Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 1.4e-245 852.8 551 100.0
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 9.4e-229 797.0 489 96.5
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.7e-225 785.0 504 93.3
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.1e-221 773.5 506 91.9
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 1.0e-195 687.2 411 89.1
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 5.4e-160 568.5 411 74.9
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 2.4e-147 526.6 408 70.3
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 2.9e-121 439.9 413 58.1
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 5.0e-121 439.1 410 59.8
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 7.9e-119 431.8 408 57.8
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 1.0e-118 431.4 462 53.5
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 1.1e-115 421.4 416 57.5
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 3.2e-112 409.8 394 58.4
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 2.7e-111 406.8 380 61.8
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 1.1e-109 401.4 533 46.7
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 2.0e-109 400.6 411 54.5
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 3.3e-109 399.8 382 60.2
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 2.8e-108 396.7 398 56.0
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 2.4e-107 393.7 405 54.3
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 3.1e-107 393.3 401 55.1
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 7.0e-107 392.1 382 55.5
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 1.6e-106 391.0 407 53.8
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 5.0e-105 386.0 412 53.4
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 7.2e-104 382.1 411 54.0
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 2.7e-103 380.2 454 50.9
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 3.6e-103 379.8 415 52.5
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 5.2e-102 375.9 412 53.9
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 8.8e-102 375.2 383 57.2
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.2e-101 374.8 451 48.8
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 1.5e-101 374.4 466 47.6
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 6.3e-100 369.0 415 52.3
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 1.4e-99 367.9 397 52.4
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 1.4e-99 367.9 401 50.4
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 1.8e-99 367.5 404 53.7
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 2.4e-99 367.1 409 52.3
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 2.4e-99 367.1 383 55.9
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 7.0e-99 365.5 412 52.7
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 9.1e-99 365.2 404 52.0
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 1.0e-97 361.7 413 51.8
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 1.0e-97 361.7 447 51.2
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 1.3e-97 361.3 416 51.7
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 1.7e-97 360.9 399 52.1
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 3.8e-97 359.8 407 52.3
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 8.5e-97 358.6 411 49.6
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 8.5e-97 358.6 408 52.9
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 1.9e-96 357.5 424 50.5
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 2.5e-96 357.1 402 48.8
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 4.2e-96 356.3 432 50.0
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 5.5e-96 355.9 423 50.4
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 7.2e-96 355.5 407 51.8
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 6.1e-95 352.4 411 49.9
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 8.0e-95 352.1 408 52.7
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 1.8e-94 350.9 410 50.0
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 4.0e-94 349.7 462 45.2
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 1.2e-93 348.2 415 50.6
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 1.5e-93 347.8 424 50.9
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 2.0e-93 347.4 375 51.2
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 5.7e-93 345.9 413 49.4
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 1.7e-92 344.4 427 50.8
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 1.1e-91 341.7 458 45.9
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 9.1e-91 338.6 383 52.2
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 2.0e-90 337.4 400 50.2
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 3.5e-90 336.7 399 49.6
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 4.5e-90 336.3 412 48.8
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 8.6e-89 332.0 419 48.0
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 1.8e-86 324.3 462 45.2
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 3.0e-86 323.6 411 48.4
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 6.8e-86 322.4 423 47.0
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 6.8e-86 322.4 423 47.0
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 3.4e-85 320.1 423 46.8
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 4.4e-85 319.7 431 47.3
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 4.4e-85 319.7 419 46.5
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 7.5e-85 318.9 416 48.6
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 9.8e-85 318.5 410 47.6
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 2.8e-84 317.0 423 47.3
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 2.8e-84 317.0 423 47.3
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 1.4e-83 314.7 410 45.4
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 4.5e-82 309.7 411 47.0
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 6.6e-81 305.8 411 47.4
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 1.5e-80 304.7 419 45.1
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 4.3e-80 303.1 340 52.6
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 1.6e-79 301.2 407 45.9
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 2.1e-79 300.8 417 46.3
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 6.1e-79 299.3 403 44.9
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 2.3e-78 297.4 355 49.0
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 2.9e-76 290.4 415 43.6
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 7.0e-75 285.8 411 44.8
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 7.8e-74 282.3 357 47.3
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 1.4e-70 271.6 411 42.3
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 1.8e-70 271.2 414 43.5
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 5.8e-69 266.2 391 44.8
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 6.4e-68 262.7 400 42.0
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 1.7e-65 254.6 210 62.4
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 5.8e-61 239.6 187 62.6
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.0e-53 214.5 193 57.0
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 2.4e-51 207.6 266 48.5
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 2.7e-50 204.1 487 32.6
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 5.1e-41 173.3 195 50.3
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 7.1e-35 152.9 244 42.2
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 2.1e-34 151.4 138 60.9
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 8.7e-33 146.0 511 29.2
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 4.3e-32 143.7 178 53.4
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 4.3e-32 143.7 120 63.3
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 7.4e-32 142.9 416 32.5
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 7.4e-32 142.9 416 32.5
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 3.4e-29 134.0 114 56.1
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 1.3e-28 132.1 165 50.3
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 2.1e-26 124.8 115 58.3
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 6.7e-25 119.8 129 50.4
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 7.4e-24 116.3 74 73.0
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 2.0e-21 108.2 69 73.9
MD02G1041100 Malus domestica HOM05D006752 ORTHO05D008597 1.7e-20 105.1 99 60.6
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 9.3e-19 99.4 75 72.0
MD11G1046200 Malus domestica HOM05D006752 ORTHO05D008597 2.3e-17 94.7 62 77.4
MD02G1040400 Malus domestica HOM05D006752 ORTHO05D008597 1.9e-16 91.7 63 73.0
MD02G1040500 Malus domestica HOM05D006752 ORTHO05D008597 1.8e-14 85.1 83 57.8
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 1.2e-13 82.4 197 28.4
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 1.7e-12 78.6 406 25.1
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 3.2e-11 74.3 104 41.3
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 2.7e-10 71.2 136 36.0
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 8.8e-09 66.2 43 72.1
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 2.5e-08 64.7 122 32.8
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 4.3e-08 63.9 198 27.3
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 9.7e-08 62.8 124 36.3
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.7e-07 62.0 122 34.4
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 1.7e-07 62.0 156 30.1
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 2.8e-07 61.2 122 32.8
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 4.8e-07 60.5 153 30.1
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.8e-07 60.5 179 30.7
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.8e-07 60.5 178 30.9
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 6.3e-07 60.1 122 32.0
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.4e-06 58.9 133 32.3
MD00G1027200 Malus domestica HOM05D006752 ORTHO05D008597 2.4e-06 58.2 45 62.2
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 2.4e-06 58.2 122 33.6
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 2.4e-06 58.2 120 34.2
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 3.1e-06 57.8 133 30.1
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 4.1e-06 57.4 120 33.3
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 4.1e-06 57.4 123 35.0
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 5.3e-06 57.0 123 35.0
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 6.9e-06 56.6 122 32.0
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 6.9e-06 56.6 122 34.4
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 6.9e-06 56.6 234 28.2
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 9.1e-06 56.2 122 32.8
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 9.1e-06 56.2 122 32.8
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 9.1e-06 56.2 122 32.0


User provided reference genes

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