Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g04450 Fragaria vesca HOM05D000522 ORTHO05D004380 6.1e-126 454.1 227 100.0
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 3.2e-74 282.3 347 52.4
FvH4_1g05350 Fragaria vesca HOM05D000522 ORTHO05D004380 9.3e-74 280.8 351 51.3
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.2e-73 280.4 351 51.3
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.2e-73 280.4 351 51.3
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.6e-73 280.0 347 52.4
FAN28G2217 Fragaria x ananassa HOM05D000522 ORTHO05D004380 2.1e-73 279.6 347 51.9
RcHm_v2.0_Chr2g0091031 Rosa chinensis HOM05D000522 ORTHO05D004380 4.1e-69 265.4 349 49.0
Prupe.7G227300 Prunus persica HOM05D000522 ORTHO05D004380 1.7e-67 260.0 351 47.0
MD02G1056500 Malus domestica HOM05D000522 ORTHO05D004380 7.1e-66 254.6 347 45.8
MD15G1189500 Malus domestica HOM05D000522 ORTHO05D004380 3.5e-65 252.3 351 45.9
CiPaw.04G167000 Carya illinoinensis HOM05D000522 ORTHO05D004380 8.2e-62 241.1 347 44.1
Cfa003289 Carpinus fangiana HOM05D000522 ORTHO05D004380 1.2e-60 237.3 349 43.3
Medtr8g103840 Medicago truncatula HOM05D000522 ORTHO05D004380 7.7e-60 234.6 344 44.2
TPR.G21700 Trifolium pratense HOM05D000522 ORTHO05D004380 7.7e-60 234.6 348 43.7
Lj4g0021382 Lotus japonicus HOM05D000522 ORTHO05D004380 1.0e-59 234.2 351 43.0
QL02p086017 Quercus lobata HOM05D000522 ORTHO05D004380 2.9e-59 232.6 349 43.0
Lalb_Chr05g0222651 Lupinus albus HOM05D000522 ORTHO05D004380 5.0e-59 231.9 347 44.7
Glyma.08G040000 Glycine max HOM05D000522 ORTHO05D004380 6.5e-59 231.5 348 42.0
CSS0022610 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 1.1e-58 230.7 349 43.0
Ca_17345_v3 Cicer arietinum L. HOM05D000522 ORTHO05D004380 1.1e-58 230.7 348 43.1
Glyma.05G232600 Glycine max HOM05D000522 ORTHO05D004380 1.4e-58 230.3 350 42.9
Cpa.g.sc23.137 Carica papaya HOM05D000522 ORTHO05D004380 1.9e-58 229.9 345 42.0
VMungo0251G1337 Vigna mungo HOM05D000522 ORTHO05D004380 1.2e-57 227.3 346 41.6
Psat7g014120 Pisum sativum HOM05D000522 ORTHO05D004380 2.7e-57 226.1 347 42.1
Gohir.D13G202100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 3.6e-57 225.7 349 41.0
Gorai.013G231000 Gossypium raimondii HOM05D000522 ORTHO05D004380 3.6e-57 225.7 349 41.0
Gohir.A13G196800 Gossypium hirsutum HOM05D000522 ORTHO05D004380 4.6e-57 225.3 349 41.0
TWI63G0481 Tripterygium wilfordii HOM05D000522 ORTHO05D004380 4.6e-57 225.3 347 41.2
Lalb_Chr16g0387971 Lupinus albus HOM05D000522 ORTHO05D004380 6.1e-57 224.9 351 42.5
Actinidia20339 Actinidia chinensis HOM05D000522 ORTHO05D004380 1.0e-56 224.2 351 42.5
CsaV3_2G002430 Cucumis sativus L. HOM05D000522 ORTHO05D004380 1.0e-56 224.2 342 42.1
TAR383G0974 Trochodendron aralioides HOM05D000522 ORTHO05D004380 1.0e-56 224.2 350 41.4
PGR102G1361 Punica granatum HOM05D000522 ORTHO05D004380 3.9e-56 222.2 362 42.3
Rhsim03G0244700 Rhododendron simsii HOM05D000522 ORTHO05D004380 8.8e-56 221.1 351 41.9
arahy.Tifrunner.gnm1.ann1.R702JB Arachis hypogaea HOM05D000522 ORTHO05D004380 1.5e-55 220.3 379 40.4
Haze_25684 Corylus avellana HOM05D000522 ORTHO05D004380 2.5e-55 219.5 378 39.4
Sed0015283 Sechium edule HOM05D000522 ORTHO05D004380 2.5e-55 219.5 349 41.3
