Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 1.2e-55 219.9 134 100.0
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.2e-55 219.9 134 100.0
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 5.7e-55 217.6 134 98.5
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.7e-52 208.8 132 84.8
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 1.7e-46 189.5 134 87.3
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 4.4e-39 164.9 130 81.5
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 2.4e-37 159.1 128 79.7
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 4.6e-36 154.8 130 63.8
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 2.3e-35 152.5 130 76.2
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 2.3e-35 152.5 130 66.2
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 1.9e-34 149.4 129 58.9
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 9.5e-34 147.1 130 66.2
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 3.6e-33 145.2 130 68.5
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 6.2e-33 144.4 130 53.8
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 1.4e-32 143.3 130 72.3
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 2.3e-32 142.5 134 61.9
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 2.3e-32 142.5 128 56.2
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 5.2e-32 141.4 130 55.4
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 8.9e-32 140.6 134 64.9
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 1.2e-31 140.2 130 65.4
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.2e-31 140.2 131 61.1
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 3.4e-31 138.7 130 54.6
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 3.4e-31 138.7 130 68.5
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 5.8e-31 137.9 135 57.0
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 7.5e-31 137.5 125 66.4
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 1.7e-30 136.3 130 60.0
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 2.2e-30 136.0 131 53.4
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 2.2e-30 136.0 129 57.4
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 2.9e-30 135.6 130 66.2
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 3.7e-30 135.2 131 59.5
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 8.3e-30 134.0 131 58.8
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 8.3e-30 134.0 130 59.2
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 8.3e-30 134.0 131 61.8
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 1.4e-29 133.3 136 53.7
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 1.9e-29 132.9 130 70.8
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 1.9e-29 132.9 130 61.5
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 1.9e-29 132.9 130 63.8
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 5.4e-29 131.3 131 53.4
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 5.4e-29 131.3 130 51.5
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 5.4e-29 131.3 130 51.5
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.6e-28 129.8 130 53.1
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.0e-28 129.4 130 52.3
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 2.0e-28 129.4 130 55.4
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 2.7e-28 129.0 131 51.1
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 2.7e-28 129.0 130 51.5
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 4.6e-28 128.3 129 64.3
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 6.0e-28 127.9 130 60.8
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 6.0e-28 127.9 130 50.8
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 7.8e-28 127.5 130 69.2
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 1.7e-27 126.3 136 55.9
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 3.9e-27 125.2 130 66.9
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 1.5e-26 123.2 130 56.2
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 1.9e-26 122.9 131 51.9
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 1.9e-26 122.9 132 49.2
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 2.5e-26 122.5 130 55.4
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 3.3e-26 122.1 130 57.7
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 4.3e-26 121.7 131 51.1
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 9.5e-26 120.6 131 60.3
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 1.2e-25 120.2 132 56.1
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 1.2e-25 120.2 142 45.1
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 2.8e-25 119.0 131 57.3
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 1.1e-24 117.1 133 63.9
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 1.4e-24 116.7 120 50.8
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 2.3e-24 115.9 132 57.6
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 3.1e-24 115.5 131 51.9
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 4.0e-24 115.2 133 52.6
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 4.0e-24 115.2 132 57.6
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 5.2e-24 114.8 136 52.2
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 1.5e-23 113.2 149 53.0
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 2.0e-23 112.8 129 57.4
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 7.5e-23 110.9 130 53.1
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 7.5e-23 110.9 132 55.3
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 9.8e-23 110.5 126 55.6
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 1.3e-22 110.2 128 58.6
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.2e-22 109.4 107 60.7
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 2.2e-22 109.4 107 60.7
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 2.2e-22 109.4 141 47.5
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 1.9e-21 106.3 125 52.8
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 1.9e-21 106.3 129 48.8
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 2.4e-21 105.9 134 57.5
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 2.4e-21 105.9 129 45.0
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 3.2e-21 105.5 105 68.6
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 3.2e-21 105.5 102 65.7
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 3.2e-21 105.5 102 65.7
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 4.1e-21 105.1 130 49.2
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 7.1e-21 104.4 134 56.7
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 7.1e-21 104.4 109 51.4
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 1.6e-20 103.2 97 72.2
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 1.6e-20 103.2 133 60.9
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.1e-20 102.8 59 94.9
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.7e-20 102.4 129 42.6
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 4.6e-20 101.7 91 74.7
