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1281.2 764 80.5
Solyc09g007300.3 Solanum lycopersicum HOM05D004541 ORTHO05D006163 0.0e+00 1280.0 764 80.0
PSO210G2419 Papaver somniferum HOM05D004541 ORTHO05D006163 0.0e+00 1278.8 773 79.2
Sp6g24730 Schrenkiella parvula HOM05D004541 ORTHO05D006163 0.0e+00 1278.1 761 80.4
Rhsim03G0241000 Rhododendron simsii HOM05D004541 ORTHO05D006163 0.0e+00 1276.2 756 81.0
Carub.0006s1801 Capsella rubella HOM05D004541 ORTHO05D006163 0.0e+00 1275.4 761 79.2
Oeu018244.1 Olea europaea HOM05D004541 ORTHO05D006163 0.0e+00 1274.2 765 79.5
AT5G19660 Arabidopsis thaliana HOM05D004541 ORTHO05D006163 0.0e+00 1271.1 761 79.8
A03p09570 Brassica napus HOM05D004541 ORTHO05D006163 0.0e+00 1271.1 761 79.9
Hund26211 Selenicereus undatus HOM05D004541 ORTHO05D006163 0.0e+00 1271.1 764 78.5
BolC3t13584H Brassica oleracea HOM05D004541 ORTHO05D006163 0.0e+00 1270.4 761 79.8
CARHR193250 Cardamine hirsuta HOM05D004541 ORTHO05D006163 0.0e+00 1270.0 761 79.5
C03p11140 Brassica napus HOM05D004541 ORTHO05D006163 0.0e+00 1269.6 761 79.8
Thhalv10012541m.g Eutrema salsugineum HOM05D004541 ORTHO05D006163 0.0e+00 1269.6 760 79.7
PSO210G5975 Papaver somniferum HOM05D004541 ORTHO05D006163 0.0e+00 1269.6 773 78.5
Duzib168G0462 Durio zibethinus HOM05D004541 ORTHO05D006163 0.0e+00 1264.2 723 82.7
AL6G31170 Arabidopsis lyrata HOM05D004541 ORTHO05D006163 0.0e+00 1263.1 760 79.3
Aa31LG3G3200 Aethionema arabicum HOM05D004541 ORTHO05D006163 0.0e+00 1259.6 754 79.8
MBI01_g28040_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 0.0e+00 1258.8 742 80.9
Lsat_1_v5_gn_5_103081 Lactuca sativa HOM05D004541 ORTHO05D006163 0.0e+00 1258.4 768 78.3
BraA03t10274Z Brassica rapa HOM05D004541 ORTHO05D006163 0.0e+00 1256.9 784 77.6
unitig_8.g3279 Utricularia gibba HOM05D004541 ORTHO05D006163 0.0e+00 1254.6 755 77.4
DCAR_024689 Daucus carota HOM05D004541 ORTHO05D006163 0.0e+00 1250.0 733 80.8
AUR62010981 Chenopodium quinoa HOM05D004541 ORTHO05D006163 0.0e+00 1244.2 735 79.7
Nn8g39153 Nelumbo nucifera HOM05D004541 ORTHO05D006163 0.0e+00 1243.0 776 76.8
BcaB01g04837 Brassica carinata HOM05D004541 ORTHO05D006163 0.0e+00 1242.6 761 78.7
Sc18g0001290 Simmondsia chinensis HOM05D004541 ORTHO05D006163 0.0e+00 1235.7 714 81.5
EL10Ac8g18481 Beta vulgaris HOM05D004541 ORTHO05D006163 0.0e+00 1234.2 733 79.7
Peaxi162Scf00005g04811 Petunia axillaris HOM05D004541 ORTHO05D006163 0.0e+00 1228.0 764 77.5
Gohir.D05G025033 Gossypium hirsutum HOM05D004541 ORTHO05D006163 0.0e+00 1227.2 764 77.7
SGA_v2.0_scaffold17G08177 Striga asiatica HOM05D004541 ORTHO05D006163 0.0e+00 1224.9 715 81.3
AUR62021490 Chenopodium quinoa HOM05D004541 ORTHO05D006163 0.0e+00 1220.3 764 76.8
VMungo0464G1847 Vigna mungo HOM05D004541 ORTHO05D006163 0.0e+00 1219.5 761 76.6
