Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 4.5e-36 154.1 78 100.0
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 8.8e-32 139.8 72 95.8
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 8.8e-32 139.8 72 95.8
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 8.8e-32 139.8 72 95.8
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 3.4e-31 137.9 72 94.4
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 2.8e-30 134.8 77 85.7
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 8.0e-25 116.7 60 98.3
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 2.0e-23 112.1 78 73.1
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 5.7e-23 110.5 72 77.8
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 6.3e-22 107.1 73 69.9
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 4.1e-21 104.4 73 74.0
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 5.9e-20 100.5 72 70.8
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 2.3e-19 98.6 72 69.4
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 2.3e-19 98.6 72 68.1
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.8e-19 97.8 72 68.1
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 6.6e-19 97.1 72 66.7
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 6.6e-19 97.1 69 69.6
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 6.6e-19 97.1 72 68.1
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 6.6e-19 97.1 73 65.8
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 8.6e-19 96.7 73 68.5
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 8.6e-19 96.7 70 68.6
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 1.5e-18 95.9 72 68.1
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 1.9e-18 95.5 67 76.1
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 1.9e-18 95.5 72 68.1
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 1.9e-18 95.5 70 68.6
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 2.5e-18 95.1 72 69.4
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 3.3e-18 94.7 72 66.7
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.3e-18 94.7 64 68.8
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 5.5e-18 94.0 67 71.6
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 5.5e-18 94.0 65 73.8
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 5.5e-18 94.0 68 72.1
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 7.2e-18 93.6 72 69.4
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 7.2e-18 93.6 67 74.6
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 7.2e-18 93.6 70 68.6
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 7.2e-18 93.6 71 69.0
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 7.2e-18 93.6 72 69.4
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 7.2e-18 93.6 73 63.0
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 9.5e-18 93.2 73 67.1
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 1.6e-17 92.4 72 66.7
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.6e-17 92.4 71 60.6
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 2.8e-17 91.7 72 68.1
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 2.8e-17 91.7 70 62.9
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 2.8e-17 91.7 72 63.9
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 2.8e-17 91.7 72 63.9
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 2.8e-17 91.7 71 66.2
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 3.6e-17 91.3 77 59.7
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 4.7e-17 90.9 67 70.1
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 4.7e-17 90.9 72 65.3
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 4.7e-17 90.9 67 71.6
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 6.1e-17 90.5 72 63.9
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 6.1e-17 90.5 67 68.7
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 1.0e-16 89.7 72 66.7
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.0e-16 89.7 71 59.2
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 1.4e-16 89.4 72 63.9
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 1.4e-16 89.4 72 63.9
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 1.8e-16 89.0 69 66.7
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.8e-16 89.0 67 68.7
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 2.3e-16 88.6 73 63.0
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 2.3e-16 88.6 66 63.6
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 2.3e-16 88.6 66 63.6
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 3.0e-16 88.2 72 62.5
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 3.0e-16 88.2 72 62.5
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 3.0e-16 88.2 72 62.5
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 3.0e-16 88.2 61 67.2
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 3.0e-16 88.2 68 67.6
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 4.0e-16 87.8 72 62.5
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 8.9e-16 86.7 71 66.2
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 8.9e-16 86.7 70 65.7
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 8.9e-16 86.7 67 61.2
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 8.9e-16 86.7 57 71.9
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 1.2e-15 86.3 72 65.3
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 1.5e-15 85.9 68 67.6
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 1.5e-15 85.9 68 67.6
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 1.5e-15 85.9 66 68.2
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 2.0e-15 85.5 67 65.7
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 2.0e-15 85.5 72 59.7
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 3.4e-15 84.7 71 66.2
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 3.4e-15 84.7 67 65.7
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 4.4e-15 84.3 72 62.5
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 4.4e-15 84.3 72 59.7
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 5.7e-15 84.0 65 64.6
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 7.5e-15 83.6 65 61.5
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 7.5e-15 83.6 65 61.5
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 9.8e-15 83.2 50 76.0
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 1.3e-14 82.8 72 58.3
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 2.2e-14 82.0 66 66.7
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 2.2e-14 82.0 69 62.3
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 2.2e-14 82.0 66 63.6
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 2.9e-14 81.6 62 61.3
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 4.9e-14 80.9 54 72.2
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 8.3e-14 80.1 66 59.1
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 1.8e-13 79.0 57 66.7
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 4.1e-13 77.8 72 56.9
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 4.1e-13 77.8 66 63.6
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 1.6e-12 75.9 76 53.9
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 3.5e-12 74.7 50 70.0
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 1.3e-11 72.8 73 50.7
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 6.6e-11 70.5 43 81.4
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 1.9e-10 68.9 84 48.8
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 1.6e-09 65.9 72 45.8
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 1.2e-07 59.7 70 45.7
MCO15G341 Micromonas commoda HOM05D007420 ORTHO05D009353 2.2e-06 55.5 64 46.9
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 2.9e-06 55.1 38 65.8


User provided reference genes

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