Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 1.6e-180 636.0 321 100.0
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.6e-180 634.8 321 99.7
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 7.5e-178 627.1 321 98.4
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.1e-176 623.2 321 97.8
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.0e-174 616.7 322 97.5
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 2.4e-160 568.9 328 89.0
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 9.0e-131 470.7 321 73.5
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 2.6e-130 469.2 325 73.5
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 4.2e-128 461.8 327 72.5
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 5.4e-128 461.5 325 73.5
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 6.0e-127 458.0 326 71.8
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 1.0e-126 457.2 328 73.2
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 2.5e-125 452.6 328 71.0
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 3.3e-125 452.2 326 72.4
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 1.6e-124 449.9 333 70.3
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 2.1e-124 449.5 327 70.0
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 2.8e-124 449.1 325 71.4
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 2.8e-124 449.1 323 70.3
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 3.7e-124 448.7 328 69.8
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 1.4e-123 446.8 322 69.6
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 1.4e-123 446.8 327 70.6
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 4.0e-123 445.3 325 71.4
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 5.3e-123 444.9 324 71.3
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 5.3e-123 444.9 326 71.2
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 9.0e-123 444.1 328 70.4
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.2e-122 443.7 326 70.9
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.5e-122 443.4 281 78.3
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 2.0e-122 443.0 323 70.0
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 3.4e-122 442.2 326 71.2
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 4.5e-122 441.8 323 70.0
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 4.5e-122 441.8 325 69.5
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 5.8e-122 441.4 322 69.9
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 5.8e-122 441.4 326 70.6
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 7.6e-122 441.0 327 69.1
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 7.6e-122 441.0 326 70.9
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 7.6e-122 441.0 331 69.8
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 2.9e-121 439.1 323 69.7
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 2.9e-121 439.1 325 69.8
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 2.9e-121 439.1 325 69.8
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 2.9e-121 439.1 353 67.1
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 2.9e-121 439.1 328 70.4
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 3.8e-121 438.7 323 71.2
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 4.9e-121 438.3 326 69.3
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 4.9e-121 438.3 327 69.4
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 6.4e-121 438.0 326 70.6
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 6.4e-121 438.0 324 70.1
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 8.4e-121 437.6 333 68.5
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.1e-120 437.2 328 69.8
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.9e-120 436.4 323 69.0
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 2.5e-120 436.0 352 67.0
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 2.5e-120 436.0 325 70.2
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 5.5e-120 434.9 326 68.1
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 5.5e-120 434.9 331 68.0
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 7.1e-120 434.5 326 70.2
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 7.1e-120 434.5 327 68.2
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 7.1e-120 434.5 326 69.3
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 7.1e-120 434.5 323 67.8
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 9.3e-120 434.1 331 69.8
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 1.2e-119 433.7 326 69.3
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 1.2e-119 433.7 335 67.2
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 1.2e-119 433.7 324 67.6
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 1.6e-119 433.3 329 68.1
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 2.1e-119 433.0 323 68.7
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 3.5e-119 432.2 329 68.4
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 4.6e-119 431.8 325 68.0
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 4.6e-119 431.8 324 69.4
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 4.6e-119 431.8 325 70.5
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 7.9e-119 431.0 328 68.6
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 1.0e-118 430.6 324 67.9
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 1.0e-118 430.6 323 68.7
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.8e-118 429.9 264 79.2
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 3.0e-118 429.1 327 68.2
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 3.9e-118 428.7 264 78.8
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 5.1e-118 428.3 333 66.4
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 5.1e-118 428.3 321 69.8
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 6.7e-118 427.9 325 69.2
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 6.7e-118 427.9 327 68.2
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.1e-117 427.2 332 68.7
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 2.5e-117 426.0 333 65.8
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 5.6e-117 424.9 328 68.6
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 7.4e-117 424.5 360 62.2
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 1.6e-116 423.3 322 66.8
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 1.6e-116 423.3 327 67.9
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 2.8e-116 422.5 267 77.9
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 2.8e-116 422.5 325 66.5
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 3.7e-116 422.2 325 66.2
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 4.8e-116 421.8 323 68.1
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 8.2e-116 421.0 323 67.5
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 2.4e-115 419.5 322 66.1
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 3.1e-115 419.1 327 65.1
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 1.5e-114 416.8 324 66.4
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 4.5e-114 415.2 327 64.8
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 1.3e-113 413.7 321 65.7
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 8.4e-113 411.0 322 65.5
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 3.2e-112 409.1 330 63.9
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 2.7e-111 406.0 322 65.2
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 2.3e-110 402.9 322 64.9
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 6.7e-110 401.4 322 64.0
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 4.3e-109 398.7 329 64.1
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 5.7e-109 398.3 266 73.7
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 5.7e-109 398.3 502 47.4
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 8.2e-108 394.4 288 67.4
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 8.2e-108 394.4 265 70.2
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 2.4e-107 392.9 317 67.5
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 9.4e-104 380.9 290 67.9
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.8e-102 376.7 327 62.4
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 1.9e-96 356.7 385 51.4
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 1.2e-82 310.8 269 56.5
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.2e-82 310.8 201 77.6
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 1.7e-81 307.0 187 80.7
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 1.1e-80 304.3 267 55.4
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 3.2e-80 302.8 183 82.5
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 8.8e-78 294.7 170 85.3
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 5.7e-77 292.0 175 80.6
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 2.4e-75 286.6 176 80.7
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 4.7e-71 272.3 167 79.0
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 3.8e-65 252.7 204 64.7
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 5.4e-51 205.7 151 70.2
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.0e-49 201.4 188 58.5
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.3e-48 196.4 132 74.2
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.1e-47 193.7 220 52.3
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.8e-46 190.7 121 77.7
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 9.8e-45 184.9 120 73.3
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 2.9e-44 183.3 165 53.3
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.1e-42 177.2 115 74.8
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.4e-37 159.8 121 69.4
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 1.3e-33 147.9 158 58.2
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.3e-33 147.1 95 77.9
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 2.6e-21 107.1 69 75.4
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 9.6e-16 88.6 124 46.8
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 6.9e-14 82.4 172 33.7
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 3.2e-11 73.6 55 63.6
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 6.0e-10 69.3 175 29.1
Cre09.g386756 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 3.0e-09 67.0 178 29.8
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 3.0e-09 67.0 180 31.7
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.8e-06 57.8 135 32.6
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 2.4e-06 57.4 148 32.4
PRCOL_00003044 Prasinoderma coloniale HOM05D024924 ORTHO05D006483 3.1e-06 57.0 139 31.7


User provided reference genes

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