Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g04221 Fragaria vesca HOM05D006393 ORTHO05D008088 4.7e-155 551.2 288 100.0
RcHm_v2.0_Chr2g0089771 Rosa chinensis HOM05D006393 ORTHO05D008088 2.9e-149 531.9 288 95.8
FAN23G0113 Fragaria x ananassa HOM05D006393 ORTHO05D008088 1.7e-141 506.1 288 94.4
Prupe.7G235100 Prunus persica HOM05D006393 ORTHO05D008088 6.4e-136 487.6 288 84.4
MD02G1061500 Malus domestica HOM05D006393 ORTHO05D008088 2.1e-131 472.6 288 82.3
Atru.chr7.1280 Acer truncatum HOM05D006393 ORTHO05D008088 6.2e-131 471.1 288 81.6
Cfa003299 Carpinus fangiana HOM05D006393 ORTHO05D008088 3.7e-128 461.8 288 80.6
CiPaw.03G236400 Carya illinoinensis HOM05D006393 ORTHO05D008088 4.9e-128 461.5 288 79.2
Haze_25669 Corylus avellana HOM05D006393 ORTHO05D008088 1.1e-127 460.3 288 80.2
Manes.16G064200 Manihot esculenta HOM05D006393 ORTHO05D008088 3.2e-127 458.8 288 78.1
QL02p086364 Quercus lobata HOM05D006393 ORTHO05D008088 2.1e-126 456.1 287 78.4
Ciclev10008889m.g Citrus clementina HOM05D006393 ORTHO05D008088 7.3e-124 447.6 288 77.4
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 1.6e-123 446.4 288 76.0
Sed0023374 Sechium edule HOM05D006393 ORTHO05D008088 2.1e-123 446.0 288 75.0
Cpa.g.sc23.161 Carica papaya HOM05D006393 ORTHO05D008088 4.7e-123 444.9 288 76.0
Thecc.09G116800 Theobroma cacao HOM05D006393 ORTHO05D008088 6.2e-123 444.5 288 76.4
Rhsim01G0090600 Rhododendron simsii HOM05D006393 ORTHO05D008088 8.1e-123 444.1 288 76.4
Hma1.2p1_0018F.1_g013070 Hydrangea macrophylla HOM05D006393 ORTHO05D008088 1.4e-122 443.4 288 76.7
GSVIVG01015453001 Vitis vinifera HOM05D006393 ORTHO05D008088 1.4e-122 443.4 288 76.0
ClCG06G010490 Citrullus lanatus HOM05D006393 ORTHO05D008088 1.8e-122 443.0 289 76.1
Potri.018G073000 Populus trichocarpa HOM05D006393 ORTHO05D008088 1.8e-122 443.0 288 76.0
PGR102G0276 Punica granatum HOM05D006393 ORTHO05D008088 4.0e-122 441.8 288 76.7
TWI34G1546 Tripterygium wilfordii HOM05D006393 ORTHO05D008088 6.8e-122 441.0 288 74.3
vmacro20677 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 6.8e-122 441.0 288 76.0
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 8.9e-122 440.7 288 75.3
MELO3C025307.2 Cucumis melo HOM05D006393 ORTHO05D008088 1.2e-121 440.3 288 74.7
CsaV3_1G030940 Cucumis sativus L. HOM05D006393 ORTHO05D008088 1.5e-121 439.9 288 75.3
Duzib168G1441 Durio zibethinus HOM05D006393 ORTHO05D008088 1.5e-121 439.9 288 74.7
Gohir.D06G058100 Gossypium hirsutum HOM05D006393 ORTHO05D008088 5.8e-121 438.0 288 75.3
Gorai.010G068300 Gossypium raimondii HOM05D006393 ORTHO05D008088 7.6e-121 437.6 288 75.3
CSS0031330 Camellia sinensis var. sinensis HOM05D006393 ORTHO05D008088 2.2e-120 436.0 288 74.7
Lalb_Chr13g0302251 Lupinus albus HOM05D006393 ORTHO05D008088 3.7e-120 435.3 283 76.0
Migut.C00826 Erythranthe guttata HOM05D006393 ORTHO05D008088 4.9e-120 434.9 288 73.3
Aqoxy7G01879 Aquilegia oxysepala HOM05D006393 ORTHO05D008088 5.4e-119 431.4 287 74.6
Gohir.A06G059900 Gossypium hirsutum HOM05D006393 ORTHO05D008088 9.2e-119 430.6 288 74.0
CAN.G1665.6 Capsicum annuum HOM05D006393 ORTHO05D008088 1.6e-118 429.9 288 74.0
arahy.Tifrunner.gnm1.ann1.RZM4QH Arachis hypogaea HOM05D006393 ORTHO05D008088 2.7e-118 429.1 282 75.2
arahy.Tifrunner.gnm1.ann1.3AE437 Arachis hypogaea HOM05D006393 ORTHO05D008088 1.0e-117 427.2 280 75.4
DCAR_010438 Daucus carota HOM05D006393 ORTHO05D008088 3.0e-117 425.6 288 72.9
Sabra18G0063700 Salix brachista HOM05D006393 ORTHO05D008088 1.1e-116 423.7 288 74.3
Solyc10g079970.2 Solanum lycopersicum HOM05D006393 ORTHO05D008088 1.1e-116 423.7 288 71.2
