Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 2.2e-197 692.2 368 100.0
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 8.8e-191 670.2 392 93.4
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 9.5e-185 650.2 392 90.8
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 2.8e-168 595.5 334 88.3
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 8.3e-165 583.9 302 95.7
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 4.5e-134 481.9 338 74.6
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 7.9e-123 444.5 301 76.7
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 1.4e-116 423.7 336 67.6
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 4.6e-115 418.7 377 62.6
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 1.7e-112 410.2 342 65.2
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 4.1e-111 405.6 337 62.9
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 4.5e-110 402.1 339 67.3
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 7.7e-110 401.4 342 63.5
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 2.2e-109 399.8 338 63.9
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 7.4e-105 384.8 335 64.2
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 1.3e-104 384.0 308 66.6
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.7e-104 383.6 343 62.1
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 2.0e-102 376.7 341 61.9
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 8.5e-101 371.3 308 66.6
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 2.1e-99 366.7 340 60.6
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 3.6e-99 365.9 342 62.3
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 6.1e-99 365.2 337 60.2
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 5.2e-98 362.1 343 59.2
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 6.7e-98 361.7 334 59.9
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 1.5e-97 360.5 340 59.7
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 3.3e-97 359.4 310 65.2
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 3.3e-97 359.4 307 65.5
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 4.4e-97 359.0 351 57.5
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 5.7e-97 358.6 357 59.1
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 5.7e-97 358.6 351 57.3
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 1.3e-96 357.5 339 56.6
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 1.6e-94 350.5 353 58.4
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 2.0e-94 350.1 350 56.9
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 7.7e-94 348.2 341 58.9
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 2.2e-93 346.7 314 64.0
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 1.9e-92 343.6 366 56.0
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 3.6e-91 339.3 304 63.2
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 2.6e-89 333.2 339 58.1
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 3.7e-88 329.3 308 61.4
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 6.3e-88 328.6 299 60.9
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 4.1e-87 325.9 308 62.7
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 7.0e-87 325.1 322 57.1
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 9.1e-87 324.7 364 55.2
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 1.6e-86 323.9 386 51.8
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 2.7e-86 323.2 320 60.0
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 1.0e-85 321.2 346 54.9
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 1.3e-85 320.9 411 47.7
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 2.2e-85 320.1 340 59.4
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 3.8e-85 319.3 311 58.8
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 1.9e-84 317.0 342 55.3
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 3.2e-84 316.2 322 55.6
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 7.2e-84 315.1 338 55.6
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 1.6e-83 313.9 395 51.1
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 3.6e-83 312.8 340 53.8
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.3e-82 310.1 335 56.7
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 4.0e-82 309.3 327 54.4
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 4.4e-81 305.8 353 54.4
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 5.7e-81 305.4 307 57.7
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 1.3e-80 304.3 349 52.1
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 1.7e-80 303.9 309 57.3
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 3.7e-80 302.8 345 55.7
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 8.3e-80 301.6 358 50.8
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 5.4e-79 298.9 324 53.1
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 2.9e-77 293.1 310 56.5
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 1.2e-75 287.7 332 53.9
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 6.1e-75 285.4 334 50.0
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 4.0e-74 282.7 340 50.9
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 2.0e-73 280.4 383 48.6
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 5.7e-73 278.9 318 52.8
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 1.7e-72 277.3 339 53.7
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 4.9e-72 275.8 337 51.3
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 4.9e-72 275.8 337 51.3
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 8.3e-72 275.0 231 67.1
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 2.7e-70 270.0 352 50.9
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 5.9e-70 268.9 305 49.5
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 8.9e-66 255.0 278 52.9
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 3.4e-65 253.1 307 51.5
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 2.2e-64 250.4 378 45.8
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 3.7e-64 249.6 374 46.5
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 1.7e-61 240.7 361 45.4
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 1.5e-60 237.7 176 68.8
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 4.3e-60 236.1 330 47.6
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 9.5e-60 235.0 298 47.7
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 4.0e-58 229.6 310 47.7
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 1.5e-57 227.6 366 46.4
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 5.8e-57 225.7 311 48.2
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 2.2e-56 223.8 427 40.5
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 5.4e-55 219.2 225 58.7
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.0e-53 214.9 342 47.1
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 6.6e-53 212.2 346 43.6
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 2.2e-48 197.2 197 53.8
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 1.4e-47 194.5 329 47.4
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 9.2e-47 191.8 325 44.3
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.6e-46 191.0 307 45.3
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 2.3e-45 187.2 352 42.0
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 1.1e-44 184.9 348 42.2
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 3.3e-44 183.3 345 43.2
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 1.6e-43 181.0 286 46.2
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 1.8e-42 177.6 356 42.1
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 9.9e-41 171.8 336 42.9
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 2.9e-40 170.2 336 41.1
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 4.9e-40 169.5 358 40.5
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 1.9e-39 167.5 358 41.1
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 7.8e-38 162.2 224 49.6
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 1.2e-35 154.8 237 43.5
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 3.6e-35 153.3 326 39.3
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.1e-34 151.8 145 55.9
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 1.3e-32 144.8 332 40.4
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 3.2e-31 140.2 341 37.5
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 1.2e-30 138.3 334 37.7
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 1.6e-30 137.9 315 38.1
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 2.1e-30 137.5 316 37.7
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 3.9e-29 133.3 311 37.9
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 2.5e-28 130.6 301 39.9
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 2.5e-28 130.6 310 38.4
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 4.3e-28 129.8 322 36.3
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 5.6e-28 129.4 311 38.3
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 4.2e-23 113.2 334 35.6
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 4.2e-23 113.2 334 35.6
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 3.5e-22 110.2 319 35.7
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.8e-21 107.8 367 33.5
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 3.9e-21 106.7 351 35.6
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 6.7e-21 105.9 281 37.4
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 3.7e-19 100.1 296 35.8
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 9.9e-17 92.0 215 39.5
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 2.7e-14 84.0 168 39.3
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 1.4e-10 71.6 241 32.8
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 9.0e-10 68.9 163 36.2
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 9.0e-10 68.9 37 73.0
RcHm_v2.0_Chr2g0088791 Rosa chinensis HOM05D005514 ORTHO05D006563 1.6e-06 58.2 36 75.0
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 1.6e-06 58.2 132 37.9


User provided reference genes

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