Nitab4.5_0001142g0040 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1210.7 713 81.2
Nitab4.5_0000754g0130 Nicotiana tabacum HOM05D004541 ORTHO05D006163 0.0e+00 1202.2 732 77.0
SHI02736 Sapria himalayana HOM05D004541 ORTHO05D006163 0.0e+00 1201.4 765 74.9
Dinv36641 Davidia involucrata HOM05D004541 ORTHO05D006163 0.0e+00 1178.3 715 80.4
CDE05G1732 Ceratophyllum demersum HOM05D004541 ORTHO05D006163 0.0e+00 1174.5 772 72.9
ATR0315G070 Amborella trichopoda HOM05D004541 ORTHO05D006163 0.0e+00 1171.4 770 73.8
Cpa.g.sc23.98 Carica papaya HOM05D004541 ORTHO05D006163 0.0e+00 1149.0 785 72.0
HPP92_003938 Vanilla planifolia HOM05D004541 ORTHO05D006163 0.0e+00 1149.0 700 77.6
Ah.14g082120 Amaranthus hybridus HOM05D004541 ORTHO05D006163 0.0e+00 1146.0 714 76.8
Haze_25754 Corylus avellana HOM05D004541 ORTHO05D006163 0.0e+00 1124.4 655 82.4
CAN.G933.11 Capsicum annuum HOM05D004541 ORTHO05D006163 0.0e+00 1104.7 764 70.0
Lsat_1_v5_gn_8_105101 Lactuca sativa HOM05D004541 ORTHO05D006163 0.0e+00 1102.8 725 72.1
Mapoly0155s0018 Marchantia polymorpha HOM05D004541 ORTHO05D006163 2.8e-303 1045.0 843 62.3
Sopen00g009260 Solanum pennellii HOM05D004541 ORTHO05D006163 4.8e-303 1044.3 647 77.3
SMO347G0168 Selaginella moellendorffii HOM05D004541 ORTHO05D006163 5.7e-288 994.2 692 67.2
Os06g0163500 Oryza sativa ssp. japonica HOM05D004541 ORTHO05D006163 2.0e-280 969.1 679 67.2
Pp3c3_30280 Physcomitrium patens HOM05D004541 ORTHO05D006163 1.7e-279 966.1 763 63.2
CSS0043571 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 5.4e-270 934.5 663 71.3
AagrBONN_evm.TU.Sc2ySwM_344.4490 Anthoceros agrestis HOM05D004541 ORTHO05D006163 4.4e-256 888.3 556 74.3
SEGI_28317 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 1.5e-243 846.7 553 71.2
Nitab4.5_0006929g0020 Nicotiana tabacum HOM05D004541 ORTHO05D006163 4.2e-238 828.6 677 61.7
Zm00001eb375700 Zea mays HOM05D004541 ORTHO05D006163 1.5e-235 820.1 597 64.7
SEGI_41546 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 1.2e-232 810.4 461 82.2
MCO08G100 Micromonas commoda HOM05D004541 ORTHO05D006163 2.6e-224 782.7 701 56.1
Cre14.g628800 Chlamydomonas reinhardtii HOM05D004541 ORTHO05D006163 3.6e-213 745.7 600 58.8
PRCOL_00005929 Prasinoderma coloniale HOM05D004541 ORTHO05D006163 6.7e-212 741.5 654 55.2
PGSC0003DMG400017594 Solanum tuberosum HOM05D004541 ORTHO05D006163 5.0e-199 698.7 528 65.7
Medtr6g086780 Medicago truncatula HOM05D004541 ORTHO05D006163 2.2e-191 673.3 490 68.6
CAN.G268.4 Capsicum annuum HOM05D004541 ORTHO05D006163 2.5e-190 669.8 512 66.8
Gorai.006G096000 Gossypium raimondii HOM05D004541 ORTHO05D006163 4.1e-84 317.0 168 91.1
CBR_g30873 Chara braunii HOM05D004541 ORTHO05D000800 1.5e-83 315.1 172 88.4