Sopen10g030590 Solanum pennellii HOM05D006393 ORTHO05D008088 1.9e-116 422.9 288 71.2
PGSC0003DMG401029823 Solanum tuberosum HOM05D006393 ORTHO05D008088 4.3e-116 421.8 288 71.5
MSTRG.1197 Avicennia marina HOM05D006393 ORTHO05D008088 5.6e-116 421.4 288 71.2
SGA_v2.0_scaffold92G28235 Striga asiatica HOM05D006393 ORTHO05D008088 3.6e-115 418.7 288 71.9
Hund09172 Selenicereus undatus HOM05D006393 ORTHO05D008088 4.7e-115 418.3 288 70.1
Nitab4.5_0002551g0020 Nicotiana tabacum HOM05D006393 ORTHO05D008088 8.1e-115 417.5 288 70.1
Eucgr.C04142 Eucalyptus grandis HOM05D006393 ORTHO05D008088 1.1e-114 417.2 259 79.2
PSO782G0281 Papaver somniferum HOM05D006393 ORTHO05D008088 2.4e-114 416.0 282 71.6
Nn8g39292 Nelumbo nucifera HOM05D006393 ORTHO05D008088 3.1e-114 415.6 288 71.9
AT5G19930 Arabidopsis thaliana HOM05D006393 ORTHO05D008088 6.8e-114 414.5 280 72.5
Psat4g042480 Pisum sativum HOM05D006393 ORTHO05D008088 8.9e-114 414.1 286 72.7
Lj7A639G46 Lonicera japonica HOM05D006393 ORTHO05D008088 1.2e-113 413.7 322 65.8
Aa31LG9G6050 Aethionema arabicum HOM05D006393 ORTHO05D008088 1.5e-113 413.3 280 72.5
AUR62033415 Chenopodium quinoa HOM05D006393 ORTHO05D008088 3.4e-113 412.1 288 69.1
Sp6g24450 Schrenkiella parvula HOM05D006393 ORTHO05D008088 5.8e-113 411.4 280 72.1
unitig_37.g13035 Utricularia gibba HOM05D006393 ORTHO05D008088 1.7e-112 409.8 288 69.4
AL6G31460 Arabidopsis lyrata HOM05D006393 ORTHO05D008088 2.9e-112 409.1 280 71.4
Thhalv10014278m.g Eutrema salsugineum HOM05D006393 ORTHO05D008088 4.9e-112 408.3 280 71.8
A10p19800 Brassica napus HOM05D006393 ORTHO05D008088 8.4e-112 407.5 280 71.8
BraA10t44056Z Brassica rapa HOM05D006393 ORTHO05D008088 1.1e-111 407.1 280 71.1
BcaC04g19399 Brassica carinata HOM05D006393 ORTHO05D008088 1.9e-111 406.4 280 71.4
C09p56120 Brassica napus HOM05D006393 ORTHO05D008088 1.9e-111 406.4 280 71.4
BolC9t58479H Brassica oleracea HOM05D006393 ORTHO05D008088 1.9e-111 406.4 280 71.4
Carub.0006s1830 Capsella rubella HOM05D006393 ORTHO05D008088 1.9e-111 406.4 280 70.0
HanXRQChr03g0062141 Helianthus annuus HOM05D006393 ORTHO05D008088 1.9e-111 406.4 288 69.4
BcaB08g36553 Brassica carinata HOM05D006393 ORTHO05D008088 2.4e-111 406.0 280 71.1
TPR.G26762 Trifolium pratense HOM05D006393 ORTHO05D008088 1.6e-110 403.3 291 70.1
Ca_21724_v3 Cicer arietinum L. HOM05D006393 ORTHO05D008088 3.5e-110 402.1 282 70.2
VMungo1215G0586 Vigna mungo HOM05D006393 ORTHO05D008088 1.0e-109 400.6 282 71.3
Medtr4g112990 Medicago truncatula HOM05D006393 ORTHO05D008088 1.3e-109 400.2 286 68.5
Phvul.003G159300 Phaseolus vulgaris HOM05D006393 ORTHO05D008088 8.7e-109 397.5 282 70.2
EL10Ac8g18557 Beta vulgaris HOM05D006393 ORTHO05D008088 1.5e-108 396.7 288 68.1
Lj4g0026371 Lotus japonicus HOM05D006393 ORTHO05D008088 1.9e-108 396.4 282 71.3
THA.LOC104815111 Tarenaya hassleriana HOM05D006393 ORTHO05D008088 7.3e-108 394.4 284 69.7
CDE06G0973 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 1.3e-107 393.7 288 67.0
Glyma.17G120200 Glycine max HOM05D006393 ORTHO05D008088 2.8e-107 392.5 285 70.5
MBI04_g35350_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 4.8e-107 391.7 249 75.9
Oeu046267.2 Olea europaea HOM05D006393 ORTHO05D008088 1.5e-105 386.7 426 50.7
MBI01_g13571_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 4.9e-104 381.7 285 67.7
Lsat_1_v5_gn_7_42880 Lactuca sativa HOM05D006393 ORTHO05D008088 2.4e-103 379.4 288 65.6
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 7.1e-103 377.9 264 69.3
Os01g0507300 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 2.3e-101 372.9 275 65.5