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 4.6e-20 101.7 91 74.7
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 4.6e-20 101.7 133 44.4
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 6.0e-20 101.3 129 41.9
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 6.0e-20 101.3 103 68.9
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 7.8e-20 100.9 113 59.3
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 1.0e-19 100.5 109 61.5
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 2.3e-19 99.4 91 67.0
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 2.3e-19 99.4 136 52.2
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 2.3e-19 99.4 124 57.3
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 3.9e-19 98.6 91 72.5
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 8.6e-19 97.4 97 49.5
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 1.1e-18 97.1 130 40.0
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 1.1e-18 97.1 130 58.5
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 1.5e-18 96.7 136 51.5
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.5e-18 95.9 127 57.5
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.5e-18 95.9 127 57.5
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 2.5e-18 95.9 135 54.1
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 3.3e-18 95.5 136 52.2
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 4.3e-18 95.1 130 50.0
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 4.3e-18 95.1 130 46.2
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 5.6e-18 94.7 127 56.7
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 7.3e-18 94.4 130 50.0
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 9.5e-18 94.0 90 74.4
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 9.5e-18 94.0 130 50.0
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 1.2e-17 93.6 127 56.7
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 1.6e-17 93.2 127 56.7
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 2.1e-17 92.8 130 52.3
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 2.1e-17 92.8 124 54.8
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 2.1e-17 92.8 107 57.9
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 3.6e-17 92.0 88 50.0
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 3.6e-17 92.0 134 57.5
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 4.7e-17 91.7 78 57.7
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 6.2e-17 91.3 127 59.1
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 8.1e-17 90.9 88 64.8
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 8.1e-17 90.9 88 64.8
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.1e-16 90.5 123 51.2
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 1.1e-16 90.5 135 55.6
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 1.4e-16 90.1 88 71.6
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.4e-16 90.1 122 50.8
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 1.4e-16 90.1 149 36.9
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 1.8e-16 89.7 138 39.1
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 2.3e-16 89.4 134 51.5
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 2.3e-16 89.4 137 48.9
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 2.3e-16 89.4 130 46.2
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 3.1e-16 89.0 95 47.4
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 3.1e-16 89.0 139 49.6
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 5.2e-16 88.2 88 63.6
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 5.2e-16 88.2 94 74.5
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 6.8e-16 87.8 94 70.2
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 1.2e-15 87.0 92 55.4
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 1.2e-15 87.0 138 48.6
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 1.2e-15 87.0 132 55.3
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 2.6e-15 85.9 121 45.5
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 2.6e-15 85.9 111 53.2
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 3.4e-15 85.5 80 56.2
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 4.4e-15 85.1 133 55.6
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 5.8e-15 84.7 86 70.9
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 7.6e-15 84.3 130 55.4
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 9.9e-15 84.0 121 43.0
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.3e-14 83.6 80 53.8
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.7e-14 83.2 135 52.6
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 1.7e-14 83.2 109 49.5
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 2.2e-14 82.8 111 52.3
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 2.2e-14 82.8 110 45.5
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 4.9e-14 81.6 89 53.9
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 4.9e-14 81.6 77 59.7
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 4.1e-13 78.6 107 43.9
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 5.4e-13 78.2 80 47.5
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 7.1e-13 77.8 102 40.2
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 9.2e-13 77.4 81 53.1
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.1e-12 76.3 101 48.5
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 4.6e-12 75.1 123 41.5
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 4.6e-12 75.1 113 36.3
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 7.8e-12 74.3 131 35.9
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 1.0e-11 73.9 94 62.8
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 3.0e-11 72.4 83 63.9
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 3.9e-11 72.0 68 52.9
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 3.9e-11 72.0 60 70.0
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 5.1e-11 71.6 96 40.6
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 1.1e-10 70.5 101 37.6
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.5e-10 70.1 68 52.9
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 2.5e-10 69.3 81 55.6
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.3e-10 68.9 92 51.1
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 7.3e-10 67.8 107 38.3
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 8.1e-09 64.3 69 44.9
Gohir.A10G065840 Gossypium hirsutum HOM05D003537 ORTHO05D004180 7.6e-07 57.8 47 61.7
C03p67010 Brassica napus HOM05D003537 ORTHO05D004180 9.9e-07 57.4 106 35.8
BolC3t18976H Brassica oleracea HOM05D003537 ORTHO05D004180 9.9e-07 57.4 106 35.8
CSS0006865 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 1.7e-06 56.6 48 56.2
CSS0026750 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 1.7e-06 56.6 48 56.2
Gohir.D08G087900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.2e-06 56.2 66 48.5
MELO3C030460.2 Cucumis melo HOM05D003537 ORTHO05D004180 3.8e-06 55.5 48 68.8


User provided reference genes

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