CANSAT56G3220 Cannabis sativa HOM05D000522 ORTHO05D004380 3.3e-55 219.2 360 40.3
CANSAT56G3667 Cannabis sativa HOM05D000522 ORTHO05D004380 3.3e-55 219.2 360 40.3
MELO3C004545.2 Cucumis melo HOM05D000522 ORTHO05D004380 4.3e-55 218.8 346 41.3
Gorai.001G003700 Gossypium raimondii HOM05D000522 ORTHO05D004380 4.3e-55 218.8 349 40.7
arahy.Tifrunner.gnm1.ann1.E6IMKI Arachis hypogaea HOM05D000522 ORTHO05D004380 5.7e-55 218.4 371 40.7
Gohir.D07G004100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 5.7e-55 218.4 349 40.7
Sc08g0007180 Simmondsia chinensis HOM05D000522 ORTHO05D004380 9.7e-55 217.6 348 40.8
Nn8g39261 Nelumbo nucifera HOM05D000522 ORTHO05D004380 1.7e-54 216.9 345 39.7
Sed0002571 Sechium edule HOM05D000522 ORTHO05D004380 1.7e-54 216.9 343 40.2
Lj7A644G12 Lonicera japonica HOM05D000522 ORTHO05D004380 2.8e-54 216.1 345 40.9
Nitab4.5_0008529g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 2.8e-54 216.1 348 39.1
Potri.006G156350 Populus trichocarpa HOM05D000522 ORTHO05D004380 3.7e-54 215.7 347 39.8
Gohir.A07G003600 Gossypium hirsutum HOM05D000522 ORTHO05D004380 4.8e-54 215.3 349 40.1
Potri.006G155700 Populus trichocarpa HOM05D000522 ORTHO05D004380 4.8e-54 215.3 343 40.5
ClCG11G002610 Citrullus lanatus HOM05D000522 ORTHO05D004380 6.3e-54 214.9 363 39.7
MBI04_g25412_MAGBIO Magnolia biondii HOM05D000522 ORTHO05D004380 6.3e-54 214.9 348 38.8
THA.LOC104808747 Tarenaya hassleriana HOM05D000522 ORTHO05D004380 6.3e-54 214.9 346 40.8
Duzib150G0749 Durio zibethinus HOM05D000522 ORTHO05D004380 8.2e-54 214.5 349 39.5
GSVIVG01015428001 Vitis vinifera HOM05D000522 ORTHO05D004380 8.2e-54 214.5 375 39.2
ECA234G1779 Erigeron canadensis HOM05D000522 ORTHO05D004380 1.1e-53 214.2 350 40.3
Manes.03G069100 Manihot esculenta HOM05D000522 ORTHO05D004380 1.1e-53 214.2 343 40.5
Lsat_1_v5_gn_5_100220 Lactuca sativa HOM05D000522 ORTHO05D004380 1.4e-53 213.8 351 40.5
Ciclev10008327m.g Citrus clementina HOM05D000522 ORTHO05D004380 2.4e-53 213.0 348 39.1
Duzib187G0776 Durio zibethinus HOM05D000522 ORTHO05D004380 3.1e-53 212.6 345 40.0
HanXRQChr10g0317741 Helianthus annuus HOM05D000522 ORTHO05D004380 4.1e-53 212.2 351 39.9
AUR62011027 Chenopodium quinoa HOM05D000522 ORTHO05D004380 5.3e-53 211.8 350 39.7
COL.COLO4_34881 Corchorus olitorius HOM05D000522 ORTHO05D004380 6.9e-53 211.5 349 40.1
Eucgr.C01076 Eucalyptus grandis HOM05D000522 ORTHO05D004380 1.2e-52 210.7 350 39.1
Peaxi162Scf00560g00617 Petunia axillaris HOM05D000522 ORTHO05D004380 1.5e-52 210.3 361 39.1
Actinidia07420 Actinidia chinensis HOM05D000522 ORTHO05D004380 2.0e-52 209.9 348 39.9
Thhalv10025298m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 3.4e-52 209.1 348 39.4
Nitab4.5_0002363g0030 Nicotiana tabacum HOM05D000522 ORTHO05D004380 3.4e-52 209.1 345 38.8
PSO782G3947 Papaver somniferum HOM05D000522 ORTHO05D004380 4.5e-52 208.8 346 38.7
Sp3g22170 Schrenkiella parvula HOM05D000522 ORTHO05D004380 4.5e-52 208.8 343 39.9
Sp7g10940 Schrenkiella parvula HOM05D000522 ORTHO05D004380 4.5e-52 208.8 350 39.1
ATR0037G022 Amborella trichopoda HOM05D000522 ORTHO05D004380 5.9e-52 208.4 347 38.6