Zm00001eb122440 Zea mays HOM05D006393 ORTHO05D008088 5.1e-101 371.7 273 68.5
HPP92_008697 Vanilla planifolia HOM05D006393 ORTHO05D008088 1.1e-100 370.5 288 63.5
Ah.14g081310 Amaranthus hybridus HOM05D006393 ORTHO05D008088 9.6e-100 367.5 348 56.9
Nitab4.5_0010615g0010 Nicotiana tabacum HOM05D006393 ORTHO05D008088 1.6e-99 366.7 249 71.1
Cc06_g09230 Coffea canephora HOM05D006393 ORTHO05D008088 1.8e-98 363.2 236 77.5
Zm00001eb106640 Zea mays HOM05D006393 ORTHO05D008088 1.5e-97 360.1 275 63.3
Peaxi162Scf00223g01425 Petunia axillaris HOM05D006393 ORTHO05D008088 1.7e-96 356.7 301 62.1
HPP92_009792 Vanilla planifolia HOM05D006393 ORTHO05D008088 2.9e-96 355.9 288 61.5
Os01g0178200 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 5.5e-95 351.7 322 57.1
Sc07g0007380 Simmondsia chinensis HOM05D006393 ORTHO05D008088 1.8e-93 346.7 236 72.0
SEGI_37175 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.5e-92 343.6 288 59.4
ATR0083G026 Amborella trichopoda HOM05D006393 ORTHO05D008088 4.3e-92 342.0 283 62.9
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 4.5e-89 332.0 196 81.1
SalBow7G4467 Salvia bowleyana HOM05D006393 ORTHO05D008088 7.6e-89 331.3 288 58.7
ECA240G0151 Erigeron canadensis HOM05D006393 ORTHO05D008088 1.1e-87 327.4 222 71.6
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 3.7e-83 312.4 284 52.8
CARHR192920 Cardamine hirsuta HOM05D006393 ORTHO05D008088 2.9e-80 302.8 200 73.0
Pp3c12_24880 Physcomitrium patens HOM05D006393 ORTHO05D008088 5.0e-80 302.0 282 54.3
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 9.3e-79 297.7 284 53.5
Oeu027539.2 Olea europaea HOM05D006393 ORTHO05D008088 4.8e-75 285.4 296 53.0
Peaxi162Scf00223g01424 Petunia axillaris HOM05D006393 ORTHO05D008088 4.5e-73 278.9 243 59.7
TAR636G2166 Trochodendron aralioides HOM05D006393 ORTHO05D008088 1.4e-58 230.7 143 79.7
CDE07G1479 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 6.1e-54 215.3 165 59.4
PRCOL_00002470 Prasinoderma coloniale HOM05D006393 ORTHO05D008088 6.1e-54 215.3 271 46.1
Cre17.g726350 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 9.1e-50 201.4 319 39.5
SEGI_23420 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 4.0e-45 186.0 181 51.4
Eucgr.L03082 Eucalyptus grandis HOM05D006393 ORTHO05D008088 1.1e-39 167.9 132 63.6
Psat6g218400 Pisum sativum HOM05D006393 ORTHO05D008088 1.5e-39 167.5 116 75.9
Glyma.05G012000 Glycine max HOM05D006393 ORTHO05D008088 8.8e-37 158.3 117 72.6
SEGI_36873 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 4.4e-36 156.0 181 49.7
Cre02.g118200 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 5.7e-36 155.6 329 35.0
MCO12G460 Micromonas commoda HOM05D006393 ORTHO05D008088 6.3e-35 152.1 167 50.3
Psat5g214680 Pisum sativum HOM05D006393 ORTHO05D008088 6.1e-30 135.6 95 72.6
Eucgr.E03680 Eucalyptus grandis HOM05D006393 ORTHO05D008088 2.6e-28 130.2 86 74.4
SEGI_10855 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.8e-26 124.0 188 39.4
Zm00001eb342450 Zea mays HOM05D006393 ORTHO05D008088 7.8e-25 118.6 161 44.7
vmacro16552 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 1.1e-10 71.6 144 40.3
SEGI_14370 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.7e-08 64.3 58 55.2
SEGI_30446 Sequoiadendron giganteum HOM05D006393 ORTHO05D000979 1.7e-08 64.3 68 47.1
TAR636G3545 Trochodendron aralioides HOM05D006393 ORTHO05D008088 3.3e-07 60.1 50 56.0
Actinidia20331 Actinidia chinensis HOM05D006393 ORTHO05D008088 3.6e-06 56.6 69 50.7


User provided reference genes

Program Settings