Gohir.A08G250201 Gossypium hirsutum HOM05D004541 ORTHO05D006163 1.2e-80 305.4 157 93.6
Gohir.D07G157100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 1.2e-80 305.4 157 93.6
Gohir.D09G033000 Gossypium hirsutum HOM05D004541 ORTHO05D006163 1.2e-80 305.4 157 93.6
Gohir.A06G119402 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.6e-80 303.9 157 93.0
Gohir.A12G025200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.6e-80 303.9 157 93.0
Gohir.A10G147200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 1.0e-79 302.4 157 93.0
Gohir.D04G083366 Gossypium hirsutum HOM05D004541 ORTHO05D006163 1.8e-79 301.6 154 94.8
Nitab4.5_0000754g0080 Nicotiana tabacum HOM05D004541 ORTHO05D006163 1.1e-76 292.4 629 34.5
SGA_v2.0_scaffold176G39378 Striga asiatica HOM05D004541 ORTHO05D006163 1.8e-68 265.0 221 59.7
Sopen00g009180 Solanum pennellii HOM05D004541 ORTHO05D006163 4.9e-53 213.8 103 96.1
MBI04_g39576_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 7.3e-49 199.9 124 79.8
CBR_g30877 Chara braunii HOM05D004541 ORTHO05D000002 2.6e-46 191.4 126 65.9
BolC9t58517H Brassica oleracea HOM05D004541 ORTHO05D006163 9.2e-44 183.0 144 62.5
Haze_25737 Corylus avellana HOM05D004541 ORTHO05D006163 2.8e-40 171.4 149 61.7
C09p56520 Brassica napus HOM05D004541 ORTHO05D006163 1.2e-38 166.0 129 64.3
BcaC04g19361 Brassica carinata HOM05D002433 ORTHO05D003234 1.9e-36 158.7 168 51.8
CBR_g30889 Chara braunii HOM05D001523 ORTHO05D000184 3.5e-35 154.5 142 52.1
Lsat_1_v5_gn_5_96741 Lactuca sativa HOM05D004541 ORTHO05D006163 7.8e-35 153.3 96 79.2
SEGI_08862 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 1.4e-31 142.5 235 37.0
Haze_25735 Corylus avellana HOM05D004541 ORTHO05D006163 2.6e-30 138.3 86 73.3
CSS0008653 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 4.9e-29 134.0 73 83.6
CSS0038393 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 1.4e-28 132.5 73 82.2
CSS0024771 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D001797 1.9e-28 132.1 76 81.6
Actinidia32680 Actinidia chinensis HOM05D004541 ORTHO05D006163 7.3e-25 120.2 69 84.1
CSS0002864 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D001797 6.2e-24 117.1 57 94.7
Ah.14g082140 Amaranthus hybridus HOM05D004541 ORTHO05D006163 5.8e-14 84.0 40 95.0
Lj3g0016708 Lotus japonicus HOM05D004541 ORTHO05D006163 1.3e-13 82.8 40 95.0
Aa31LG3G3160 Aethionema arabicum HOM05D004541 ORTHO05D058835 1.3e-10 72.8 163 33.7
CBR_g30886 Chara braunii HOM05D000019 ORTHO05D000353 2.5e-09 68.6 34 82.4
Pp3s169_40 Physcomitrium patens HOM05D004541 ORTHO05D012764 2.5e-09 68.6 140 32.9
Haze_15385 Corylus avellana HOM05D000015 ORTHO05D000734 5.8e-06 57.4 82 39.0
MSTRG.26979 Avicennia marina HOM05D000015 ORTHO05D001173 7.6e-06 57.0 94 39.4


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