Hund09185 Selenicereus undatus HOM05D000522 ORTHO05D004380 5.9e-52 208.4 351 39.3
Thecc.09G114500 Theobroma cacao HOM05D000522 ORTHO05D004380 1.0e-51 207.6 349 39.5
AL3G39830 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 1.3e-51 207.2 346 38.7
CAN.G32.1 Capsicum annuum HOM05D000522 ORTHO05D004380 1.3e-51 207.2 347 38.6
PSO063G3875 Papaver somniferum HOM05D000522 ORTHO05D004380 1.3e-51 207.2 346 38.7
SalBow1G3152 Salvia bowleyana HOM05D000522 ORTHO05D004380 1.7e-51 206.8 346 39.3
Aqoxy7G03774 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 2.2e-51 206.5 344 37.8
AT4G13360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 2.2e-51 206.5 350 38.3
Sopen05g015250 Solanum pennellii HOM05D000522 ORTHO05D004380 3.8e-51 205.7 343 38.5
CARHR100460 Cardamine hirsuta HOM05D000522 ORTHO05D004380 8.5e-51 204.5 343 39.7
Os06g0594100 Oryza sativa ssp. japonica HOM05D000522 ORTHO05D004380 8.5e-51 204.5 348 38.2
Solyc05g018417.1 Solanum lycopersicum HOM05D000522 ORTHO05D004380 8.5e-51 204.5 344 38.1
BraA03t13500Z Brassica rapa HOM05D000522 ORTHO05D004380 1.1e-50 204.1 350 38.9
BcaB03g14587 Brassica carinata HOM05D000522 ORTHO05D004380 1.4e-50 203.8 347 38.9
CAN.G300.3 Capsicum annuum HOM05D000522 ORTHO05D004380 1.4e-50 203.8 346 39.0
Carub.0003s2470 Capsella rubella HOM05D000522 ORTHO05D004380 4.2e-50 202.2 346 39.3
AUR62033399 Chenopodium quinoa HOM05D000522 ORTHO05D004380 4.2e-50 202.2 380 36.8
A03p43630 Brassica napus HOM05D000522 ORTHO05D004380 5.5e-50 201.8 347 38.6
Nitab4.5_0002705g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 7.2e-50 201.4 334 39.5
AL9U10300 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 9.4e-50 201.1 348 38.2
Thhalv10002535m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 9.4e-50 201.1 349 37.8
Aqoxy7G01827 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 2.7e-49 199.5 344 37.5
Migut.K00465 Erythranthe guttata HOM05D000522 ORTHO05D004380 2.7e-49 199.5 346 37.9
BcaC01g03316 Brassica carinata HOM05D000522 ORTHO05D004380 3.6e-49 199.1 347 38.6
A04p08740 Brassica napus HOM05D000522 ORTHO05D004380 4.7e-49 198.7 348 37.6
Aa31LG8G11100 Aethionema arabicum HOM05D000522 ORTHO05D004380 7.9e-49 198.0 348 36.8
MSTRG.26353 Avicennia marina HOM05D000522 ORTHO05D004380 7.9e-49 198.0 346 36.7
EL10Ac8g18536 Beta vulgaris HOM05D000522 ORTHO05D004380 7.9e-49 198.0 350 38.3
HanXRQChr05g0138321 Helianthus annuus HOM05D000522 ORTHO05D004380 7.9e-49 198.0 349 39.0
C03p53740 Brassica napus HOM05D000522 ORTHO05D004380 1.0e-48 197.6 347 38.6
BolC3t17634H Brassica oleracea HOM05D000522 ORTHO05D004380 1.0e-48 197.6 347 38.6
CARHR218930 Cardamine hirsuta HOM05D000522 ORTHO05D004380 1.0e-48 197.6 347 37.2
Sopen07g011860 Solanum pennellii HOM05D000522 ORTHO05D004380 1.4e-48 197.2 347 37.8
BcaC02g09431 Brassica carinata HOM05D000522 ORTHO05D004380 2.3e-48 196.4 348 37.4
C04p42550 Brassica napus HOM05D000522 ORTHO05D004380 2.3e-48 196.4 348 37.4
BolC4t25830H Brassica oleracea HOM05D000522 ORTHO05D004380 2.3e-48 196.4 348 37.4
BraA04t16571Z Brassica rapa HOM05D000522 ORTHO05D004380 3.9e-48 195.7 348 37.4
Aa31LG9G4380 Aethionema arabicum HOM05D000522 ORTHO05D004380 5.1e-48 195.3 345 37.7
BcaB03g16093 Brassica carinata HOM05D000522 ORTHO05D004380 6.7e-48 194.9 348 37.1
AT3G24360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 8.8e-48 194.5 348 37.6
Cc06_g09360 Coffea canephora HOM05D000522 ORTHO05D004380 5.7e-47 191.8 376 36.2
Carub.0007s2921 Capsella rubella HOM05D000522 ORTHO05D004380 7.4e-47 191.4 349 37.8
Lsat_1_v5_gn_8_94761 Lactuca sativa HOM05D000522 ORTHO05D004380 7.4e-47 191.4 344 36.9
PSO210G0429 Papaver somniferum HOM05D000522 ORTHO05D004380 7.4e-47 191.4 340 37.6
Ah.09g227710 Amaranthus hybridus HOM05D000522 ORTHO05D004380 9.7e-47 191.0 339 38.6
ECA236G2754 Erigeron canadensis HOM05D000522 ORTHO05D004380 9.7e-47 191.0 341 36.1
HPP92_006445 Vanilla planifolia HOM05D000522 ORTHO05D004380 8.2e-46 188.0 344 38.4
Nitab4.5_0008625g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 2.4e-45 186.4 327 37.9
Duzib168G0832 Durio zibethinus HOM05D000522 ORTHO05D004380 1.2e-44 184.1 315 39.0
SGA_v2.0_scaffold183G39892 Striga asiatica HOM05D000522 ORTHO05D004380 1.2e-44 184.1 363 33.3
Sabra06G0123500 Salix brachista HOM05D000522 ORTHO05D004380 4.5e-44 182.2 440 32.5
CDE02G2108 Ceratophyllum demersum HOM05D000522 ORTHO05D004380 2.7e-41 172.9 347 33.4
Dinv41579 Davidia involucrata HOM05D000993 ORTHO05D004380 2.3e-40 169.9 316 38.3
unitig_46.g18395 Utricularia gibba HOM05D000522 ORTHO05D004380 3.0e-40 169.5 412 31.1
AUR62033413 Chenopodium quinoa HOM05D000522 ORTHO05D004380 6.7e-40 168.3 340 33.8
Peaxi162Scf00552g00512 Petunia axillaris HOM05D000522 ORTHO05D004380 1.5e-39 167.2 285 38.9
QL02p086054 Quercus lobata HOM05D000522 ORTHO05D004380 2.4e-37 159.8 149 61.7
CSS0032661 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 5.3e-37 158.7 139 62.6
Eucgr.C04134 Eucalyptus grandis HOM05D000522 ORTHO05D004380 7.0e-37 158.3 345 35.9
vmacro06197 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 7.0e-37 158.3 141 59.6
Psat7g012360 Pisum sativum HOM05D000522 ORTHO05D004380 2.6e-36 156.4 140 62.1
Atru.chr7.1299 Acer truncatum HOM05D000522 ORTHO05D004380 4.5e-36 155.6 138 60.1
SMO147G0048 Selaginella moellendorffii HOM05D000522 ORTHO05D004380 5.9e-36 155.2 340 34.1
DCAR_012089 Daucus carota HOM05D000522 ORTHO05D004380 1.7e-35 153.7 138 58.0
Pp3c14_25790 Physcomitrium patens HOM05D000522 ORTHO05D004380 1.7e-35 153.7 354 33.3
vmacro06199 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 1.7e-35 153.7 140 61.4
Phvul.002G314900 Phaseolus vulgaris HOM05D000522 ORTHO05D004380 5.0e-35 152.1 140 60.7
Hund26120 Selenicereus undatus HOM05D000522 ORTHO05D004380 6.5e-35 151.8 313 36.4
Lj7C643G7 Lonicera japonica HOM05D000522 ORTHO05D004380 3.2e-34 149.4 133 60.9
HanXRQChr10g0317641 Helianthus annuus HOM05D000522 ORTHO05D004380 4.7e-33 145.6 140 57.9
Oeu058085.3 Olea europaea HOM05D000522 ORTHO05D004380 4.7e-33 145.6 138 56.5
Zm00001eb385980 Zea mays HOM05D000522 ORTHO05D004380 6.1e-33 145.2 137 56.9
Solyc05g018410.3 Solanum lycopersicum HOM05D000522 ORTHO05D004380 2.3e-32 143.3 139 54.7
AUR62033410 Chenopodium quinoa HOM05D000522 ORTHO05D004380 4.0e-32 142.5 300 34.7
Pp3c2_2910 Physcomitrium patens HOM05D000522 ORTHO05D004380 1.2e-31 141.0 343 31.5
HanXRQChr13g0424731 Helianthus annuus HOM05D000522 ORTHO05D004380 2.6e-31 139.8 140 57.1
SEGI_36085 Sequoiadendron giganteum HOM05D000522 ORTHO05D004380 3.7e-30 136.0 141 51.1
MD02G1053900 Malus domestica HOM05D000522 ORTHO05D004380 3.1e-29 132.9 142 54.9
Nn2g11819 Nelumbo nucifera HOM05D000522 ORTHO05D004380 2.7e-28 129.8 269 33.5
AagrBONN_evm.TU.Sc2ySwM_340.302 Anthoceros agrestis HOM05D000522 ORTHO05D004380 1.0e-27 127.9 341 29.0
Mapoly0126s0026 Marchantia polymorpha HOM05D000522 ORTHO05D004380 3.8e-27 125.9 350 28.6
AUR62011039 Chenopodium quinoa HOM05D000522 ORTHO05D004380 2.5e-26 123.2 167 43.7
DCAR_012088 Daucus carota HOM05D000522 ORTHO05D004380 2.6e-23 113.2 71 70.4
Ah.14g081460 Amaranthus hybridus HOM05D000522 ORTHO05D004380 1.3e-22 110.9 67 70.1
Solyc07g022880.3 Solanum lycopersicum HOM05D000522 ORTHO05D004380 1.1e-21 107.8 67 70.1
A03p21310 Brassica napus HOM05D000522 ORTHO05D004380 5.4e-21 105.5 70 65.7
BraA03t11366Z Brassica rapa HOM05D000522 ORTHO05D004380 5.4e-21 105.5 70 65.7
vmacro08116 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 2.3e-19 100.1 161 41.6
BraA03t11074Z Brassica rapa HOM05D000522 ORTHO05D004380 1.9e-18 97.1 69 62.3
BcaC04g22501 Brassica carinata HOM05D000522 ORTHO05D004380 5.6e-18 95.5 70 61.4
MD02G1052600 Malus domestica HOM05D000522 ORTHO05D247921 1.6e-17 94.0 122 49.2
MD02G1055400 Malus domestica HOM05D000522 ORTHO05D004380 3.6e-17 92.8 93 54.8
A01p12550 Brassica napus HOM05D000522 ORTHO05D004380 6.1e-17 92.0 70 60.0
arahy.Tifrunner.gnm1.ann1.A1ITM9 Arachis hypogaea HOM05D000522 ORTHO05D004380 3.0e-16 89.7 52 75.0
vmacro11392 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 2.0e-15 87.0 80 57.5
vmacro11394 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 2.0e-15 87.0 80 57.5
HanXRQChr10g0317691 Helianthus annuus HOM05D000522 ORTHO05D024576 1.7e-14 84.0 84 59.5
RcHm_v2.0_Chr2g0092761 Rosa chinensis HOM05D000522 ORTHO05D004380 6.4e-14 82.0 84 57.1
RcHm_v2.0_Chr2g0092831 Rosa chinensis HOM05D000522 ORTHO05D004380 6.4e-14 82.0 84 57.1
vmacro06198 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 1.1e-13 81.3 139 39.6
MD02G1055800 Malus domestica HOM05D000522 ORTHO05D004380 1.0e-11 74.7 60 61.7
Oeu055871.1 Olea europaea HOM05D000522 ORTHO05D004380 1.9e-10 70.5 67 56.7
vmacro08382 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 6.2e-09 65.5 51 62.7
Hma1.2p1_2585F.1_g324930 Hydrangea macrophylla HOM05D000522 ORTHO05D004380 8.0e-09 65.1 44 63.6
BolC9t53289H Brassica oleracea HOM05D000522 ORTHO05D004380 1.8e-08 63.9 38 65.8
MD02G1053000 Malus domestica HOM05D000522 ORTHO05D004380 5.2e-08 62.4 32 78.1
MD02G1054200 Malus domestica HOM05D000522 ORTHO05D004380 5.2e-08 62.4 126 36.5
EL10Ac1g01056 Beta vulgaris HOM05D000522 ORTHO05D088334 2.6e-07 60.1 44 68.2
Hma1.2p1_1931F.1_g308000 Hydrangea macrophylla HOM05D000522 ORTHO05D013647 2.6e-07 60.1 45 64.4
Nitab4.5_0005205g0020 Nicotiana tabacum HOM05D000522 ORTHO05D285514 2.6e-07 60.1 68 45.6
CSS0005666 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D033858 3.4e-07 59.7 53 58.5
Rhsim03G0245800 Rhododendron simsii HOM05D000007 ORTHO05D013648 4.4e-07 59.3 58 58.6


User provided reference genes

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